Wall clock time and date at job start Tue Mar 31 2020 18:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.35089 * 125.91378 * 2 1 4 4 C 1.35005 * 108.03314 * 180.02562 * 3 2 1 5 5 C 1.41046 * 107.84748 * 359.97438 * 4 3 2 6 6 C 1.47849 * 126.06853 * 180.02562 * 5 4 3 7 7 C 1.36738 * 126.81733 * 180.30230 * 6 5 4 8 8 C 1.41886 * 103.81625 * 180.13623 * 7 6 5 9 9 C 1.48352 * 126.84310 * 179.89113 * 8 7 6 10 10 O 1.21498 * 119.99689 * 359.70573 * 9 8 7 11 11 N 1.34767 * 120.00143 * 179.70778 * 9 8 7 12 12 C 1.46500 * 120.00203 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47473 * 179.97438 * 12 11 9 14 14 H 1.09001 * 109.47289 * 60.00327 * 13 12 11 15 15 O 1.42905 * 109.47264 * 300.00160 * 13 12 11 16 16 C 1.52997 * 109.47232 * 180.02562 * 13 12 11 17 17 N 1.46505 * 109.47119 * 185.00149 * 16 13 12 18 18 C 1.36939 * 120.00179 * 179.97438 * 17 16 13 19 19 H 1.08002 * 119.99755 * 0.02562 * 18 17 16 20 20 C 1.38809 * 119.99895 * 179.97438 * 18 17 16 21 21 N 1.31628 * 119.99663 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 120.00353 * 0.02562 * 20 18 17 23 23 H 1.48506 * 109.46957 * 89.99940 * 22 20 18 24 24 H 1.48502 * 109.47127 * 209.99941 * 22 20 18 25 25 H 1.48498 * 109.46889 * 330.00053 * 22 20 18 26 26 N 1.31096 * 106.31565 * 359.62665 * 8 7 6 27 27 O 1.20869 * 111.76767 * 0.24265 * 26 8 7 28 28 N 1.31823 * 107.86534 * 0.26056 * 5 4 3 29 29 H 1.09001 * 109.46722 * 89.99784 * 1 2 3 30 30 H 1.09000 * 109.47162 * 210.00231 * 1 2 3 31 31 H 1.09003 * 109.46807 * 330.00406 * 1 2 3 32 32 H 1.07996 * 125.98354 * 0.02562 * 3 2 1 33 33 H 1.07997 * 126.07998 * 180.02562 * 4 3 2 34 34 H 1.07997 * 128.09194 * 0.02562 * 7 6 5 35 35 H 0.97004 * 120.00402 * 359.97438 * 11 9 8 36 36 H 1.09001 * 109.47049 * 60.00181 * 12 11 9 37 37 H 1.09002 * 109.47129 * 300.00254 * 12 11 9 38 38 H 0.96696 * 114.00036 * 299.99911 * 15 13 12 39 39 H 1.09000 * 109.47278 * 304.99661 * 16 13 12 40 40 H 1.08994 * 109.47510 * 65.00170 * 16 13 12 41 41 H 0.97002 * 120.00209 * 359.97438 * 17 16 13 42 42 H 0.97000 * 119.99838 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2574 1.0941 0.0000 4 6 3.5423 0.6796 -0.0006 5 6 3.5414 -0.7309 -0.0003 6 6 4.7360 -1.6020 -0.0003 7 6 4.7531 -2.9693 -0.0058 8 6 6.1350 -3.2909 0.0004 9 6 6.7323 -4.6489 0.0003 10 8 6.0137 -5.6286 -0.0002 11 7 8.0720 -4.7958 0.0007 12 6 8.6618 -6.1368 0.0011 13 6 10.1875 -6.0230 0.0009 14 1 10.5118 -5.4832 0.8907 15 8 10.6123 -5.3162 -1.1662 16 6 10.8035 -7.4235 0.0007 17 7 12.2597 -7.3165 0.1209 18 6 13.0299 -8.4486 0.1431 19 1 12.5638 -9.4203 0.0716 20 6 14.4096 -8.3472 0.2565 21 7 15.1499 -9.4354 0.2783 22 14 15.2157 -6.6666 0.3795 23 1 15.3183 -6.2701 1.8070 24 1 16.5744 -6.7245 -0.2171 25 1 14.3953 -5.6693 -0.3535 26 7 6.7789 -2.1490 0.0004 27 8 6.0213 -1.2072 0.0000 28 7 2.2866 -1.1346 -0.0054 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8901 0.5138 32 1 1.9219 2.1206 0.0004 33 1 4.4155 1.3150 -0.0003 34 1 3.9116 -3.6461 -0.0115 35 1 8.6457 -4.0137 0.0007 36 1 8.3380 -6.6765 -0.8888 37 1 8.3375 -6.6761 0.8911 38 1 10.3578 -5.7401 -1.9972 39 1 10.4104 -7.9934 0.8426 40 1 10.5521 -7.9309 -0.9306 41 1 12.6783 -6.4438 0.1848 42 1 16.1140 -9.3645 0.3571 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699051177.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:18 Heat of formation + Delta-G solvation = 49.336588 kcal Electronic energy + Delta-G solvation = -26779.413278 eV Core-core repulsion = 22571.558596 eV Total energy + Delta-G solvation = -4207.854682 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -46.28378 -42.14529 -40.97157 -39.07281 -36.26650 -35.56862 -35.43472 -34.86582 -33.50331 -32.61529 -31.17967 -31.01718 -27.77415 -27.72065 -25.65202 -24.47074 -23.93477 -22.91778 -22.75897 -21.85483 -21.02229 -19.79005 -19.15160 -19.05817 -18.19296 -17.88156 -17.37983 -17.29643 -16.58356 -16.54057 -16.42298 -16.01115 -15.84357 -15.44727 -15.11673 -15.01036 -14.79795 -14.65691 -14.31875 -14.04749 -13.77791 -13.73864 -13.42787 -13.28144 -13.25617 -12.94231 -12.82070 -12.26914 -11.92919 -11.87881 -11.84599 -11.75209 -11.70943 -11.55574 -11.08647 -10.99518 -10.37633 -10.10512 -9.53866 -9.32788 -8.04491 -5.38281 -0.38769 0.12268 1.02582 1.06926 1.39559 1.41461 1.49848 1.62942 1.82797 1.95665 1.98212 2.47823 2.66018 3.17656 3.26079 3.33832 3.47792 3.57856 3.68370 3.90029 3.94618 4.04160 4.08909 4.15369 4.19172 4.48011 4.55151 4.61244 4.62924 4.66500 4.74609 4.78513 4.91203 4.91624 5.06365 5.15120 5.35929 5.72813 6.03383 6.13171 6.18892 6.42595 6.69374 6.74854 6.84673 7.06322 7.81657 8.00378 9.16674 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.035804 B = 0.001664 C = 0.001602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.848342 B =16824.769311 C =17474.668699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.362 5.362 3 C 0.075 3.925 4 C -0.261 4.261 5 C 0.110 3.890 6 C 0.054 3.946 7 C -0.154 4.154 8 C -0.034 4.034 9 C 0.599 3.401 10 O -0.551 6.551 11 N -0.695 5.695 12 C 0.098 3.902 13 C 0.104 3.896 14 H 0.109 0.891 15 O -0.564 6.564 16 C 0.125 3.875 17 N -0.753 5.753 18 C -0.238 4.238 19 H 0.058 0.942 20 C -0.061 4.061 21 N -0.982 5.982 22 Si 0.955 3.045 23 H -0.278 1.278 24 H -0.295 1.295 25 H -0.253 1.253 26 N -0.327 5.327 27 O 0.150 5.850 28 N -0.298 5.298 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.127 0.873 32 H 0.229 0.771 33 H 0.174 0.826 34 H 0.189 0.811 35 H 0.417 0.583 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.389 0.611 39 H 0.042 0.958 40 H 0.038 0.962 41 H 0.368 0.632 42 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.424 29.001 -1.087 45.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.146 5.146 3 C -0.070 4.070 4 C -0.290 4.290 5 C -0.052 4.052 6 C -0.011 4.011 7 C -0.178 4.178 8 C -0.191 4.191 9 C 0.383 3.617 10 O -0.428 6.428 11 N -0.347 5.347 12 C -0.026 4.026 13 C 0.044 3.956 14 H 0.127 0.873 15 O -0.372 6.372 16 C -0.002 4.002 17 N -0.399 5.399 18 C -0.369 4.369 19 H 0.076 0.924 20 C -0.253 4.253 21 N -0.633 5.633 22 Si 0.783 3.217 23 H -0.204 1.204 24 H -0.222 1.222 25 H -0.178 1.178 26 N -0.025 5.025 27 O 0.070 5.930 28 N -0.126 5.126 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.145 0.855 32 H 0.246 0.754 33 H 0.191 0.809 34 H 0.206 0.794 35 H 0.254 0.746 36 H 0.103 0.897 37 H 0.106 0.894 38 H 0.238 0.762 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.202 0.798 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -34.252 27.701 -0.661 44.056 hybrid contribution 0.837 0.346 -0.293 0.951 sum -33.415 28.046 -0.954 43.636 Atomic orbital electron populations 1.22378 0.70976 1.06569 1.05181 1.48980 1.08265 1.02879 1.54469 1.23281 0.89736 0.95134 0.98881 1.21900 0.99555 0.92128 1.15406 1.18878 0.88314 0.92866 1.05189 1.20970 0.84385 0.91395 1.04347 1.22710 0.96314 0.94354 1.04468 1.23238 0.93181 0.93695 1.09006 1.16935 0.82519 0.85551 0.76680 1.90806 1.61540 1.39187 1.51287 1.45672 1.05528 1.10661 1.72805 1.22055 0.92816 0.83335 1.04429 1.22176 0.90736 0.92754 0.89950 0.87320 1.86547 1.81547 1.52516 1.16546 1.21387 0.83292 0.95569 0.99915 1.42561 1.02746 1.04304 1.90317 1.19052 0.89398 0.87224 1.41258 0.92351 1.25494 0.96728 1.00646 1.02428 1.69887 1.05118 1.29046 1.59211 0.85399 0.77633 0.80493 0.78216 1.20401 1.22204 1.17755 1.74186 1.16923 0.95495 1.15865 1.84856 1.13002 1.29719 1.65390 1.77608 1.00303 1.09807 1.24899 0.89062 0.89316 0.85450 0.75434 0.80889 0.79356 0.74626 0.89749 0.89408 0.76197 0.93981 0.94414 0.79820 0.93286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.04 11.46 127.77 1.46 1.50 16 2 N -0.36 -3.37 4.01 -369.70 -1.48 -4.85 16 3 C 0.08 0.41 11.46 83.45 0.96 1.37 16 4 C -0.26 -2.83 10.77 22.21 0.24 -2.59 16 5 C 0.11 1.90 7.11 42.38 0.30 2.21 16 6 C 0.05 1.06 7.35 24.46 0.18 1.24 16 7 C -0.15 -3.39 10.94 22.82 0.25 -3.14 16 8 C -0.03 -0.83 7.18 42.85 0.31 -0.52 16 9 C 0.60 16.16 7.85 86.94 0.68 16.85 16 10 O -0.55 -17.89 16.95 -3.71 -0.06 -17.95 16 11 N -0.70 -16.47 5.45 -465.49 -2.53 -19.01 16 12 C 0.10 2.32 5.34 86.38 0.46 2.78 16 13 C 0.10 2.81 3.09 30.59 0.09 2.90 16 14 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 15 O -0.56 -15.51 13.03 -148.98 -1.94 -17.45 16 16 C 0.13 4.45 5.90 86.38 0.51 4.96 16 17 N -0.75 -35.01 5.35 -343.45 -1.84 -36.85 16 18 C -0.24 -13.72 10.47 84.03 0.88 -12.84 16 19 H 0.06 3.65 8.06 -2.91 -0.02 3.63 16 20 C -0.06 -3.65 5.50 84.86 0.47 -3.19 16 21 N -0.98 -63.58 13.97 21.65 0.30 -63.28 16 22 Si 0.96 46.38 27.74 68.60 1.90 48.28 16 23 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 24 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 25 H -0.25 -11.33 6.52 99.48 0.65 -10.68 16 26 N -0.33 -7.49 11.82 -49.00 -0.58 -8.07 16 27 O 0.15 3.00 11.20 67.68 0.76 3.76 16 28 N -0.30 -5.28 12.60 -48.36 -0.61 -5.89 16 29 H 0.09 -0.13 8.14 -2.39 -0.02 -0.15 16 30 H 0.09 0.15 8.14 -2.39 -0.02 0.13 16 31 H 0.13 -0.81 8.14 -2.39 -0.02 -0.83 16 32 H 0.23 -1.06 8.06 -2.91 -0.02 -1.09 16 33 H 0.17 1.22 8.06 -2.91 -0.02 1.20 16 34 H 0.19 3.94 8.06 -2.91 -0.02 3.92 16 35 H 0.42 9.24 8.10 -92.71 -0.75 8.49 16 36 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.39 8.56 9.04 -74.06 -0.67 7.89 16 39 H 0.04 1.49 8.14 -2.39 -0.02 1.48 16 40 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.37 16.71 5.53 -92.71 -0.51 16.20 16 42 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 Total: -1.00 -82.22 375.61 -0.18 -82.40 By element: Atomic # 1 Polarization: 28.28 SS G_CDS: -0.89 Total: 27.39 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: 6.79 Total: 11.51 kcal Atomic # 7 Polarization: -131.20 SS G_CDS: -6.74 Total: -137.94 kcal Atomic # 8 Polarization: -30.40 SS G_CDS: -1.25 Total: -31.64 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 1.90 Total: 48.28 kcal Total: -82.22 -0.18 -82.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699051177.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.737 kcal (2) G-P(sol) polarization free energy of solvation -82.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds