Wall clock time and date at job start Tue Mar 31 2020 18:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47411 * 2 1 4 4 C 1.53001 * 109.46856 * 119.99539 * 2 1 3 5 5 C 1.53005 * 109.46736 * 184.99974 * 4 2 1 6 6 N 1.46507 * 109.46910 * 180.02562 * 5 4 2 7 7 C 1.34778 * 120.00094 * 180.02562 * 6 5 4 8 8 O 1.21596 * 119.99664 * 359.97438 * 7 6 5 9 9 C 1.47522 * 120.00096 * 180.02562 * 7 6 5 10 10 N 1.34400 * 125.77035 * 359.97438 * 9 7 6 11 11 N 1.28757 * 109.52600 * 179.75020 * 10 9 7 12 12 N 1.40212 * 108.36220 * 0.39446 * 11 10 9 13 13 C 1.46506 * 126.59502 * 179.87705 * 12 11 10 14 14 C 1.34813 * 106.81208 * 359.60984 * 12 11 10 15 15 C 1.50703 * 126.57851 * 180.19043 * 14 12 11 16 16 F 1.39896 * 109.47289 * 30.02760 * 15 14 12 17 17 F 1.39903 * 109.46716 * 150.02733 * 15 14 12 18 18 F 1.39898 * 109.47061 * 270.02452 * 15 14 12 19 19 N 1.46501 * 109.47144 * 239.99561 * 2 1 3 20 20 C 1.36940 * 119.99682 * 85.00091 * 19 2 1 21 21 H 1.08000 * 120.00041 * 359.97438 * 20 19 2 22 22 C 1.38807 * 119.99651 * 179.97438 * 20 19 2 23 23 N 1.31620 * 120.00001 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 120.00220 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47416 * 89.99927 * 24 22 20 26 26 H 1.48504 * 109.47171 * 209.99926 * 24 22 20 27 27 H 1.48493 * 109.47200 * 329.99765 * 24 22 20 28 28 H 1.09003 * 109.47624 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47267 * 300.00211 * 1 2 3 30 30 H 1.09000 * 109.47125 * 59.99984 * 1 2 3 31 31 H 1.09007 * 109.46980 * 65.00352 * 4 2 1 32 32 H 1.08998 * 109.47726 * 304.99646 * 4 2 1 33 33 H 1.08993 * 109.47007 * 60.00558 * 5 4 2 34 34 H 1.08998 * 109.47199 * 299.99990 * 5 4 2 35 35 H 0.97000 * 119.99881 * 359.97438 * 6 5 4 36 36 H 1.09001 * 109.47060 * 269.68817 * 13 12 11 37 37 H 1.09004 * 109.47073 * 29.68306 * 13 12 11 38 38 H 1.09000 * 109.47212 * 149.68389 * 13 12 11 39 39 H 0.96995 * 119.99881 * 264.99720 * 19 2 1 40 40 H 0.96997 * 120.00116 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3137 6 7 4.0531 -1.3042 2.5097 7 6 5.3740 -1.3397 2.7754 8 8 6.1603 -0.7985 2.0222 9 6 5.8658 -2.0360 3.9793 10 7 5.1036 -2.6705 4.8864 11 7 5.8544 -3.1714 5.8046 12 7 7.1872 -2.8525 5.5082 13 6 8.3688 -3.2227 6.2912 14 6 7.1728 -2.1449 4.3608 15 6 8.3693 -1.5813 3.6382 16 9 9.4821 -2.3959 3.8728 17 9 8.1058 -1.5358 2.2650 18 9 8.6304 -0.2889 4.1060 19 7 2.0183 -0.6907 -1.1961 20 6 2.1491 -0.0076 -2.3757 21 1 1.8918 1.0402 -2.4244 22 6 2.6123 -0.6619 -3.5089 23 7 2.7385 -0.0052 -4.6426 24 14 3.0565 -2.4743 -3.4250 25 1 1.8594 -3.2928 -3.7449 26 1 4.1324 -2.7662 -4.4061 27 1 3.5310 -2.8048 -2.0572 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.7515 -1.7715 1.2057 32 1 1.6053 -0.2616 2.1370 33 1 3.8531 0.4370 1.3574 34 1 3.9994 -1.0728 0.4261 35 1 3.4258 -1.7357 3.1107 36 1 8.5778 -2.4432 7.0240 37 1 8.1826 -4.1651 6.8064 38 1 9.2249 -3.3352 5.6260 39 1 2.2490 -1.6318 -1.1525 40 1 3.0618 -0.4625 -5.4346 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674242067.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:21 Heat of formation + Delta-G solvation = -91.697825 kcal Electronic energy + Delta-G solvation = -29384.591653 eV Core-core repulsion = 24628.764519 eV Total energy + Delta-G solvation = -4755.827134 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.131 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -51.48132 -49.05509 -48.85792 -43.77290 -40.64812 -38.27621 -36.28073 -35.84495 -34.18385 -33.26152 -31.66404 -30.12044 -28.92894 -27.67595 -25.77930 -25.07681 -23.76858 -23.05597 -22.02247 -21.43151 -19.99562 -19.88308 -19.62142 -19.51503 -18.81257 -17.72222 -17.23203 -16.98095 -16.79788 -16.35572 -15.93904 -15.83967 -15.66058 -15.44982 -15.26112 -15.21563 -15.07241 -14.97514 -14.68713 -14.63625 -14.41479 -14.18248 -14.00062 -13.68721 -13.55402 -13.15908 -12.89142 -12.76173 -12.58908 -12.26594 -12.22470 -12.04420 -11.84672 -11.75278 -11.63251 -11.28823 -10.96227 -10.89693 -10.18048 -9.26563 -7.98468 -5.29877 -0.73796 0.21094 0.31982 1.20187 1.37928 1.41490 1.47812 1.83825 1.89243 2.15515 2.50920 2.54501 2.87792 2.95497 3.10195 3.34087 3.49738 3.65792 3.94516 3.99621 4.14445 4.19775 4.30618 4.36629 4.49802 4.67959 4.76297 4.77641 4.85691 5.02753 5.09316 5.16205 5.32826 5.39549 5.61637 5.83972 6.18097 6.26475 6.45674 6.97505 7.13586 7.90901 8.08141 9.23704 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.015514 B = 0.003005 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.415210 B = 9314.081817 C =10196.904872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.170 3.830 3 H 0.046 0.954 4 C -0.121 4.121 5 C 0.127 3.873 6 N -0.693 5.693 7 C 0.582 3.418 8 O -0.545 6.545 9 C -0.042 4.042 10 N -0.208 5.208 11 N -0.030 5.030 12 N -0.305 5.305 13 C 0.049 3.951 14 C 0.003 3.997 15 C 0.550 3.450 16 F -0.158 7.158 17 F -0.142 7.142 18 F -0.161 7.161 19 N -0.751 5.751 20 C -0.218 4.218 21 H 0.058 0.942 22 C -0.067 4.067 23 N -0.987 5.987 24 Si 0.950 3.050 25 H -0.277 1.277 26 H -0.302 1.302 27 H -0.255 1.255 28 H 0.053 0.947 29 H 0.077 0.923 30 H 0.029 0.971 31 H 0.080 0.920 32 H 0.109 0.891 33 H 0.064 0.936 34 H 0.049 0.951 35 H 0.419 0.581 36 H 0.126 0.874 37 H 0.138 0.862 38 H 0.121 0.879 39 H 0.364 0.636 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.566 -8.604 30.205 33.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.062 3.938 3 H 0.064 0.936 4 C -0.159 4.159 5 C 0.004 3.996 6 N -0.345 5.345 7 C 0.365 3.635 8 O -0.422 6.422 9 C -0.184 4.184 10 N -0.079 5.079 11 N -0.010 5.010 12 N -0.092 5.092 13 C -0.088 4.088 14 C -0.138 4.138 15 C 0.493 3.507 16 F -0.139 7.139 17 F -0.123 7.123 18 F -0.142 7.142 19 N -0.395 5.395 20 C -0.350 4.350 21 H 0.076 0.924 22 C -0.258 4.258 23 N -0.639 5.639 24 Si 0.778 3.222 25 H -0.203 1.203 26 H -0.229 1.229 27 H -0.180 1.180 28 H 0.072 0.928 29 H 0.096 0.904 30 H 0.048 0.952 31 H 0.099 0.901 32 H 0.127 0.873 33 H 0.082 0.918 34 H 0.067 0.933 35 H 0.257 0.743 36 H 0.144 0.856 37 H 0.156 0.844 38 H 0.139 0.861 39 H 0.197 0.803 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 11.225 -8.745 30.560 33.710 hybrid contribution 0.969 -0.487 -1.239 1.646 sum 12.194 -9.232 29.321 33.070 Atomic orbital electron populations 1.22253 0.96733 1.01561 1.00961 1.20412 0.93283 0.95400 0.84744 0.93620 1.21991 0.92323 1.02639 0.98989 1.21342 0.95568 0.96849 0.85846 1.45695 1.06302 1.55475 1.27001 1.16998 0.83519 0.79946 0.83026 1.90959 1.55611 1.46585 1.49035 1.21240 0.89280 1.07890 1.00021 1.74720 1.26250 1.07091 0.99814 1.82027 0.82791 1.18817 1.17387 1.50667 1.10801 1.32868 1.14851 1.23291 0.81541 1.06593 0.97396 1.21577 0.96053 1.02985 0.93159 1.16828 0.79720 0.76086 0.78069 1.93181 1.54386 1.72302 1.94050 1.93459 1.93241 1.95931 1.29630 1.93283 1.94136 1.38383 1.88377 1.42872 1.79893 1.09580 1.07177 1.19032 1.34216 0.94432 0.87289 0.92419 1.25434 1.02809 1.02178 0.95371 1.69877 1.55253 1.37564 1.01182 0.85481 0.77553 0.81394 0.77787 1.20331 1.22883 1.17964 0.92774 0.90429 0.95180 0.90105 0.87303 0.91800 0.93262 0.74317 0.85636 0.84383 0.86085 0.80320 0.93592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.81 9.49 71.98 0.68 -4.12 16 2 C 0.17 5.89 2.89 44.99 0.13 6.02 16 3 H 0.05 1.71 8.08 -2.39 -0.02 1.69 16 4 C -0.12 -3.08 4.87 30.60 0.15 -2.93 16 5 C 0.13 3.81 5.56 86.38 0.48 4.29 16 6 N -0.69 -17.65 5.55 -466.26 -2.59 -20.23 16 7 C 0.58 16.96 7.76 86.69 0.67 17.63 16 8 O -0.55 -19.66 13.05 -4.02 -0.05 -19.71 16 9 C -0.04 -1.01 6.96 40.81 0.28 -0.73 16 10 N -0.21 -4.58 12.04 -50.00 -0.60 -5.18 16 11 N -0.03 -0.56 13.78 37.02 0.51 -0.05 16 12 N -0.31 -4.41 4.03 -355.08 -1.43 -5.84 16 13 C 0.05 0.16 11.24 127.77 1.44 1.60 16 14 C 0.00 0.07 6.46 41.72 0.27 0.34 16 15 C 0.55 11.31 3.24 71.24 0.23 11.54 16 16 F -0.16 -2.32 14.67 44.97 0.66 -1.66 16 17 F -0.14 -4.03 13.42 44.97 0.60 -3.43 16 18 F -0.16 -3.36 17.30 44.97 0.78 -2.58 16 19 N -0.75 -34.07 4.38 -322.95 -1.41 -35.48 16 20 C -0.22 -12.45 10.41 84.03 0.87 -11.57 16 21 H 0.06 3.60 8.06 -2.91 -0.02 3.58 16 22 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 23 N -0.99 -64.81 13.97 21.65 0.30 -64.50 16 24 Si 0.95 46.94 27.74 68.60 1.90 48.85 16 25 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 26 H -0.30 -15.33 7.11 99.48 0.71 -14.62 16 27 H -0.25 -11.50 6.52 99.48 0.65 -10.86 16 28 H 0.05 1.58 8.14 -2.39 -0.02 1.57 16 29 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 30 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 32 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.05 1.84 7.75 -2.39 -0.02 1.82 16 35 H 0.42 8.29 8.16 -92.71 -0.76 7.53 16 36 H 0.13 -0.09 8.14 -2.39 -0.02 -0.11 16 37 H 0.14 -0.14 8.14 -2.38 -0.02 -0.16 16 38 H 0.12 0.25 5.69 -2.39 -0.01 0.23 16 39 H 0.36 16.01 5.66 -92.71 -0.52 15.49 16 40 H 0.26 16.05 8.31 -92.71 -0.77 15.28 16 Total: -1.00 -77.76 351.90 4.13 -73.63 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: -0.22 Total: 17.68 kcal Atomic # 6 Polarization: 12.82 SS G_CDS: 5.68 Total: 18.50 kcal Atomic # 7 Polarization: -126.06 SS G_CDS: -5.22 Total: -131.29 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -0.05 Total: -19.71 kcal Atomic # 9 Polarization: -9.71 SS G_CDS: 2.04 Total: -7.67 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 1.90 Total: 48.85 kcal Total: -77.76 4.13 -73.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674242067.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.065 kcal (2) G-P(sol) polarization free energy of solvation -77.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds