Wall clock time and date at job start Tue Mar 31 2020 18:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21293 * 120.00220 * 2 1 4 4 N 1.34777 * 119.99875 * 179.97438 * 2 1 3 5 5 C 1.40070 * 119.99954 * 184.46778 * 4 2 1 6 6 C 1.38465 * 120.01368 * 325.33275 * 5 4 2 7 7 C 1.39567 * 119.80823 * 180.29550 * 6 5 4 8 8 C 1.47737 * 120.09305 * 179.70060 * 7 6 5 9 9 O 1.21578 * 119.99732 * 359.72624 * 8 7 6 10 10 N 1.34770 * 120.00484 * 179.71931 * 8 7 6 11 11 C 1.46497 * 120.00529 * 179.97438 * 10 8 7 12 12 C 1.50696 * 109.47594 * 180.02562 * 11 10 8 13 13 C 1.31003 * 120.00426 * 125.00225 * 12 11 10 14 14 C 1.50693 * 120.00219 * 180.02562 * 13 12 11 15 15 N 1.46494 * 109.47377 * 124.99931 * 14 13 12 16 16 C 1.36943 * 120.00300 * 179.97438 * 15 14 13 17 17 H 1.07994 * 119.99416 * 0.02562 * 16 15 14 18 18 C 1.38809 * 119.99753 * 179.97438 * 16 15 14 19 19 N 1.31612 * 120.00486 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99623 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47277 * 59.99912 * 20 18 16 22 22 H 1.48495 * 109.47429 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47123 * 300.00380 * 20 18 16 24 24 C 1.39663 * 119.81981 * 359.42349 * 7 6 5 25 25 C 1.37898 * 120.01236 * 0.27711 * 24 7 6 26 26 C 1.38502 * 120.19473 * 0.02562 * 25 24 7 27 27 F 1.35103 * 119.91007 * 179.97438 * 26 25 24 28 28 H 1.09002 * 109.47442 * 270.00890 * 1 2 3 29 29 H 1.08998 * 109.47106 * 30.00145 * 1 2 3 30 30 H 1.09002 * 109.47495 * 150.00231 * 1 2 3 31 31 H 0.97003 * 120.00172 * 4.48087 * 4 2 1 32 32 H 1.08007 * 120.09191 * 0.02562 * 6 5 4 33 33 H 0.97003 * 119.99945 * 0.02562 * 10 8 7 34 34 H 1.08998 * 109.47378 * 300.00666 * 11 10 8 35 35 H 1.08999 * 109.46885 * 60.00383 * 11 10 8 36 36 H 1.08003 * 120.00000 * 305.00289 * 12 11 10 37 37 H 1.08003 * 119.99573 * 0.02562 * 13 12 11 38 38 H 1.09008 * 109.46655 * 245.00241 * 14 13 12 39 39 H 1.08997 * 109.47183 * 4.99642 * 14 13 12 40 40 H 0.96999 * 120.00120 * 359.97438 * 15 14 13 41 41 H 0.96997 * 120.00222 * 179.97438 * 19 18 16 42 42 H 1.08001 * 119.99578 * 180.30403 * 24 7 6 43 43 H 1.07996 * 119.90190 * 180.02562 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.5783 -1.1690 0.0950 6 6 4.3141 -0.1583 -0.5002 7 6 5.7067 -0.1677 -0.4086 8 6 6.4983 0.9040 -1.0470 9 8 5.9369 1.7931 -1.6574 10 7 7.8427 0.8963 -0.9527 11 6 8.6276 1.9587 -1.5861 12 6 10.0938 1.7183 -1.3343 13 6 10.9286 1.6482 -2.3415 14 6 12.3947 1.4073 -2.0896 15 7 12.8354 0.2370 -2.8527 16 6 14.1392 -0.1758 -2.7812 17 1 14.8423 0.3612 -2.1619 18 6 14.5566 -1.2850 -3.5039 19 7 13.6996 -1.9396 -4.2583 20 14 16.3349 -1.8485 -3.4058 21 1 16.6691 -2.1899 -1.9997 22 1 16.5230 -3.0454 -4.2643 23 1 17.2265 -0.7577 -3.8756 24 6 6.3497 -1.1898 0.2930 25 6 5.6093 -2.1894 0.8883 26 6 4.2277 -2.1841 0.7924 27 9 3.5080 -3.1665 1.3774 28 1 -0.3634 0.0002 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5138 31 1 1.6980 -2.0060 -0.0647 32 1 3.8119 0.6327 -1.0375 33 1 8.2906 0.1868 -0.4659 34 1 8.4390 1.9590 -2.6596 35 1 8.3398 2.9226 -1.1664 36 1 10.4565 1.6039 -0.3234 37 1 10.5660 1.7630 -3.3523 38 1 12.9656 2.2815 -2.4029 39 1 12.5563 1.2297 -1.0264 40 1 12.2038 -0.2455 -3.4087 41 1 13.9913 -2.7144 -4.7636 42 1 7.4270 -1.1972 0.3699 43 1 6.1084 -2.9787 1.4308 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001669213952.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:35 Heat of formation + Delta-G solvation = -83.789286 kcal Electronic energy + Delta-G solvation = -26749.997406 eV Core-core repulsion = 22516.449990 eV Total energy + Delta-G solvation = -4233.547415 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.11573 -41.77064 -40.88121 -39.10628 -37.67325 -36.30777 -36.04469 -34.45854 -32.62590 -32.13781 -31.72072 -29.68595 -28.59409 -26.18545 -24.75679 -24.40888 -23.46220 -21.97239 -21.62233 -20.85891 -19.65144 -19.09290 -18.61723 -18.25448 -17.72442 -17.49515 -16.90400 -16.71289 -16.53656 -16.41537 -16.22554 -15.75986 -15.32776 -15.29145 -15.13072 -14.88284 -14.75840 -14.38691 -14.33108 -13.99940 -13.59869 -13.49555 -13.43415 -13.29919 -13.07237 -12.87414 -12.69932 -12.68636 -12.22985 -11.98115 -11.78994 -11.72883 -11.30662 -11.04742 -11.00124 -10.44679 -10.12073 -9.94324 -9.42140 -9.00048 -7.94733 -5.24607 -0.53429 -0.00641 1.03926 1.34320 1.49438 1.52382 1.58646 1.65628 1.86631 2.23765 2.57492 2.58292 2.90139 3.38958 3.51489 3.59469 3.71312 3.73592 3.93149 4.02527 4.09741 4.24885 4.28361 4.44999 4.47049 4.61139 4.62447 4.68980 4.74235 4.81319 4.93280 4.94891 5.02113 5.03857 5.07965 5.15988 5.25394 5.48807 5.65778 5.66440 5.83670 6.22704 6.27140 6.42115 6.97680 7.06801 7.33404 8.07709 8.31621 9.28446 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.017459 B = 0.001855 C = 0.001727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.392302 B =15093.560640 C =16206.917945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.503 3.497 3 O -0.573 6.573 4 N -0.663 5.663 5 C 0.096 3.904 6 C -0.057 4.057 7 C -0.139 4.139 8 C 0.556 3.444 9 O -0.579 6.579 10 N -0.705 5.705 11 C 0.156 3.844 12 C -0.161 4.161 13 C -0.130 4.130 14 C 0.173 3.827 15 N -0.744 5.744 16 C -0.250 4.250 17 H 0.078 0.922 18 C -0.075 4.075 19 N -0.969 5.969 20 Si 0.976 3.024 21 H -0.275 1.275 22 H -0.296 1.296 23 H -0.278 1.278 24 C -0.061 4.061 25 C -0.130 4.130 26 C 0.101 3.899 27 F -0.127 7.127 28 H 0.117 0.883 29 H 0.097 0.903 30 H 0.116 0.884 31 H 0.432 0.568 32 H 0.132 0.868 33 H 0.416 0.584 34 H 0.062 0.938 35 H 0.081 0.919 36 H 0.134 0.866 37 H 0.107 0.893 38 H 0.030 0.970 39 H 0.036 0.964 40 H 0.374 0.626 41 H 0.252 0.748 42 H 0.168 0.832 43 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.756 -1.826 14.212 31.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.294 3.706 3 O -0.451 6.451 4 N -0.311 5.311 5 C 0.000 4.000 6 C -0.079 4.079 7 C -0.143 4.143 8 C 0.344 3.656 9 O -0.460 6.460 10 N -0.358 5.358 11 C 0.033 3.967 12 C -0.180 4.180 13 C -0.149 4.149 14 C 0.047 3.953 15 N -0.387 5.387 16 C -0.382 4.382 17 H 0.096 0.904 18 C -0.268 4.268 19 N -0.620 5.620 20 Si 0.805 3.195 21 H -0.201 1.201 22 H -0.222 1.222 23 H -0.205 1.205 24 C -0.080 4.080 25 C -0.148 4.148 26 C 0.079 3.921 27 F -0.105 7.105 28 H 0.136 0.864 29 H 0.116 0.884 30 H 0.134 0.866 31 H 0.272 0.728 32 H 0.150 0.850 33 H 0.254 0.746 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.152 0.848 37 H 0.125 0.875 38 H 0.047 0.953 39 H 0.054 0.946 40 H 0.206 0.794 41 H 0.061 0.939 42 H 0.185 0.815 43 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -27.645 -0.445 13.873 30.934 hybrid contribution 0.628 -1.151 -0.353 1.358 sum -27.017 -1.596 13.520 30.253 Atomic orbital electron populations 1.21936 0.86105 1.06967 1.06879 1.22078 0.92964 0.82117 0.73472 1.90789 1.71678 1.33049 1.49570 1.43559 1.03417 1.11324 1.72788 1.17627 0.84920 0.97022 1.00413 1.21120 0.92647 0.97742 0.96368 1.19819 0.93409 0.97554 1.03532 1.18434 0.82521 0.85004 0.79641 1.90780 1.71746 1.39113 1.44374 1.45809 1.05242 1.29274 1.55429 1.20290 0.87747 0.90842 0.97794 1.22746 0.92869 1.02637 0.99764 1.23018 0.95086 0.97545 0.99259 1.19914 0.91073 0.89298 0.94986 1.42516 1.08572 1.32267 1.55305 1.19642 0.87854 1.08532 1.22143 0.90378 1.25607 1.02130 0.98958 1.00058 1.69813 1.35549 1.22278 1.34312 0.85175 0.79700 0.77140 0.77504 1.20105 1.22191 1.20456 1.21480 1.01843 0.91164 0.93495 1.21306 0.90601 1.01185 1.01750 1.17750 0.90404 0.87724 0.96255 1.91522 1.77897 1.59496 1.81595 0.86438 0.88439 0.86592 0.72850 0.84987 0.74591 0.91996 0.90126 0.84791 0.87519 0.95257 0.94649 0.79392 0.93946 0.81470 0.80212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.87 10.31 71.23 0.73 -0.13 16 2 C 0.50 8.31 7.78 87.66 0.68 8.99 16 3 O -0.57 -15.99 14.51 -3.07 -0.04 -16.03 16 4 N -0.66 -9.15 5.22 -303.43 -1.59 -10.74 16 5 C 0.10 1.83 6.31 38.12 0.24 2.07 16 6 C -0.06 -1.44 8.24 22.64 0.19 -1.26 16 7 C -0.14 -3.20 5.87 -20.10 -0.12 -3.32 16 8 C 0.56 15.49 7.77 86.76 0.67 16.16 16 9 O -0.58 -21.20 16.34 -3.96 -0.06 -21.26 16 10 N -0.71 -16.01 5.50 -469.82 -2.58 -18.59 16 11 C 0.16 3.82 6.11 85.63 0.52 4.34 16 12 C -0.16 -3.97 9.24 25.64 0.24 -3.74 16 13 C -0.13 -4.03 9.24 25.64 0.24 -3.79 16 14 C 0.17 6.68 6.70 85.63 0.57 7.26 16 15 N -0.74 -37.49 5.59 -347.20 -1.94 -39.44 16 16 C -0.25 -13.84 9.99 84.03 0.84 -13.00 16 17 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 18 C -0.08 -4.28 5.50 84.86 0.47 -3.81 16 19 N -0.97 -58.91 13.06 21.65 0.28 -58.62 16 20 Si 0.98 45.44 29.55 68.60 2.03 47.47 16 21 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 22 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 23 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 24 C -0.06 -0.92 9.53 22.53 0.21 -0.71 16 25 C -0.13 -1.66 10.00 22.25 0.22 -1.44 16 26 C 0.10 1.56 7.31 22.57 0.17 1.73 16 27 F -0.13 -1.75 16.95 44.97 0.76 -0.99 16 28 H 0.12 0.26 8.14 -2.39 -0.02 0.24 16 29 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.12 -0.10 8.14 -2.39 -0.02 -0.12 16 31 H 0.43 2.69 8.66 -92.71 -0.80 1.89 16 32 H 0.13 4.17 5.78 -2.91 -0.02 4.15 16 33 H 0.42 7.05 6.49 -92.71 -0.60 6.45 16 34 H 0.06 1.69 7.79 -2.39 -0.02 1.67 16 35 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.13 2.87 7.84 -2.91 -0.02 2.85 16 37 H 0.11 3.38 7.84 -2.91 -0.02 3.35 16 38 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 39 H 0.04 1.31 7.79 -2.39 -0.02 1.29 16 40 H 0.37 20.14 7.66 -92.71 -0.71 19.43 16 41 H 0.25 14.85 8.31 -92.71 -0.77 14.07 16 42 H 0.17 1.61 6.39 -2.91 -0.02 1.59 16 43 H 0.18 1.21 8.06 -2.91 -0.02 1.19 16 Total: -1.00 -81.25 379.11 1.71 -79.54 By element: Atomic # 1 Polarization: 30.33 SS G_CDS: -1.03 Total: 29.31 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: 5.88 Total: 9.35 kcal Atomic # 7 Polarization: -121.56 SS G_CDS: -5.83 Total: -127.38 kcal Atomic # 8 Polarization: -37.19 SS G_CDS: -0.11 Total: -37.30 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.76 Total: -0.99 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -81.25 1.71 -79.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669213952.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.247 kcal (2) G-P(sol) polarization free energy of solvation -81.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds