Wall clock time and date at job start Tue Mar 31 2020 18:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46885 * 2 1 4 4 C 1.53002 * 109.47230 * 119.99725 * 2 1 3 5 5 N 1.46497 * 109.46880 * 175.00444 * 4 2 1 6 6 C 1.34780 * 119.99694 * 180.02562 * 5 4 2 7 7 O 1.21274 * 120.00030 * 359.97438 * 6 5 4 8 8 C 1.50705 * 119.99649 * 179.97438 * 6 5 4 9 9 C 1.50700 * 109.46647 * 179.97438 * 8 6 5 10 10 N 1.29748 * 126.28813 * 269.95350 * 9 8 6 11 11 O 1.41350 * 109.73406 * 180.02562 * 10 9 8 12 12 C 1.34899 * 109.33095 * 0.02562 * 11 10 9 13 13 C 1.38956 * 133.33274 * 179.97438 * 12 11 10 14 14 C 1.37754 * 119.97205 * 180.02562 * 13 12 11 15 15 C 1.38994 * 120.57948 * 0.02562 * 14 13 12 16 16 F 1.35101 * 119.84180 * 180.02562 * 15 14 13 17 17 C 1.37801 * 120.31941 * 359.97438 * 15 14 13 18 18 C 1.39720 * 119.65495 * 0.02562 * 17 15 14 19 19 N 1.46501 * 109.47436 * 240.00434 * 2 1 3 20 20 C 1.46502 * 119.99662 * 299.99618 * 19 2 1 21 21 C 1.36932 * 120.00253 * 119.99844 * 19 2 1 22 22 H 1.07997 * 120.00104 * 327.90129 * 21 19 2 23 23 C 1.38812 * 119.99746 * 147.91121 * 21 19 2 24 24 N 1.31624 * 119.99780 * 152.74092 * 23 21 19 25 25 Si 1.86797 * 120.00022 * 332.73356 * 23 21 19 26 26 H 1.48497 * 109.47027 * 95.39800 * 25 23 21 27 27 H 1.48501 * 109.47064 * 215.39443 * 25 23 21 28 28 H 1.48497 * 109.47192 * 335.39050 * 25 23 21 29 29 H 1.08997 * 109.47474 * 299.99880 * 1 2 3 30 30 H 1.09002 * 109.47105 * 60.00150 * 1 2 3 31 31 H 1.09001 * 109.46885 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.46742 * 55.00367 * 4 2 1 33 33 H 1.08999 * 109.47340 * 295.00117 * 4 2 1 34 34 H 0.97003 * 120.00283 * 359.97438 * 5 4 2 35 35 H 1.09001 * 109.47158 * 59.99753 * 8 6 5 36 36 H 1.08999 * 109.46976 * 299.99529 * 8 6 5 37 37 H 1.08005 * 120.01406 * 359.74334 * 13 12 11 38 38 H 1.07998 * 119.70886 * 179.97438 * 14 13 12 39 39 H 1.07999 * 120.17397 * 180.02562 * 17 15 14 40 40 H 1.08995 * 109.47258 * 95.16585 * 20 19 2 41 41 H 1.08997 * 109.47166 * 215.17532 * 20 19 2 42 42 H 1.09004 * 109.46978 * 335.17587 * 20 19 2 43 43 H 0.97003 * 119.99601 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 7 3.5001 -0.8262 1.1906 6 6 4.1731 -1.4289 2.1908 7 8 3.5700 -1.8839 3.1395 8 6 5.6750 -1.5375 2.1301 9 6 6.1773 -2.2477 3.3607 10 7 6.5203 -1.6920 4.4818 11 8 6.9390 -2.6838 5.3977 12 6 6.8495 -3.8968 4.8142 13 6 7.1274 -5.1870 5.2490 14 6 6.9316 -6.2557 4.4023 15 6 6.4571 -6.0571 3.1110 16 9 6.2700 -7.1161 2.2932 17 6 6.1757 -4.7854 2.6612 18 6 6.3701 -3.6930 3.5103 19 7 2.0184 -0.6905 -1.1962 20 6 1.6646 -2.0931 -1.4281 21 6 2.8057 -0.0250 -2.0975 22 1 2.6683 1.0345 -2.2556 23 6 3.7801 -0.7122 -2.8082 24 7 4.1576 -0.2808 -3.9931 25 14 4.5557 -2.2490 -2.0830 26 1 3.8491 -3.4498 -2.5969 27 1 5.9872 -2.3123 -2.4731 28 1 4.4476 -2.2067 -0.6026 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6055 -1.7197 1.2952 33 1 1.7517 -0.1583 2.1370 34 1 3.9824 -0.4626 0.4316 35 1 6.1098 -0.5390 2.0843 36 1 5.9630 -2.1003 1.2423 37 1 7.5012 -5.3513 6.2489 38 1 7.1494 -7.2566 4.7445 39 1 5.8067 -4.6338 1.6576 40 1 0.7897 -2.1448 -2.0760 41 1 2.5007 -2.6047 -1.9047 42 1 1.4400 -2.5734 -0.4756 43 1 4.8388 -0.7609 -4.4895 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675015363.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:36 Heat of formation + Delta-G solvation = 14.960215 kcal Electronic energy + Delta-G solvation = -29027.965420 eV Core-core repulsion = 24798.700105 eV Total energy + Delta-G solvation = -4229.265316 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.15839 -42.05461 -39.53452 -37.75721 -37.10739 -34.76565 -33.90058 -32.29892 -31.11483 -30.47808 -30.02795 -29.46633 -26.30630 -25.70672 -23.96222 -23.32818 -23.00813 -21.35403 -20.06594 -19.43088 -18.50590 -17.63487 -17.11932 -17.03332 -16.88274 -16.16774 -15.81739 -15.75286 -15.63542 -15.56170 -15.05702 -14.60952 -14.22170 -13.87965 -13.86248 -13.45440 -13.24009 -13.11369 -12.76423 -12.63037 -12.44312 -12.29517 -12.22432 -12.17251 -11.92519 -11.76556 -11.43483 -11.31923 -11.26727 -10.89912 -10.64743 -10.23874 -10.10877 -9.79938 -9.66701 -9.38551 -8.75935 -8.65858 -8.63399 -7.08422 -6.16876 -3.50628 0.18925 0.73050 1.68224 2.20290 2.74566 3.02404 3.16379 3.23404 3.34407 3.41781 3.68439 3.80108 4.03794 4.14973 4.35589 4.51013 4.69512 4.79618 4.89393 4.98258 5.03612 5.10449 5.13542 5.35692 5.37510 5.45294 5.56391 5.60920 5.68334 5.73130 5.88707 5.96210 6.02419 6.18369 6.23605 6.24357 6.44831 6.58863 6.65323 6.68944 6.82777 6.94074 7.80959 7.84467 8.19864 8.41462 8.80588 9.55219 9.94930 10.98652 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012921 B = 0.003685 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.451023 B = 7597.264143 C = 8465.610420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.157 3.843 3 H 0.079 0.921 4 C 0.103 3.897 5 N -0.700 5.700 6 C 0.517 3.483 7 O -0.548 6.548 8 C -0.084 4.084 9 C 0.164 3.836 10 N -0.268 5.268 11 O -0.087 6.087 12 C 0.076 3.924 13 C -0.096 4.096 14 C -0.095 4.095 15 C 0.071 3.929 16 F -0.133 7.133 17 C -0.071 4.071 18 C -0.156 4.156 19 N -0.603 5.603 20 C 0.112 3.888 21 C -0.278 4.278 22 H 0.081 0.919 23 C 0.037 3.963 24 N -0.890 5.890 25 Si 0.870 3.130 26 H -0.288 1.288 27 H -0.304 1.304 28 H -0.262 1.262 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.415 0.585 35 H 0.126 0.874 36 H 0.125 0.875 37 H 0.150 0.850 38 H 0.153 0.847 39 H 0.147 0.853 40 H 0.018 0.982 41 H 0.038 0.962 42 H 0.033 0.967 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.807 -8.328 14.517 17.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.050 3.950 3 H 0.097 0.903 4 C -0.023 4.023 5 N -0.352 5.352 6 C 0.300 3.700 7 O -0.426 6.426 8 C -0.125 4.125 9 C -0.018 4.018 10 N -0.010 5.010 11 O -0.097 6.097 12 C 0.022 3.978 13 C -0.115 4.115 14 C -0.115 4.115 15 C 0.051 3.949 16 F -0.111 7.111 17 C -0.092 4.092 18 C -0.160 4.160 19 N -0.327 5.327 20 C -0.032 4.032 21 C -0.405 4.405 22 H 0.099 0.901 23 C -0.165 4.165 24 N -0.530 5.530 25 Si 0.700 3.300 26 H -0.217 1.217 27 H -0.232 1.232 28 H -0.188 1.188 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.253 0.747 35 H 0.144 0.856 36 H 0.143 0.857 37 H 0.168 0.832 38 H 0.171 0.829 39 H 0.165 0.835 40 H 0.036 0.964 41 H 0.056 0.944 42 H 0.052 0.948 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.643 -7.556 15.760 18.084 hybrid contribution 0.570 -1.673 -0.820 1.949 sum 5.213 -9.229 14.940 18.318 Atomic orbital electron populations 1.22141 0.96832 1.01458 1.01168 1.20780 0.92937 0.96427 0.84893 0.90275 1.22028 0.79365 1.01314 0.99592 1.45975 1.08515 1.57826 1.22873 1.19856 0.88208 0.78848 0.83049 1.90715 1.69935 1.48439 1.33557 1.20386 0.95002 1.03496 0.93611 1.23748 0.92601 0.90878 0.94586 1.79902 1.15303 1.06643 0.99160 1.89182 1.74697 1.11419 1.34448 1.20246 0.96972 0.88865 0.91692 1.19804 1.03698 0.86614 1.01425 1.21072 0.98499 1.00237 0.91666 1.17269 1.04604 0.83506 0.89475 1.91541 1.93254 1.54565 1.71765 1.20647 0.98139 0.89608 1.00823 1.20344 1.07912 0.92654 0.95056 1.44132 1.58329 1.08900 1.21368 1.21280 0.98296 0.85889 0.97737 1.18817 1.11131 0.95331 1.15265 0.90126 1.25353 0.97587 0.97554 0.95983 1.69943 1.31684 1.41446 1.09911 0.87145 0.77862 0.84206 0.80749 1.21661 1.23193 1.18759 0.93246 0.92005 0.93158 0.92146 0.92041 0.74653 0.85575 0.85665 0.83204 0.82932 0.83516 0.96401 0.94397 0.94804 0.92596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 9.20 37.16 0.34 -1.98 16 2 C 0.16 2.68 2.87 -67.93 -0.19 2.48 16 3 H 0.08 1.36 7.89 -51.93 -0.41 0.95 16 4 C 0.10 1.67 4.93 -4.04 -0.02 1.65 16 5 N -0.70 -11.62 4.54 -60.30 -0.27 -11.90 16 6 C 0.52 8.57 7.82 -10.98 -0.09 8.48 16 7 O -0.55 -10.74 16.03 5.56 0.09 -10.66 16 8 C -0.08 -1.13 6.30 -29.03 -0.18 -1.32 16 9 C 0.16 2.41 5.95 -80.11 -0.48 1.93 16 10 N -0.27 -4.22 12.81 34.91 0.45 -3.77 16 11 O -0.09 -1.29 12.07 7.46 0.09 -1.20 16 12 C 0.08 0.98 7.48 -38.50 -0.29 0.70 16 13 C -0.10 -0.89 10.06 -39.49 -0.40 -1.28 16 14 C -0.09 -0.82 9.99 -39.48 -0.39 -1.21 16 15 C 0.07 0.79 7.29 -39.46 -0.29 0.50 16 16 F -0.13 -1.55 17.26 2.25 0.04 -1.51 16 17 C -0.07 -0.89 10.08 -39.19 -0.39 -1.28 16 18 C -0.16 -2.14 6.32 -105.17 -0.66 -2.81 16 19 N -0.60 -12.46 1.93 -173.48 -0.33 -12.80 16 20 C 0.11 2.26 8.77 59.85 0.52 2.79 16 21 C -0.28 -6.83 9.56 -15.06 -0.14 -6.98 16 22 H 0.08 2.17 8.06 -52.49 -0.42 1.74 16 23 C 0.04 0.94 5.27 -17.43 -0.09 0.85 16 24 N -0.89 -25.09 13.97 55.49 0.78 -24.32 16 25 Si 0.87 19.25 24.74 -169.99 -4.21 15.05 16 26 H -0.29 -6.66 6.62 56.52 0.37 -6.28 16 27 H -0.30 -6.95 7.11 56.52 0.40 -6.55 16 28 H -0.26 -5.09 5.40 56.52 0.31 -4.78 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.05 0.73 7.67 -51.93 -0.40 0.34 16 32 H 0.06 1.03 6.86 -51.93 -0.36 0.68 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.42 7.09 6.71 -40.82 -0.27 6.82 16 35 H 0.13 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.13 1.49 8.10 -51.93 -0.42 1.07 16 37 H 0.15 0.92 8.06 -52.48 -0.42 0.50 16 38 H 0.15 0.83 8.06 -52.49 -0.42 0.41 16 39 H 0.15 1.72 8.06 -52.49 -0.42 1.30 16 40 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.04 0.83 2.74 -51.93 -0.14 0.69 16 42 H 0.03 0.61 6.54 -51.93 -0.34 0.27 16 43 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 362.13 15.07 5.46 5.46 Total: -1.00 -30.95 362.13 -6.08 -37.03 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -5.41 Total: 6.09 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: -2.76 Total: 2.52 kcal Atomic # 7 Polarization: -53.40 SS G_CDS: 0.61 Total: -52.79 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.18 Total: -11.85 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.04 Total: -1.51 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -4.21 Total: 15.05 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.95 -6.08 -37.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675015363.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.992 kcal (2) G-P(sol) polarization free energy of solvation -30.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds