Wall clock time and date at job start Tue Mar 31 2020 18:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46885 * 2 1 4 4 C 1.53002 * 109.47230 * 119.99725 * 2 1 3 5 5 N 1.46497 * 109.46880 * 175.00444 * 4 2 1 6 6 C 1.34780 * 119.99694 * 180.02562 * 5 4 2 7 7 O 1.21274 * 120.00030 * 359.97438 * 6 5 4 8 8 C 1.50705 * 119.99649 * 179.97438 * 6 5 4 9 9 C 1.50700 * 109.46647 * 179.97438 * 8 6 5 10 10 N 1.29748 * 126.28813 * 269.95350 * 9 8 6 11 11 O 1.41350 * 109.73406 * 180.02562 * 10 9 8 12 12 C 1.34899 * 109.33095 * 0.02562 * 11 10 9 13 13 C 1.38956 * 133.33274 * 179.97438 * 12 11 10 14 14 C 1.37754 * 119.97205 * 180.02562 * 13 12 11 15 15 C 1.38994 * 120.57948 * 0.02562 * 14 13 12 16 16 F 1.35101 * 119.84180 * 180.02562 * 15 14 13 17 17 C 1.37801 * 120.31941 * 359.97438 * 15 14 13 18 18 C 1.39720 * 119.65495 * 0.02562 * 17 15 14 19 19 N 1.46501 * 109.47436 * 240.00434 * 2 1 3 20 20 C 1.46502 * 119.99662 * 299.99618 * 19 2 1 21 21 C 1.36932 * 120.00253 * 119.99844 * 19 2 1 22 22 H 1.07997 * 120.00104 * 327.90129 * 21 19 2 23 23 C 1.38812 * 119.99746 * 147.91121 * 21 19 2 24 24 N 1.31624 * 119.99780 * 152.74092 * 23 21 19 25 25 Si 1.86797 * 120.00022 * 332.73356 * 23 21 19 26 26 H 1.48497 * 109.47027 * 95.39800 * 25 23 21 27 27 H 1.48501 * 109.47064 * 215.39443 * 25 23 21 28 28 H 1.48497 * 109.47192 * 335.39050 * 25 23 21 29 29 H 1.08997 * 109.47474 * 299.99880 * 1 2 3 30 30 H 1.09002 * 109.47105 * 60.00150 * 1 2 3 31 31 H 1.09001 * 109.46885 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.46742 * 55.00367 * 4 2 1 33 33 H 1.08999 * 109.47340 * 295.00117 * 4 2 1 34 34 H 0.97003 * 120.00283 * 359.97438 * 5 4 2 35 35 H 1.09001 * 109.47158 * 59.99753 * 8 6 5 36 36 H 1.08999 * 109.46976 * 299.99529 * 8 6 5 37 37 H 1.08005 * 120.01406 * 359.74334 * 13 12 11 38 38 H 1.07998 * 119.70886 * 179.97438 * 14 13 12 39 39 H 1.07999 * 120.17397 * 180.02562 * 17 15 14 40 40 H 1.08995 * 109.47258 * 95.16585 * 20 19 2 41 41 H 1.08997 * 109.47166 * 215.17532 * 20 19 2 42 42 H 1.09004 * 109.46978 * 335.17587 * 20 19 2 43 43 H 0.97003 * 119.99601 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 7 3.5001 -0.8262 1.1906 6 6 4.1731 -1.4289 2.1908 7 8 3.5700 -1.8839 3.1395 8 6 5.6750 -1.5375 2.1301 9 6 6.1773 -2.2477 3.3607 10 7 6.5203 -1.6920 4.4818 11 8 6.9390 -2.6838 5.3977 12 6 6.8495 -3.8968 4.8142 13 6 7.1274 -5.1870 5.2490 14 6 6.9316 -6.2557 4.4023 15 6 6.4571 -6.0571 3.1110 16 9 6.2700 -7.1161 2.2932 17 6 6.1757 -4.7854 2.6612 18 6 6.3701 -3.6930 3.5103 19 7 2.0184 -0.6905 -1.1962 20 6 1.6646 -2.0931 -1.4281 21 6 2.8057 -0.0250 -2.0975 22 1 2.6683 1.0345 -2.2556 23 6 3.7801 -0.7122 -2.8082 24 7 4.1576 -0.2808 -3.9931 25 14 4.5557 -2.2490 -2.0830 26 1 3.8491 -3.4498 -2.5969 27 1 5.9872 -2.3123 -2.4731 28 1 4.4476 -2.2067 -0.6026 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6055 -1.7197 1.2952 33 1 1.7517 -0.1583 2.1370 34 1 3.9824 -0.4626 0.4316 35 1 6.1098 -0.5390 2.0843 36 1 5.9630 -2.1003 1.2423 37 1 7.5012 -5.3513 6.2489 38 1 7.1494 -7.2566 4.7445 39 1 5.8067 -4.6338 1.6576 40 1 0.7897 -2.1448 -2.0760 41 1 2.5007 -2.6047 -1.9047 42 1 1.4400 -2.5734 -0.4756 43 1 4.8388 -0.7609 -4.4895 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675015363.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:36 Heat of formation + Delta-G solvation = -4.596572 kcal Electronic energy + Delta-G solvation = -29028.813466 eV Core-core repulsion = 24798.700105 eV Total energy + Delta-G solvation = -4230.113361 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.02362 -43.02456 -40.85910 -38.65683 -38.58704 -35.83685 -35.41211 -34.00206 -32.13743 -31.85453 -31.02157 -30.53337 -28.04868 -26.95905 -25.09261 -24.78805 -23.89828 -22.48743 -21.37847 -20.77674 -19.40573 -18.92810 -18.59411 -18.28106 -17.75287 -17.49027 -17.16939 -17.00303 -16.88134 -16.54305 -16.18805 -15.74885 -15.36358 -15.28127 -14.75360 -14.64848 -14.52700 -14.38056 -14.18848 -14.11205 -13.93056 -13.69443 -13.56690 -13.20243 -13.03766 -12.75174 -12.70137 -12.49276 -12.39291 -12.27718 -12.21627 -12.01286 -11.68167 -11.40869 -11.09310 -10.57146 -10.24748 -10.01889 -9.64491 -8.86682 -8.16533 -5.47058 -0.68892 -0.13467 0.70025 1.23880 1.37653 1.41244 1.48079 1.57366 2.12233 2.30334 2.47652 2.69155 2.86923 3.03033 3.14689 3.32675 3.36769 3.63544 3.82177 3.86201 4.00621 4.07046 4.07465 4.20182 4.31951 4.43233 4.52486 4.55683 4.69075 4.72307 4.77290 4.79284 4.82904 4.86060 4.89508 5.02692 5.04550 5.27182 5.36670 5.43172 5.52152 5.93652 5.96028 6.21742 6.48117 6.96509 7.10462 7.66551 8.07565 9.02933 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012921 B = 0.003685 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.451023 B = 7597.264143 C = 8465.610420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.158 3.842 3 H 0.075 0.925 4 C 0.109 3.891 5 N -0.703 5.703 6 C 0.519 3.481 7 O -0.579 6.579 8 C -0.084 4.084 9 C 0.158 3.842 10 N -0.297 5.297 11 O -0.099 6.099 12 C 0.058 3.942 13 C -0.084 4.084 14 C -0.077 4.077 15 C 0.066 3.934 16 F -0.136 7.136 17 C -0.088 4.088 18 C -0.178 4.178 19 N -0.609 5.609 20 C 0.113 3.887 21 C -0.259 4.259 22 H 0.048 0.952 23 C -0.017 4.017 24 N -0.944 5.944 25 Si 0.934 3.066 26 H -0.299 1.299 27 H -0.313 1.313 28 H -0.226 1.226 29 H 0.077 0.923 30 H 0.049 0.951 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.413 0.587 35 H 0.149 0.851 36 H 0.143 0.857 37 H 0.186 0.814 38 H 0.193 0.807 39 H 0.147 0.853 40 H 0.017 0.983 41 H 0.022 0.978 42 H 0.059 0.941 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.973 -10.408 16.863 20.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.051 3.949 3 H 0.093 0.907 4 C -0.016 4.016 5 N -0.354 5.354 6 C 0.304 3.696 7 O -0.460 6.460 8 C -0.124 4.124 9 C -0.023 4.023 10 N -0.040 5.040 11 O -0.110 6.110 12 C 0.004 3.996 13 C -0.104 4.104 14 C -0.096 4.096 15 C 0.047 3.953 16 F -0.115 7.115 17 C -0.109 4.109 18 C -0.182 4.182 19 N -0.333 5.333 20 C -0.032 4.032 21 C -0.388 4.388 22 H 0.065 0.935 23 C -0.214 4.214 24 N -0.588 5.588 25 Si 0.764 3.236 26 H -0.228 1.228 27 H -0.243 1.243 28 H -0.149 1.149 29 H 0.096 0.904 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.251 0.749 35 H 0.167 0.833 36 H 0.160 0.840 37 H 0.203 0.797 38 H 0.211 0.789 39 H 0.165 0.835 40 H 0.035 0.965 41 H 0.040 0.960 42 H 0.078 0.922 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.782 -9.633 18.150 21.097 hybrid contribution 0.426 -1.034 -1.533 1.897 sum 5.207 -10.667 16.617 20.421 Atomic orbital electron populations 1.22051 0.94754 1.02034 1.02006 1.20895 0.94353 0.95866 0.83767 0.90703 1.21945 0.79270 1.01084 0.99306 1.46046 1.08724 1.57810 1.22834 1.20246 0.89298 0.77851 0.82234 1.90700 1.70892 1.49731 1.34645 1.20474 0.92824 1.05132 0.93967 1.23955 0.92165 0.91692 0.94504 1.79824 1.16588 1.07725 0.99825 1.89117 1.75106 1.12190 1.34566 1.20771 0.97807 0.89400 0.91632 1.20302 1.02139 0.84952 1.02957 1.21512 0.96104 1.01876 0.90128 1.17503 1.04521 0.82901 0.90378 1.91535 1.93294 1.54563 1.72115 1.20721 0.99116 0.90056 1.00958 1.20451 1.09279 0.92483 0.95950 1.44162 1.57843 1.09188 1.22134 1.21286 0.97533 0.85381 0.98963 1.18675 1.10891 0.94114 1.15108 0.93453 1.25909 0.98390 1.01123 0.95980 1.70076 1.33062 1.43927 1.11689 0.86128 0.75807 0.79718 0.81900 1.22799 1.24252 1.14933 0.90418 0.93205 0.92690 0.92412 0.90673 0.74890 0.83340 0.83966 0.79673 0.78948 0.83517 0.96470 0.96006 0.92225 0.93037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.08 9.20 71.98 0.66 -3.42 16 2 C 0.16 5.09 2.87 44.99 0.13 5.22 16 3 H 0.07 2.49 7.89 -2.39 -0.02 2.47 16 4 C 0.11 3.31 4.93 86.38 0.43 3.73 16 5 N -0.70 -21.97 4.54 -463.07 -2.10 -24.07 16 6 C 0.52 16.33 7.82 87.66 0.69 17.01 16 7 O -0.58 -21.97 16.03 -3.01 -0.05 -22.02 16 8 C -0.08 -2.13 6.30 29.10 0.18 -1.94 16 9 C 0.16 4.52 5.95 45.04 0.27 4.79 16 10 N -0.30 -9.27 12.81 -43.47 -0.56 -9.82 16 11 O -0.10 -2.86 12.07 29.09 0.35 -2.51 16 12 C 0.06 1.39 7.48 22.97 0.17 1.56 16 13 C -0.08 -1.27 10.06 22.33 0.22 -1.05 16 14 C -0.08 -1.03 9.99 22.34 0.22 -0.80 16 15 C 0.07 1.30 7.29 22.35 0.16 1.47 16 16 F -0.14 -2.85 17.26 44.97 0.78 -2.07 16 17 C -0.09 -2.05 10.08 22.52 0.23 -1.82 16 18 C -0.18 -4.69 6.32 -20.22 -0.13 -4.82 16 19 N -0.61 -24.51 1.93 -702.78 -1.35 -25.87 16 20 C 0.11 4.34 8.77 127.77 1.12 5.46 16 21 C -0.26 -12.85 9.56 84.03 0.80 -12.04 16 22 H 0.05 2.63 8.06 -2.91 -0.02 2.61 16 23 C -0.02 -0.89 5.27 84.86 0.45 -0.44 16 24 N -0.94 -54.85 13.97 21.65 0.30 -54.55 16 25 Si 0.93 40.07 24.74 68.60 1.70 41.77 16 26 H -0.30 -13.33 6.62 99.48 0.66 -12.67 16 27 H -0.31 -13.90 7.11 99.48 0.71 -13.19 16 28 H -0.23 -8.11 5.40 99.48 0.54 -7.57 16 29 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.05 1.46 7.67 -2.39 -0.02 1.44 16 32 H 0.06 1.81 6.86 -2.39 -0.02 1.79 16 33 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.41 13.37 6.71 -92.71 -0.62 12.75 16 35 H 0.15 3.04 8.14 -2.39 -0.02 3.02 16 36 H 0.14 3.08 8.10 -2.39 -0.02 3.06 16 37 H 0.19 1.44 8.06 -2.91 -0.02 1.41 16 38 H 0.19 1.04 8.06 -2.91 -0.02 1.01 16 39 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 40 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.02 0.92 2.74 -2.39 -0.01 0.91 16 42 H 0.06 1.98 6.54 -2.38 -0.02 1.97 16 43 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -69.26 362.13 4.90 -64.36 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: 0.22 Total: 21.88 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: 5.61 Total: 12.91 kcal Atomic # 7 Polarization: -110.60 SS G_CDS: -3.71 Total: -114.32 kcal Atomic # 8 Polarization: -24.84 SS G_CDS: 0.30 Total: -24.53 kcal Atomic # 9 Polarization: -2.85 SS G_CDS: 0.78 Total: -2.07 kcal Atomic # 14 Polarization: 40.07 SS G_CDS: 1.70 Total: 41.77 kcal Total: -69.26 4.90 -64.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675015363.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.768 kcal (2) G-P(sol) polarization free energy of solvation -69.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds