Wall clock time and date at job start Tue Mar 31 2020 18:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36937 * 120.00023 * 2 1 4 4 H 1.07996 * 119.99740 * 202.33987 * 3 2 1 5 5 C 1.38814 * 120.00144 * 22.34404 * 3 2 1 6 6 N 1.31617 * 119.99759 * 11.35200 * 5 3 2 7 7 Si 1.86795 * 120.00204 * 191.35494 * 5 3 2 8 8 H 1.48498 * 109.47239 * 359.97438 * 7 5 3 9 9 H 1.48496 * 109.47220 * 119.99595 * 7 5 3 10 10 H 1.48502 * 109.46963 * 240.00140 * 7 5 3 11 11 C 1.46498 * 119.99850 * 179.97438 * 2 1 3 12 12 C 1.53003 * 109.47183 * 270.00081 * 11 2 1 13 13 C 1.52999 * 109.46878 * 179.97438 * 12 11 2 14 14 N 1.46505 * 109.46696 * 179.97438 * 13 12 11 15 15 C 1.34783 * 119.99689 * 179.97438 * 14 13 12 16 16 O 1.21279 * 119.99666 * 0.02562 * 15 14 13 17 17 C 1.50699 * 119.99492 * 180.02562 * 15 14 13 18 18 C 1.50709 * 109.46644 * 180.02562 * 17 15 14 19 19 N 1.29739 * 126.28912 * 269.95842 * 18 17 15 20 20 O 1.41348 * 109.73577 * 180.02562 * 19 18 17 21 21 C 1.34905 * 109.32915 * 0.02562 * 20 19 18 22 22 C 1.38955 * 133.32988 * 179.97438 * 21 20 19 23 23 C 1.37761 * 119.96586 * 180.02562 * 22 21 20 24 24 C 1.38997 * 120.58211 * 359.97438 * 23 22 21 25 25 F 1.35104 * 119.83905 * 180.02562 * 24 23 22 26 26 C 1.37799 * 120.31827 * 359.97438 * 24 23 22 27 27 C 1.39714 * 119.65844 * 0.02562 * 26 24 23 28 28 H 1.09000 * 109.47534 * 274.21002 * 1 2 3 29 29 H 1.09006 * 109.47246 * 34.20717 * 1 2 3 30 30 H 1.08994 * 109.47442 * 154.20923 * 1 2 3 31 31 H 0.97008 * 120.00193 * 179.97438 * 6 5 3 32 32 H 1.09001 * 109.46862 * 150.00067 * 11 2 1 33 33 H 1.08998 * 109.47013 * 30.00291 * 11 2 1 34 34 H 1.09001 * 109.47233 * 60.00214 * 12 11 2 35 35 H 1.08998 * 109.47318 * 300.00023 * 12 11 2 36 36 H 1.08997 * 109.46975 * 60.00648 * 13 12 11 37 37 H 1.08992 * 109.47363 * 299.99723 * 13 12 11 38 38 H 0.96992 * 120.00246 * 0.02562 * 14 13 12 39 39 H 1.09001 * 109.47437 * 60.00415 * 17 15 14 40 40 H 1.08998 * 109.47492 * 299.99992 * 17 15 14 41 41 H 1.07995 * 120.01595 * 359.74040 * 22 21 20 42 42 H 1.07997 * 119.70510 * 179.97438 * 23 22 21 43 43 H 1.07998 * 120.16896 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1689 1.2210 -0.3555 5 6 1.5338 2.3430 0.4570 6 7 0.3842 2.2691 1.0936 7 14 2.3365 4.0048 0.1685 8 1 3.6142 3.8168 -0.5646 9 1 1.4267 4.8614 -0.6336 10 1 2.6073 4.6572 1.4747 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7098 1.4433 13 6 3.2169 -3.0351 1.4438 14 7 3.4615 -3.4571 2.8253 15 6 4.1233 -4.6051 3.0720 16 8 4.5165 -5.2884 2.1504 17 6 4.3744 -5.0394 4.4930 18 6 5.1275 -6.3449 4.4936 19 7 4.6053 -7.5326 4.4950 20 8 5.6312 -8.5050 4.4956 21 6 6.8310 -7.8883 4.4951 22 6 8.1411 -8.3513 4.4959 23 6 9.1876 -7.4554 4.4956 24 6 8.9466 -6.0865 4.4940 25 9 9.9842 -5.2213 4.4932 26 6 7.6545 -5.6077 4.4922 27 6 6.5843 -6.5059 4.4925 28 1 -0.3634 0.0754 1.0249 29 1 -0.3634 0.8499 -0.5778 30 1 -0.3634 -0.9252 -0.4471 31 1 -0.0460 3.0776 1.4134 32 1 3.1499 -1.1386 -0.5133 33 1 1.6084 -2.0285 -0.5130 34 1 1.5000 -1.8399 1.9572 35 1 3.0415 -0.9500 1.9568 36 1 4.1693 -2.9054 0.9299 37 1 2.6274 -3.7948 0.9305 38 1 3.1467 -2.9108 3.5622 39 1 3.4220 -5.1688 5.0072 40 1 4.9642 -4.2800 5.0063 41 1 8.3388 -9.4130 4.5013 42 1 10.2042 -7.8200 4.4965 43 1 7.4700 -4.5436 4.4906 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689861973.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:19 Heat of formation + Delta-G solvation = 2.500127 kcal Electronic energy + Delta-G solvation = -27190.637376 eV Core-core repulsion = 22960.831751 eV Total energy + Delta-G solvation = -4229.805625 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.31139 -42.23354 -39.78755 -37.91619 -36.36191 -35.08299 -34.73380 -32.16962 -31.28193 -30.59546 -30.10755 -29.25789 -25.98337 -25.29038 -24.12430 -23.17535 -22.29956 -21.41484 -20.64067 -19.92612 -18.67489 -17.82862 -17.37120 -17.05978 -16.79264 -16.34823 -15.97231 -15.91924 -15.77469 -15.31971 -14.84445 -14.72349 -14.41276 -14.03027 -13.91195 -13.66105 -13.43963 -13.30704 -13.11001 -12.76615 -12.57136 -12.32915 -11.97484 -11.69850 -11.59691 -11.52425 -11.36032 -11.11864 -10.88027 -10.77993 -10.50883 -10.15326 -10.07483 -9.90990 -9.80011 -9.55389 -9.08774 -8.91887 -8.58946 -6.80624 -5.76263 -3.22117 0.02295 0.57316 1.48744 2.01447 2.41545 2.84199 3.09438 3.34542 3.42189 3.43856 3.44502 3.59410 3.85693 3.97927 4.35566 4.43948 4.46838 4.62381 4.71348 4.73470 4.87817 5.12694 5.21277 5.28220 5.40441 5.41691 5.45589 5.46162 5.53643 5.78535 5.88217 6.07159 6.08232 6.13755 6.39135 6.48472 6.73226 6.75869 6.77460 6.95491 7.35659 7.38572 7.69915 7.78193 8.04072 8.36678 9.20648 9.83906 10.32613 11.28837 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016881 B = 0.001993 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.230229 B =14045.703734 C =15192.035126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.603 5.603 3 C -0.253 4.253 4 H 0.069 0.931 5 C 0.000 4.000 6 N -0.909 5.909 7 Si 0.904 3.096 8 H -0.278 1.278 9 H -0.289 1.289 10 H -0.291 1.291 11 C 0.156 3.844 12 C -0.150 4.150 13 C 0.120 3.880 14 N -0.720 5.720 15 C 0.515 3.485 16 O -0.534 6.534 17 C -0.080 4.080 18 C 0.158 3.842 19 N -0.266 5.266 20 O -0.085 6.085 21 C 0.076 3.924 22 C -0.095 4.095 23 C -0.094 4.094 24 C 0.072 3.928 25 F -0.132 7.132 26 C -0.072 4.072 27 C -0.157 4.157 28 H 0.027 0.973 29 H 0.045 0.955 30 H -0.003 1.003 31 H 0.252 0.748 32 H 0.046 0.954 33 H 0.039 0.961 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.404 0.596 39 H 0.126 0.874 40 H 0.127 0.873 41 H 0.151 0.849 42 H 0.154 0.846 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.249 -19.081 11.316 26.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.325 5.325 3 C -0.382 4.382 4 H 0.087 0.913 5 C -0.198 4.198 6 N -0.555 5.555 7 Si 0.735 3.265 8 H -0.203 1.203 9 H -0.216 1.216 10 H -0.218 1.218 11 C 0.028 3.972 12 C -0.191 4.191 13 C -0.004 4.004 14 N -0.371 5.371 15 C 0.298 3.702 16 O -0.410 6.410 17 C -0.120 4.120 18 C -0.024 4.024 19 N -0.008 5.008 20 O -0.096 6.096 21 C 0.022 3.978 22 C -0.114 4.114 23 C -0.114 4.114 24 C 0.052 3.948 25 F -0.111 7.111 26 C -0.093 4.093 27 C -0.161 4.161 28 H 0.046 0.954 29 H 0.063 0.937 30 H 0.015 0.985 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.238 0.762 39 H 0.144 0.856 40 H 0.145 0.855 41 H 0.169 0.831 42 H 0.171 0.829 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 13.339 -20.216 10.667 26.465 hybrid contribution 0.957 1.893 0.395 2.158 sum 14.296 -18.323 11.061 25.738 Atomic orbital electron populations 1.20804 0.82477 0.95626 0.99233 1.43995 1.01985 1.00702 1.85839 1.19270 0.97961 0.85413 1.35588 0.91315 1.25041 0.97716 0.98564 0.98517 1.70077 1.17878 1.26952 1.40545 0.86181 0.78683 0.84257 0.77417 1.20318 1.21616 1.21754 1.20718 0.96023 0.88280 0.92217 1.22568 0.99625 0.93815 1.03091 1.21573 1.00492 0.97297 0.81028 1.46103 1.57381 1.23171 1.10444 1.20011 0.78700 0.81572 0.89898 1.90771 1.50719 1.53627 1.45922 1.20322 1.02677 0.91443 0.97600 1.23706 0.91017 0.94843 0.92860 1.79910 1.05636 0.97288 1.17938 1.89202 1.10724 1.28516 1.81142 1.20258 0.89042 0.91152 0.97319 1.19837 0.86493 1.01251 1.03833 1.21104 1.00518 0.90831 0.98971 1.17279 0.83858 0.87404 1.06212 1.91548 1.56317 1.69051 1.94165 1.20586 0.89546 1.00846 0.98297 1.20324 0.92284 0.93123 1.10372 0.95426 0.93672 0.98489 0.93820 0.93605 0.94251 0.92075 0.91199 0.91584 0.91750 0.76183 0.85576 0.85488 0.83146 0.82880 0.83443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.95 9.01 59.85 0.54 4.49 16 2 N -0.60 -14.76 2.93 -181.12 -0.53 -15.29 16 3 C -0.25 -6.77 9.67 -15.06 -0.15 -6.92 16 4 H 0.07 1.81 7.84 -52.49 -0.41 1.40 16 5 C 0.00 -0.01 5.13 -17.43 -0.09 -0.10 16 6 N -0.91 -25.92 10.59 55.49 0.59 -25.33 16 7 Si 0.90 21.44 29.57 -169.99 -5.03 16.42 16 8 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 9 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 11 C 0.16 3.03 5.71 -4.04 -0.02 3.01 16 12 C -0.15 -2.47 5.65 -26.73 -0.15 -2.62 16 13 C 0.12 1.66 5.67 -4.04 -0.02 1.64 16 14 N -0.72 -8.14 5.56 -60.29 -0.33 -8.48 16 15 C 0.51 6.19 7.82 -10.98 -0.09 6.10 16 16 O -0.53 -8.83 16.03 5.56 0.09 -8.74 16 17 C -0.08 -0.64 6.30 -29.03 -0.18 -0.83 16 18 C 0.16 1.74 5.96 -80.11 -0.48 1.27 16 19 N -0.27 -3.47 12.81 34.91 0.45 -3.03 16 20 O -0.08 -1.07 12.07 7.45 0.09 -0.98 16 21 C 0.08 0.80 7.48 -38.50 -0.29 0.51 16 22 C -0.09 -0.68 10.06 -39.49 -0.40 -1.08 16 23 C -0.09 -0.61 9.99 -39.47 -0.39 -1.01 16 24 C 0.07 0.60 7.29 -39.46 -0.29 0.31 16 25 F -0.13 -1.19 17.26 2.25 0.04 -1.15 16 26 C -0.07 -0.64 10.08 -39.19 -0.39 -1.03 16 27 C -0.16 -1.65 6.32 -105.16 -0.66 -2.31 16 28 H 0.03 0.71 7.42 -51.93 -0.39 0.33 16 29 H 0.04 1.18 7.19 -51.93 -0.37 0.81 16 30 H 0.00 -0.07 7.84 -51.93 -0.41 -0.48 16 31 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 32 H 0.05 0.87 8.03 -51.93 -0.42 0.46 16 33 H 0.04 0.71 7.86 -51.93 -0.41 0.30 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.40 3.54 8.47 -40.82 -0.35 3.19 16 39 H 0.13 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.13 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.15 0.67 8.06 -52.49 -0.42 0.24 16 42 H 0.15 0.55 8.06 -52.49 -0.42 0.13 16 43 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 376.27 15.07 5.67 5.67 Total: -1.00 -34.26 376.27 -7.72 -41.98 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -5.69 Total: -2.49 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: -3.07 Total: 1.43 kcal Atomic # 7 Polarization: -52.30 SS G_CDS: 0.17 Total: -52.13 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.18 Total: -9.72 kcal Atomic # 9 Polarization: -1.19 SS G_CDS: 0.04 Total: -1.15 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.26 -7.72 -41.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689861973.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.483 kcal (2) G-P(sol) polarization free energy of solvation -34.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds