Wall clock time and date at job start Tue Mar 31 2020 18:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36937 * 120.00023 * 2 1 4 4 H 1.07996 * 119.99740 * 202.33987 * 3 2 1 5 5 C 1.38814 * 120.00144 * 22.34404 * 3 2 1 6 6 N 1.31617 * 119.99759 * 11.35200 * 5 3 2 7 7 Si 1.86795 * 120.00204 * 191.35494 * 5 3 2 8 8 H 1.48498 * 109.47239 * 359.97438 * 7 5 3 9 9 H 1.48496 * 109.47220 * 119.99595 * 7 5 3 10 10 H 1.48502 * 109.46963 * 240.00140 * 7 5 3 11 11 C 1.46498 * 119.99850 * 179.97438 * 2 1 3 12 12 C 1.53003 * 109.47183 * 270.00081 * 11 2 1 13 13 C 1.52999 * 109.46878 * 179.97438 * 12 11 2 14 14 N 1.46505 * 109.46696 * 179.97438 * 13 12 11 15 15 C 1.34783 * 119.99689 * 179.97438 * 14 13 12 16 16 O 1.21279 * 119.99666 * 0.02562 * 15 14 13 17 17 C 1.50699 * 119.99492 * 180.02562 * 15 14 13 18 18 C 1.50709 * 109.46644 * 180.02562 * 17 15 14 19 19 N 1.29739 * 126.28912 * 269.95842 * 18 17 15 20 20 O 1.41348 * 109.73577 * 180.02562 * 19 18 17 21 21 C 1.34905 * 109.32915 * 0.02562 * 20 19 18 22 22 C 1.38955 * 133.32988 * 179.97438 * 21 20 19 23 23 C 1.37761 * 119.96586 * 180.02562 * 22 21 20 24 24 C 1.38997 * 120.58211 * 359.97438 * 23 22 21 25 25 F 1.35104 * 119.83905 * 180.02562 * 24 23 22 26 26 C 1.37799 * 120.31827 * 359.97438 * 24 23 22 27 27 C 1.39714 * 119.65844 * 0.02562 * 26 24 23 28 28 H 1.09000 * 109.47534 * 274.21002 * 1 2 3 29 29 H 1.09006 * 109.47246 * 34.20717 * 1 2 3 30 30 H 1.08994 * 109.47442 * 154.20923 * 1 2 3 31 31 H 0.97008 * 120.00193 * 179.97438 * 6 5 3 32 32 H 1.09001 * 109.46862 * 150.00067 * 11 2 1 33 33 H 1.08998 * 109.47013 * 30.00291 * 11 2 1 34 34 H 1.09001 * 109.47233 * 60.00214 * 12 11 2 35 35 H 1.08998 * 109.47318 * 300.00023 * 12 11 2 36 36 H 1.08997 * 109.46975 * 60.00648 * 13 12 11 37 37 H 1.08992 * 109.47363 * 299.99723 * 13 12 11 38 38 H 0.96992 * 120.00246 * 0.02562 * 14 13 12 39 39 H 1.09001 * 109.47437 * 60.00415 * 17 15 14 40 40 H 1.08998 * 109.47492 * 299.99992 * 17 15 14 41 41 H 1.07995 * 120.01595 * 359.74040 * 22 21 20 42 42 H 1.07997 * 119.70510 * 179.97438 * 23 22 21 43 43 H 1.07998 * 120.16896 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1689 1.2210 -0.3555 5 6 1.5338 2.3430 0.4570 6 7 0.3842 2.2691 1.0936 7 14 2.3365 4.0048 0.1685 8 1 3.6142 3.8168 -0.5646 9 1 1.4267 4.8614 -0.6336 10 1 2.6073 4.6572 1.4747 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7098 1.4433 13 6 3.2169 -3.0351 1.4438 14 7 3.4615 -3.4571 2.8253 15 6 4.1233 -4.6051 3.0720 16 8 4.5165 -5.2884 2.1504 17 6 4.3744 -5.0394 4.4930 18 6 5.1275 -6.3449 4.4936 19 7 4.6053 -7.5326 4.4950 20 8 5.6312 -8.5050 4.4956 21 6 6.8310 -7.8883 4.4951 22 6 8.1411 -8.3513 4.4959 23 6 9.1876 -7.4554 4.4956 24 6 8.9466 -6.0865 4.4940 25 9 9.9842 -5.2213 4.4932 26 6 7.6545 -5.6077 4.4922 27 6 6.5843 -6.5059 4.4925 28 1 -0.3634 0.0754 1.0249 29 1 -0.3634 0.8499 -0.5778 30 1 -0.3634 -0.9252 -0.4471 31 1 -0.0460 3.0776 1.4134 32 1 3.1499 -1.1386 -0.5133 33 1 1.6084 -2.0285 -0.5130 34 1 1.5000 -1.8399 1.9572 35 1 3.0415 -0.9500 1.9568 36 1 4.1693 -2.9054 0.9299 37 1 2.6274 -3.7948 0.9305 38 1 3.1467 -2.9108 3.5622 39 1 3.4220 -5.1688 5.0072 40 1 4.9642 -4.2800 5.0063 41 1 8.3388 -9.4130 4.5013 42 1 10.2042 -7.8200 4.4965 43 1 7.4700 -4.5436 4.4906 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689861973.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:18 Heat of formation + Delta-G solvation = -19.573074 kcal Electronic energy + Delta-G solvation = -27191.594542 eV Core-core repulsion = 22960.831751 eV Total energy + Delta-G solvation = -4230.762791 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.97189 -42.97712 -40.79315 -38.57030 -37.97386 -36.29794 -35.70119 -33.79691 -32.15109 -31.77401 -30.88716 -30.28752 -27.93789 -26.82626 -24.78080 -23.85858 -23.78147 -22.39985 -22.07443 -20.98589 -19.36063 -18.76182 -18.55225 -18.26082 -17.70887 -17.16128 -17.08287 -16.92146 -16.56146 -16.48413 -16.18152 -15.71845 -15.45597 -15.26106 -14.90524 -14.67753 -14.59007 -14.55856 -14.27876 -14.00707 -13.52132 -13.23814 -12.99552 -12.98496 -12.79226 -12.72271 -12.66639 -12.45087 -12.38080 -12.26493 -12.20986 -11.99255 -11.85065 -11.44905 -11.10886 -10.63725 -10.21137 -10.14535 -9.59796 -8.78826 -7.81580 -5.29288 -0.63841 -0.08984 0.74923 1.27213 1.46851 1.49088 1.49238 1.58718 2.09796 2.31504 2.52459 2.73233 2.92229 3.20127 3.33055 3.38070 3.64015 3.67947 3.86760 3.91156 4.11573 4.13616 4.19433 4.28589 4.31772 4.49674 4.52358 4.66823 4.73718 4.81396 4.82830 4.87162 4.89172 4.92352 4.94211 5.32009 5.32361 5.38238 5.47879 5.50057 5.66423 5.74884 6.00361 6.35051 6.46389 7.13037 7.17193 7.89250 8.32548 9.22137 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016881 B = 0.001993 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.230229 B =14045.703734 C =15192.035126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.621 5.621 3 C -0.258 4.258 4 H 0.071 0.929 5 C -0.054 4.054 6 N -0.939 5.939 7 Si 0.966 3.034 8 H -0.267 1.267 9 H -0.294 1.294 10 H -0.291 1.291 11 C 0.149 3.851 12 C -0.129 4.129 13 C 0.133 3.867 14 N -0.711 5.711 15 C 0.517 3.483 16 O -0.582 6.582 17 C -0.073 4.073 18 C 0.158 3.842 19 N -0.303 5.303 20 O -0.106 6.106 21 C 0.053 3.947 22 C -0.091 4.091 23 C -0.080 4.080 24 C 0.063 3.937 25 F -0.136 7.136 26 C -0.078 4.078 27 C -0.177 4.177 28 H 0.006 0.994 29 H 0.015 0.985 30 H 0.028 0.972 31 H 0.247 0.753 32 H 0.049 0.951 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.418 0.582 39 H 0.152 0.848 40 H 0.168 0.832 41 H 0.179 0.821 42 H 0.188 0.812 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.131 -19.509 12.035 28.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.344 5.344 3 C -0.388 4.388 4 H 0.089 0.911 5 C -0.249 4.249 6 N -0.586 5.586 7 Si 0.795 3.205 8 H -0.192 1.192 9 H -0.221 1.221 10 H -0.218 1.218 11 C 0.022 3.978 12 C -0.169 4.169 13 C 0.009 3.991 14 N -0.363 5.363 15 C 0.303 3.697 16 O -0.463 6.463 17 C -0.113 4.113 18 C -0.024 4.024 19 N -0.046 5.046 20 O -0.117 6.117 21 C 0.000 4.000 22 C -0.110 4.110 23 C -0.100 4.100 24 C 0.044 3.956 25 F -0.115 7.115 26 C -0.098 4.098 27 C -0.180 4.180 28 H 0.024 0.976 29 H 0.034 0.966 30 H 0.047 0.953 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.256 0.744 39 H 0.170 0.830 40 H 0.185 0.815 41 H 0.196 0.804 42 H 0.205 0.795 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 15.245 -20.661 11.409 28.097 hybrid contribution 0.460 1.958 0.130 2.016 sum 15.705 -18.703 11.539 27.010 Atomic orbital electron populations 1.20557 0.82765 0.95884 0.97658 1.44223 1.02202 1.01820 1.86145 1.19561 0.98046 0.86584 1.34632 0.91142 1.25762 0.98476 1.01722 0.98966 1.70230 1.19189 1.27304 1.41850 0.85210 0.78030 0.80218 0.77039 1.19186 1.22094 1.21804 1.20901 0.95938 0.86756 0.94176 1.22185 0.99483 0.94647 1.00598 1.21222 0.99725 0.95650 0.82551 1.45920 1.57130 1.23349 1.09875 1.20551 0.77442 0.80746 0.90997 1.90758 1.52683 1.55007 1.47805 1.20487 1.04533 0.91069 0.95213 1.24162 0.91683 0.95178 0.91361 1.79836 1.06632 0.98172 1.19971 1.89130 1.11582 1.29071 1.81888 1.20786 0.89474 0.91501 0.98283 1.20249 0.85181 1.02929 1.02660 1.21488 1.01909 0.89866 0.96718 1.17504 0.83606 0.88177 1.06317 1.91541 1.56391 1.69349 1.94219 1.20756 0.89457 1.01477 0.98138 1.20479 0.92445 0.93549 1.11563 0.97583 0.96572 0.95319 0.94352 0.93309 0.92491 0.92503 0.92630 0.92044 0.92008 0.74441 0.82984 0.81486 0.80370 0.79510 0.82029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.54 9.01 127.77 1.15 9.69 16 2 N -0.62 -30.12 2.93 -726.93 -2.13 -32.25 16 3 C -0.26 -13.75 9.67 84.03 0.81 -12.94 16 4 H 0.07 3.66 7.84 -2.91 -0.02 3.63 16 5 C -0.05 -2.98 5.13 84.86 0.44 -2.55 16 6 N -0.94 -54.22 10.59 21.65 0.23 -53.99 16 7 Si 0.97 44.12 29.57 68.60 2.03 46.15 16 8 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 9 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 10 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 11 C 0.15 5.60 5.71 86.38 0.49 6.09 16 12 C -0.13 -4.08 5.65 30.60 0.17 -3.91 16 13 C 0.13 3.51 5.67 86.38 0.49 4.00 16 14 N -0.71 -14.76 5.56 -463.06 -2.57 -17.33 16 15 C 0.52 11.65 7.82 87.66 0.69 12.34 16 16 O -0.58 -19.04 16.03 -3.02 -0.05 -19.08 16 17 C -0.07 -1.02 6.30 29.10 0.18 -0.84 16 18 C 0.16 3.37 5.96 45.05 0.27 3.64 16 19 N -0.30 -8.00 12.81 -43.46 -0.56 -8.55 16 20 O -0.11 -2.74 12.07 29.03 0.35 -2.39 16 21 C 0.05 1.09 7.48 22.97 0.17 1.26 16 22 C -0.09 -1.14 10.06 22.33 0.22 -0.92 16 23 C -0.08 -0.83 9.99 22.34 0.22 -0.61 16 24 C 0.06 0.93 7.29 22.35 0.16 1.10 16 25 F -0.14 -2.19 17.26 44.97 0.78 -1.42 16 26 C -0.08 -1.26 10.08 22.52 0.23 -1.03 16 27 C -0.18 -3.57 6.32 -20.22 -0.13 -3.70 16 28 H 0.01 0.31 7.42 -2.39 -0.02 0.29 16 29 H 0.02 0.84 7.19 -2.38 -0.02 0.82 16 30 H 0.03 1.17 7.84 -2.39 -0.02 1.15 16 31 H 0.25 13.89 8.31 -92.70 -0.77 13.12 16 32 H 0.05 1.80 8.03 -2.39 -0.02 1.78 16 33 H 0.06 1.94 7.86 -2.39 -0.02 1.92 16 34 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.42 6.32 8.47 -92.71 -0.79 5.53 16 39 H 0.15 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.17 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.18 1.13 8.06 -2.91 -0.02 1.10 16 42 H 0.19 0.62 8.06 -2.91 -0.02 0.60 16 43 H 0.16 1.99 8.06 -2.91 -0.02 1.96 16 Total: -1.00 -76.04 376.27 3.92 -72.12 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: 0.26 Total: 5.11 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: 5.57 Total: 11.63 kcal Atomic # 7 Polarization: -107.09 SS G_CDS: -5.03 Total: -112.12 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: 0.30 Total: -21.48 kcal Atomic # 9 Polarization: -2.19 SS G_CDS: 0.78 Total: -1.42 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -76.04 3.92 -72.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689861973.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.552 kcal (2) G-P(sol) polarization free energy of solvation -76.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds