Wall clock time and date at job start Tue Mar 31 2020 18:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.35089 * 125.91378 * 2 1 4 4 C 1.35005 * 108.03314 * 180.02562 * 3 2 1 5 5 C 1.41046 * 107.84748 * 359.97438 * 4 3 2 6 6 C 1.47849 * 126.06853 * 180.02562 * 5 4 3 7 7 C 1.36738 * 126.81733 * 180.30230 * 6 5 4 8 8 C 1.41886 * 103.81625 * 180.13623 * 7 6 5 9 9 C 1.48352 * 126.84310 * 179.89113 * 8 7 6 10 10 O 1.21498 * 119.99689 * 359.70573 * 9 8 7 11 11 N 1.34767 * 120.00143 * 179.70778 * 9 8 7 12 12 C 1.46500 * 120.00203 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47473 * 179.97438 * 12 11 9 14 14 H 1.09001 * 109.47289 * 60.00327 * 13 12 11 15 15 O 1.42905 * 109.47264 * 300.00160 * 13 12 11 16 16 C 1.52997 * 109.47232 * 180.02562 * 13 12 11 17 17 N 1.46505 * 109.47119 * 185.00149 * 16 13 12 18 18 C 1.36939 * 120.00179 * 179.97438 * 17 16 13 19 19 H 1.08002 * 119.99755 * 0.02562 * 18 17 16 20 20 C 1.38809 * 119.99895 * 179.97438 * 18 17 16 21 21 N 1.31628 * 119.99663 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 120.00353 * 0.02562 * 20 18 17 23 23 H 1.48506 * 109.46957 * 89.99940 * 22 20 18 24 24 H 1.48502 * 109.47127 * 209.99941 * 22 20 18 25 25 H 1.48498 * 109.46889 * 330.00053 * 22 20 18 26 26 N 1.31096 * 106.31565 * 359.62665 * 8 7 6 27 27 O 1.20869 * 111.76767 * 0.24265 * 26 8 7 28 28 N 1.31823 * 107.86534 * 0.26056 * 5 4 3 29 29 H 1.09001 * 109.46722 * 89.99784 * 1 2 3 30 30 H 1.09000 * 109.47162 * 210.00231 * 1 2 3 31 31 H 1.09003 * 109.46807 * 330.00406 * 1 2 3 32 32 H 1.07996 * 125.98354 * 0.02562 * 3 2 1 33 33 H 1.07997 * 126.07998 * 180.02562 * 4 3 2 34 34 H 1.07997 * 128.09194 * 0.02562 * 7 6 5 35 35 H 0.97004 * 120.00402 * 359.97438 * 11 9 8 36 36 H 1.09001 * 109.47049 * 60.00181 * 12 11 9 37 37 H 1.09002 * 109.47129 * 300.00254 * 12 11 9 38 38 H 0.96696 * 114.00036 * 299.99911 * 15 13 12 39 39 H 1.09000 * 109.47278 * 304.99661 * 16 13 12 40 40 H 1.08994 * 109.47510 * 65.00170 * 16 13 12 41 41 H 0.97002 * 120.00209 * 359.97438 * 17 16 13 42 42 H 0.97000 * 119.99838 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2574 1.0941 0.0000 4 6 3.5423 0.6796 -0.0006 5 6 3.5414 -0.7309 -0.0003 6 6 4.7360 -1.6020 -0.0003 7 6 4.7531 -2.9693 -0.0058 8 6 6.1350 -3.2909 0.0004 9 6 6.7323 -4.6489 0.0003 10 8 6.0137 -5.6286 -0.0002 11 7 8.0720 -4.7958 0.0007 12 6 8.6618 -6.1368 0.0011 13 6 10.1875 -6.0230 0.0009 14 1 10.5118 -5.4832 0.8907 15 8 10.6123 -5.3162 -1.1662 16 6 10.8035 -7.4235 0.0007 17 7 12.2597 -7.3165 0.1209 18 6 13.0299 -8.4486 0.1431 19 1 12.5638 -9.4203 0.0716 20 6 14.4096 -8.3472 0.2565 21 7 15.1499 -9.4354 0.2783 22 14 15.2157 -6.6666 0.3795 23 1 15.3183 -6.2701 1.8070 24 1 16.5744 -6.7245 -0.2171 25 1 14.3953 -5.6693 -0.3535 26 7 6.7789 -2.1490 0.0004 27 8 6.0213 -1.2072 0.0000 28 7 2.2866 -1.1346 -0.0054 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8901 0.5138 32 1 1.9219 2.1206 0.0004 33 1 4.4155 1.3150 -0.0003 34 1 3.9116 -3.6461 -0.0115 35 1 8.6457 -4.0137 0.0007 36 1 8.3380 -6.6765 -0.8888 37 1 8.3375 -6.6761 0.8911 38 1 10.3578 -5.7401 -1.9972 39 1 10.4104 -7.9934 0.8426 40 1 10.5521 -7.9309 -0.9306 41 1 12.6783 -6.4438 0.1848 42 1 16.1140 -9.3645 0.3571 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699051177.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:19 Heat of formation + Delta-G solvation = 80.905653 kcal Electronic energy + Delta-G solvation = -26778.044341 eV Core-core repulsion = 22571.558596 eV Total energy + Delta-G solvation = -4206.485745 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.42708 -41.71406 -39.87361 -37.80689 -34.80332 -34.64674 -34.26339 -34.07485 -32.01816 -31.47547 -30.71807 -29.59004 -27.36505 -26.34353 -24.40718 -23.75395 -22.46908 -21.86293 -21.51421 -21.42815 -20.04028 -18.53099 -18.19998 -17.74093 -17.23721 -17.10371 -16.42679 -16.14251 -16.06619 -15.47317 -15.13624 -14.85568 -14.53665 -14.37228 -14.30502 -13.85890 -13.75456 -13.50431 -13.29704 -13.24928 -13.07806 -12.78739 -12.40838 -12.10852 -12.03206 -11.39062 -11.31239 -10.97841 -10.86759 -10.84741 -10.83393 -10.57748 -10.16062 -9.79848 -9.56577 -9.56417 -9.31863 -9.05014 -8.92545 -7.25790 -5.77315 -3.13722 0.37000 1.00595 1.44496 1.55732 2.46718 2.49083 2.68780 2.91390 3.40630 3.46894 3.47883 3.58545 3.90716 3.94998 4.27168 4.50526 4.51562 4.53341 4.60697 4.61967 4.65007 4.79343 4.86745 4.99953 5.09013 5.12104 5.33750 5.43488 5.49576 5.51332 5.63498 5.74509 5.80583 5.83735 6.13352 6.29689 6.40854 6.53565 6.89570 7.15843 7.58684 7.76182 7.86844 7.98104 8.41075 9.20382 9.92419 10.11843 11.40640 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.035804 B = 0.001664 C = 0.001602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.848342 B =16824.769311 C =17474.668699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.364 5.364 3 C 0.059 3.941 4 C -0.244 4.244 5 C 0.137 3.863 6 C 0.039 3.961 7 C -0.140 4.140 8 C -0.022 4.022 9 C 0.597 3.403 10 O -0.521 6.521 11 N -0.704 5.704 12 C 0.089 3.911 13 C 0.084 3.916 14 H 0.106 0.894 15 O -0.555 6.555 16 C 0.132 3.868 17 N -0.749 5.749 18 C -0.249 4.249 19 H 0.090 0.910 20 C 0.007 3.993 21 N -0.933 5.933 22 Si 0.884 3.116 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.272 1.272 26 N -0.319 5.319 27 O 0.141 5.859 28 N -0.259 5.259 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.183 0.817 33 H 0.160 0.840 34 H 0.187 0.813 35 H 0.412 0.588 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.376 0.624 39 H 0.039 0.961 40 H 0.033 0.967 41 H 0.366 0.634 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.553 25.362 -1.030 41.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.148 5.148 3 C -0.086 4.086 4 C -0.273 4.273 5 C -0.027 4.027 6 C -0.026 4.026 7 C -0.165 4.165 8 C -0.180 4.180 9 C 0.380 3.620 10 O -0.396 6.396 11 N -0.356 5.356 12 C -0.035 4.035 13 C 0.024 3.976 14 H 0.124 0.876 15 O -0.361 6.361 16 C 0.004 3.996 17 N -0.396 5.396 18 C -0.379 4.379 19 H 0.108 0.892 20 C -0.189 4.189 21 N -0.581 5.581 22 Si 0.714 3.286 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.198 1.198 26 N -0.017 5.017 27 O 0.062 5.938 28 N -0.085 5.085 29 H 0.098 0.902 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.200 0.800 33 H 0.178 0.822 34 H 0.205 0.795 35 H 0.248 0.752 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.224 0.776 39 H 0.057 0.943 40 H 0.051 0.949 41 H 0.199 0.801 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -32.344 24.045 -0.592 40.307 hybrid contribution 0.470 1.442 -0.286 1.544 sum -31.874 25.487 -0.879 40.821 Atomic orbital electron populations 1.21999 0.73195 1.05076 1.03959 1.48568 1.06982 1.03304 1.55935 1.22570 0.90693 0.93743 1.01588 1.21580 0.97844 0.93184 1.14715 1.18777 0.88720 0.91751 1.03458 1.20773 0.84260 0.91488 1.06073 1.22657 0.96712 0.93718 1.03382 1.23387 0.92624 0.94147 1.07870 1.16810 0.82500 0.85341 0.77317 1.90826 1.60887 1.38133 1.49717 1.45767 1.05786 1.10597 1.73438 1.22207 0.94241 0.83128 1.03936 1.22473 0.90035 0.95349 0.89714 0.87611 1.86570 1.81298 1.52331 1.15865 1.21170 0.86057 0.92691 0.99719 1.42573 1.00816 1.05770 1.90397 1.19043 0.88869 0.86801 1.43140 0.89232 1.24666 0.95959 0.96609 1.01702 1.69711 1.04947 1.26401 1.56992 0.86544 0.79036 0.85133 0.77924 1.21093 1.21712 1.19832 1.74210 1.16553 0.95538 1.15440 1.84883 1.12779 1.30231 1.65875 1.77694 0.99786 1.07495 1.23545 0.90183 0.88824 0.88870 0.79966 0.82230 0.79540 0.75197 0.90320 0.89670 0.77631 0.94343 0.94950 0.80081 0.93016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.15 11.46 59.85 0.69 0.83 16 2 N -0.36 -2.08 4.01 -68.20 -0.27 -2.36 16 3 C 0.06 0.25 11.46 -17.27 -0.20 0.06 16 4 C -0.24 -1.55 10.77 -39.67 -0.43 -1.98 16 5 C 0.14 1.23 7.11 -82.87 -0.59 0.64 16 6 C 0.04 0.38 7.35 -36.19 -0.27 0.12 16 7 C -0.14 -1.52 10.94 -38.73 -0.42 -1.94 16 8 C -0.02 -0.27 7.18 -82.62 -0.59 -0.86 16 9 C 0.60 8.15 7.85 -12.10 -0.09 8.06 16 10 O -0.52 -8.44 16.95 5.37 0.09 -8.35 16 11 N -0.70 -8.75 5.45 -61.09 -0.33 -9.08 16 12 C 0.09 1.12 5.34 -4.04 -0.02 1.10 16 13 C 0.08 1.22 3.09 -26.73 -0.08 1.14 16 14 H 0.11 1.56 8.14 -51.93 -0.42 1.13 16 15 O -0.56 -8.28 13.03 -35.23 -0.46 -8.74 16 16 C 0.13 2.43 5.90 -4.04 -0.02 2.40 16 17 N -0.75 -17.85 5.35 -59.91 -0.32 -18.17 16 18 C -0.25 -7.12 10.47 -15.06 -0.16 -7.27 16 19 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 20 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 21 N -0.93 -29.58 13.97 55.49 0.78 -28.81 16 22 Si 0.88 22.52 27.74 -169.99 -4.71 17.80 16 23 H -0.28 -7.18 7.11 56.52 0.40 -6.77 16 24 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 25 H -0.27 -6.65 6.52 56.52 0.37 -6.29 16 26 N -0.32 -3.74 11.82 33.35 0.39 -3.34 16 27 O 0.14 1.45 11.20 16.07 0.18 1.63 16 28 N -0.26 -2.36 12.60 33.36 0.42 -1.94 16 29 H 0.08 0.04 8.14 -51.93 -0.42 -0.38 16 30 H 0.09 0.15 8.14 -51.93 -0.42 -0.28 16 31 H 0.09 -0.11 8.14 -51.93 -0.42 -0.54 16 32 H 0.18 0.03 8.06 -52.49 -0.42 -0.39 16 33 H 0.16 0.72 8.06 -52.49 -0.42 0.30 16 34 H 0.19 1.85 8.06 -52.49 -0.42 1.43 16 35 H 0.41 4.87 8.10 -40.82 -0.33 4.54 16 36 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.38 4.57 9.04 45.56 0.41 4.98 16 39 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.37 8.70 5.53 -40.82 -0.23 8.48 16 42 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 LS Contribution 375.61 15.07 5.66 5.66 Total: -1.00 -37.47 375.61 -5.25 -42.72 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -4.39 Total: 10.60 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: -2.29 Total: 2.38 kcal Atomic # 7 Polarization: -64.36 SS G_CDS: 0.66 Total: -63.70 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: -0.19 Total: -15.46 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.71 Total: 17.80 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -37.47 -5.25 -42.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699051177.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.626 kcal (2) G-P(sol) polarization free energy of solvation -37.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds