Wall clock time and date at job start Tue Mar 31 2020 18:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47411 * 2 1 4 4 C 1.53001 * 109.46856 * 119.99539 * 2 1 3 5 5 C 1.53005 * 109.46736 * 184.99974 * 4 2 1 6 6 N 1.46507 * 109.46910 * 180.02562 * 5 4 2 7 7 C 1.34778 * 120.00094 * 180.02562 * 6 5 4 8 8 O 1.21596 * 119.99664 * 359.97438 * 7 6 5 9 9 C 1.47522 * 120.00096 * 180.02562 * 7 6 5 10 10 N 1.34400 * 125.77035 * 359.97438 * 9 7 6 11 11 N 1.28757 * 109.52600 * 179.75020 * 10 9 7 12 12 N 1.40212 * 108.36220 * 0.39446 * 11 10 9 13 13 C 1.46506 * 126.59502 * 179.87705 * 12 11 10 14 14 C 1.34813 * 106.81208 * 359.60984 * 12 11 10 15 15 C 1.50703 * 126.57851 * 180.19043 * 14 12 11 16 16 F 1.39896 * 109.47289 * 30.02760 * 15 14 12 17 17 F 1.39903 * 109.46716 * 150.02733 * 15 14 12 18 18 F 1.39898 * 109.47061 * 270.02452 * 15 14 12 19 19 N 1.46501 * 109.47144 * 239.99561 * 2 1 3 20 20 C 1.36940 * 119.99682 * 85.00091 * 19 2 1 21 21 H 1.08000 * 120.00041 * 359.97438 * 20 19 2 22 22 C 1.38807 * 119.99651 * 179.97438 * 20 19 2 23 23 N 1.31620 * 120.00001 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 120.00220 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47416 * 89.99927 * 24 22 20 26 26 H 1.48504 * 109.47171 * 209.99926 * 24 22 20 27 27 H 1.48493 * 109.47200 * 329.99765 * 24 22 20 28 28 H 1.09003 * 109.47624 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47267 * 300.00211 * 1 2 3 30 30 H 1.09000 * 109.47125 * 59.99984 * 1 2 3 31 31 H 1.09007 * 109.46980 * 65.00352 * 4 2 1 32 32 H 1.08998 * 109.47726 * 304.99646 * 4 2 1 33 33 H 1.08993 * 109.47007 * 60.00558 * 5 4 2 34 34 H 1.08998 * 109.47199 * 299.99990 * 5 4 2 35 35 H 0.97000 * 119.99881 * 359.97438 * 6 5 4 36 36 H 1.09001 * 109.47060 * 269.68817 * 13 12 11 37 37 H 1.09004 * 109.47073 * 29.68306 * 13 12 11 38 38 H 1.09000 * 109.47212 * 149.68389 * 13 12 11 39 39 H 0.96995 * 119.99881 * 264.99720 * 19 2 1 40 40 H 0.96997 * 120.00116 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3137 6 7 4.0531 -1.3042 2.5097 7 6 5.3740 -1.3397 2.7754 8 8 6.1603 -0.7985 2.0222 9 6 5.8658 -2.0360 3.9793 10 7 5.1036 -2.6705 4.8864 11 7 5.8544 -3.1714 5.8046 12 7 7.1872 -2.8525 5.5082 13 6 8.3688 -3.2227 6.2912 14 6 7.1728 -2.1449 4.3608 15 6 8.3693 -1.5813 3.6382 16 9 9.4821 -2.3959 3.8728 17 9 8.1058 -1.5358 2.2650 18 9 8.6304 -0.2889 4.1060 19 7 2.0183 -0.6907 -1.1961 20 6 2.1491 -0.0076 -2.3757 21 1 1.8918 1.0402 -2.4244 22 6 2.6123 -0.6619 -3.5089 23 7 2.7385 -0.0052 -4.6426 24 14 3.0565 -2.4743 -3.4250 25 1 1.8594 -3.2928 -3.7449 26 1 4.1324 -2.7662 -4.4061 27 1 3.5310 -2.8048 -2.0572 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.7515 -1.7715 1.2057 32 1 1.6053 -0.2616 2.1370 33 1 3.8531 0.4370 1.3574 34 1 3.9994 -1.0728 0.4261 35 1 3.4258 -1.7357 3.1107 36 1 8.5778 -2.4432 7.0240 37 1 8.1826 -4.1651 6.8064 38 1 9.2249 -3.3352 5.6260 39 1 2.2490 -1.6318 -1.1525 40 1 3.0618 -0.4625 -5.4346 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674242067.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:22 Heat of formation + Delta-G solvation = -65.186316 kcal Electronic energy + Delta-G solvation = -29383.442028 eV Core-core repulsion = 24628.764519 eV Total energy + Delta-G solvation = -4754.677509 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.131 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -50.63817 -48.25888 -47.92009 -42.95727 -39.49610 -36.77723 -35.50701 -34.52235 -32.46633 -32.17832 -29.97440 -28.97155 -28.04662 -26.87464 -24.48431 -23.45547 -22.66202 -22.11512 -20.90228 -19.96977 -19.06480 -19.03447 -18.68896 -18.02803 -17.44534 -16.96111 -16.29312 -15.76610 -15.57609 -15.18786 -14.93238 -14.75344 -14.53517 -14.35320 -14.24163 -14.07590 -14.05762 -13.92632 -13.82811 -13.48479 -13.33207 -12.93333 -12.51362 -12.39853 -12.16892 -12.01105 -11.92109 -11.23007 -11.17514 -11.03384 -10.77150 -10.63541 -10.44851 -10.15489 -10.04263 -9.91997 -9.53940 -9.01257 -8.88789 -7.23319 -5.72058 -3.07590 0.07636 1.03711 1.12867 1.96195 2.87531 2.94254 2.99444 3.37708 3.42210 3.44815 3.50245 3.68467 3.80012 3.93354 4.31926 4.33230 4.64035 4.64311 4.68847 5.03820 5.16330 5.21507 5.37624 5.50647 5.60827 5.64738 5.98327 6.08569 6.23330 6.26795 6.35158 6.49788 6.52092 6.80888 7.00271 7.09239 7.44528 8.03836 8.04729 8.46958 9.25291 9.97861 10.16954 11.46465 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.015514 B = 0.003005 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.415210 B = 9314.081817 C =10196.904872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.180 3.820 3 H 0.059 0.941 4 C -0.137 4.137 5 C 0.120 3.880 6 N -0.706 5.706 7 C 0.585 3.415 8 O -0.509 6.509 9 C -0.025 4.025 10 N -0.200 5.200 11 N -0.027 5.027 12 N -0.325 5.325 13 C 0.065 3.935 14 C 0.003 3.997 15 C 0.546 3.454 16 F -0.175 7.175 17 F -0.119 7.119 18 F -0.159 7.159 19 N -0.748 5.748 20 C -0.241 4.241 21 H 0.091 0.909 22 C 0.005 3.995 23 N -0.935 5.935 24 Si 0.882 3.118 25 H -0.286 1.286 26 H -0.292 1.292 27 H -0.277 1.277 28 H 0.045 0.955 29 H 0.039 0.961 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.406 0.594 36 H 0.101 0.899 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.360 0.640 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.419 -6.652 26.660 29.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.070 3.930 3 H 0.077 0.923 4 C -0.176 4.176 5 C -0.002 4.002 6 N -0.356 5.356 7 C 0.366 3.634 8 O -0.383 6.383 9 C -0.166 4.166 10 N -0.071 5.071 11 N -0.007 5.007 12 N -0.112 5.112 13 C -0.075 4.075 14 C -0.136 4.136 15 C 0.489 3.511 16 F -0.156 7.156 17 F -0.100 7.100 18 F -0.141 7.141 19 N -0.392 5.392 20 C -0.371 4.371 21 H 0.108 0.892 22 C -0.191 4.191 23 N -0.582 5.582 24 Si 0.713 3.287 25 H -0.212 1.212 26 H -0.218 1.218 27 H -0.203 1.203 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.103 0.897 35 H 0.241 0.759 36 H 0.119 0.881 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.193 0.807 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 11.111 -6.764 26.900 29.880 hybrid contribution 0.951 -1.169 -0.299 1.537 sum 12.062 -7.933 26.601 30.266 Atomic orbital electron populations 1.22392 0.98558 1.00895 1.00546 1.20120 0.92095 0.95880 0.84873 0.92307 1.22130 0.93648 1.01964 0.99838 1.21596 0.94653 0.97645 0.86325 1.45887 1.06275 1.55895 1.27575 1.16708 0.83547 0.80410 0.82724 1.90976 1.54719 1.44972 1.47607 1.21564 0.88406 1.06560 1.00103 1.74750 1.25812 1.06835 0.99751 1.82093 0.82001 1.18870 1.17714 1.50313 1.10234 1.34864 1.15785 1.22730 0.83201 1.04502 0.97073 1.21662 0.96695 1.02793 0.92464 1.16908 0.79186 0.75930 0.79105 1.93149 1.55322 1.72890 1.94262 1.93506 1.92965 1.95795 1.27712 1.93288 1.94102 1.38139 1.88521 1.42837 1.79683 1.09445 1.07235 1.19057 1.36852 0.95600 0.85557 0.89163 1.24651 1.01427 0.97381 0.95603 1.69696 1.52751 1.35529 1.00271 0.86580 0.78028 0.86989 0.77105 1.21239 1.21806 1.20305 0.93608 0.94184 0.92221 0.91540 0.91185 0.90767 0.89720 0.75948 0.88109 0.86825 0.86991 0.80687 0.93113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.72 9.49 37.15 0.35 -2.36 16 2 C 0.18 3.25 2.89 -67.93 -0.20 3.06 16 3 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 4 C -0.14 -1.93 4.87 -26.73 -0.13 -2.06 16 5 C 0.12 1.85 5.56 -4.04 -0.02 1.83 16 6 N -0.71 -9.45 5.55 -61.35 -0.34 -9.80 16 7 C 0.58 8.65 7.76 -12.48 -0.10 8.55 16 8 O -0.51 -9.03 13.05 5.28 0.07 -8.96 16 9 C -0.02 -0.31 6.96 -83.55 -0.58 -0.89 16 10 N -0.20 -2.39 12.04 32.84 0.40 -1.99 16 11 N -0.03 -0.28 13.78 60.35 0.83 0.55 16 12 N -0.33 -2.77 4.03 -63.58 -0.26 -3.03 16 13 C 0.07 0.22 11.24 59.85 0.67 0.89 16 14 C 0.00 0.04 6.46 -81.88 -0.53 -0.49 16 15 C 0.55 5.90 3.24 36.01 0.12 6.01 16 16 F -0.17 -1.45 14.67 2.25 0.03 -1.42 16 17 F -0.12 -1.68 13.42 2.25 0.03 -1.65 16 18 F -0.16 -1.74 17.30 2.25 0.04 -1.70 16 19 N -0.75 -17.14 4.38 -53.43 -0.23 -17.37 16 20 C -0.24 -6.71 10.41 -15.06 -0.16 -6.86 16 21 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 22 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 23 N -0.93 -29.60 13.97 55.49 0.78 -28.82 16 24 Si 0.88 22.44 27.74 -169.99 -4.71 17.72 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 26 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 27 H -0.28 -6.65 6.52 56.52 0.37 -6.28 16 28 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.08 1.59 7.75 -51.93 -0.40 1.18 16 35 H 0.41 4.49 8.16 -40.82 -0.33 4.15 16 36 H 0.10 0.16 8.14 -51.93 -0.42 -0.26 16 37 H 0.11 0.17 8.14 -51.93 -0.42 -0.25 16 38 H 0.11 0.30 5.69 -51.93 -0.30 0.01 16 39 H 0.36 8.20 5.66 -40.82 -0.23 7.97 16 40 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 LS Contribution 351.90 15.07 5.30 5.30 Total: -1.00 -34.30 351.90 -3.39 -37.69 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -4.65 Total: 5.75 kcal Atomic # 6 Polarization: 8.39 SS G_CDS: -0.67 Total: 7.72 kcal Atomic # 7 Polarization: -61.63 SS G_CDS: 1.17 Total: -60.46 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.07 Total: -8.96 kcal Atomic # 9 Polarization: -4.88 SS G_CDS: 0.10 Total: -4.78 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.71 Total: 17.72 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.30 -3.39 -37.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674242067.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.494 kcal (2) G-P(sol) polarization free energy of solvation -34.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds