Wall clock time and date at job start Tue Mar 31 2020 18:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46505 * 119.99624 * 2 1 4 4 C 1.53001 * 109.46876 * 269.99546 * 3 2 1 5 5 C 1.53006 * 109.46906 * 180.02562 * 4 3 2 6 6 N 1.46498 * 109.47120 * 180.02562 * 5 4 3 7 7 C 1.36939 * 120.00223 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99850 * 359.97438 * 7 6 5 9 9 C 1.38810 * 119.99979 * 179.97438 * 7 6 5 10 10 N 1.31614 * 120.00351 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99640 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.47377 * 60.00235 * 11 9 7 13 13 H 1.48509 * 109.46994 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47641 * 300.00054 * 11 9 7 15 15 C 1.34771 * 120.00601 * 179.97438 * 2 1 3 16 16 O 1.21600 * 120.00415 * 184.11013 * 15 2 1 17 17 C 1.47521 * 119.99745 * 4.10619 * 15 2 1 18 18 N 1.34400 * 125.77265 * 353.77323 * 17 15 2 19 19 N 1.28760 * 109.52530 * 179.72781 * 18 17 15 20 20 N 1.40209 * 108.36799 * 0.39530 * 19 18 17 21 21 C 1.46500 * 126.59686 * 179.87679 * 20 19 18 22 22 C 1.34816 * 106.80992 * 359.60803 * 20 19 18 23 23 C 1.50701 * 126.58140 * 180.20208 * 22 20 19 24 24 F 1.39899 * 109.46631 * 30.03486 * 23 22 20 25 25 F 1.39905 * 109.46806 * 150.02638 * 23 22 20 26 26 F 1.39894 * 109.47523 * 270.03192 * 23 22 20 27 27 H 1.08994 * 109.47340 * 264.21714 * 1 2 3 28 28 H 1.09003 * 109.47132 * 24.22578 * 1 2 3 29 29 H 1.09004 * 109.46579 * 144.22119 * 1 2 3 30 30 H 1.08996 * 109.47037 * 29.99743 * 3 2 1 31 31 H 1.08997 * 109.47010 * 149.99915 * 3 2 1 32 32 H 1.08996 * 109.47448 * 299.99945 * 4 3 2 33 33 H 1.08997 * 109.46999 * 60.00363 * 4 3 2 34 34 H 1.08996 * 109.46859 * 300.00105 * 5 4 3 35 35 H 1.09002 * 109.46938 * 59.99830 * 5 4 3 36 36 H 0.97003 * 119.99950 * 0.02562 * 6 5 4 37 37 H 0.96996 * 120.00569 * 179.97438 * 10 9 7 38 38 H 1.08996 * 109.47003 * 269.68447 * 21 20 19 39 39 H 1.09001 * 109.46901 * 29.68493 * 21 20 19 40 40 H 1.08995 * 109.47180 * 149.68124 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7104 -1.4425 5 6 3.2179 3.0352 -1.4425 6 7 3.4616 3.4584 -2.8237 7 6 4.1346 4.6244 -3.0740 8 1 4.4854 5.2323 -2.2531 9 6 4.3660 5.0250 -4.3828 10 7 3.9381 4.2845 -5.3831 11 14 5.2834 6.6160 -4.7241 12 1 6.6407 6.5429 -4.1260 13 1 5.3995 6.8155 -6.1911 14 1 4.5400 7.7542 -4.1266 15 6 2.1389 -1.1671 0.0005 16 8 3.3526 -1.1684 0.0760 17 6 1.4042 -2.4431 -0.0904 18 7 0.0680 -2.5842 -0.0599 19 7 -0.2356 -3.8308 -0.1679 20 7 0.9528 -4.5680 -0.2674 21 6 1.0699 -6.0220 -0.4031 22 6 1.9670 -3.6810 -0.2203 23 6 3.4390 -3.9950 -0.2956 24 9 3.6314 -5.1452 -1.0683 25 9 4.1155 -2.9203 -0.8828 26 9 3.9365 -4.2107 0.9939 27 1 -0.3634 -0.1035 1.0224 28 1 -0.3633 0.9372 -0.4217 29 1 -0.3632 -0.8338 -0.6009 30 1 1.6082 2.0284 0.5138 31 1 3.1498 1.1385 0.5138 32 1 3.0416 0.9508 -1.9563 33 1 1.5000 1.8407 -1.9564 34 1 2.6291 3.7950 -0.9286 35 1 4.1703 2.9045 -0.9287 36 1 3.1456 2.9129 -3.5610 37 1 4.0994 4.5646 -6.2977 38 1 1.1325 -6.4754 0.5861 39 1 0.1956 -6.4097 -0.9259 40 1 1.9688 -6.2628 -0.9706 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699538499.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:31 Heat of formation + Delta-G solvation = -48.851075 kcal Electronic energy + Delta-G solvation = -29503.724378 eV Core-core repulsion = 24749.755219 eV Total energy + Delta-G solvation = -4753.969159 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.131 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -50.63383 -48.25078 -47.92637 -42.98241 -39.73701 -36.27735 -35.53324 -34.70375 -32.58343 -32.02703 -29.94431 -28.60318 -27.09221 -26.79793 -25.48933 -23.72122 -22.80549 -22.17997 -20.94330 -20.07829 -19.04070 -18.82251 -18.56494 -17.72968 -17.05378 -16.91492 -16.37110 -16.00197 -15.44192 -15.14814 -14.81266 -14.66581 -14.51386 -14.40072 -14.33003 -14.08984 -14.06723 -13.97249 -13.83979 -13.36741 -13.23520 -12.98801 -12.92682 -12.83231 -12.37189 -11.97236 -11.87583 -11.34666 -11.08041 -10.88261 -10.79264 -10.71166 -10.35132 -10.18832 -10.03304 -10.00759 -9.66106 -8.80546 -8.67506 -6.85607 -5.70064 -2.98650 0.08442 1.04960 1.12303 1.97002 2.70256 2.92125 2.96863 3.38186 3.48895 3.52582 3.54089 3.69887 3.79271 3.82389 4.27724 4.33678 4.60357 4.65278 4.69506 4.87855 5.17715 5.28574 5.33437 5.38536 5.57487 5.62676 5.73801 5.89489 5.97901 6.11649 6.34474 6.44387 6.51925 6.91961 6.93280 7.11289 7.25018 7.75317 7.92695 8.48957 9.59610 10.18609 10.53126 11.53044 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.018197 B = 0.002558 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.373595 B =10942.947593 C =11579.792590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.592 5.592 3 C 0.119 3.881 4 C -0.140 4.140 5 C 0.157 3.843 6 N -0.734 5.734 7 C -0.238 4.238 8 H 0.070 0.930 9 C -0.016 4.016 10 N -0.935 5.935 11 Si 0.908 3.092 12 H -0.286 1.286 13 H -0.291 1.291 14 H -0.286 1.286 15 C 0.586 3.414 16 O -0.511 6.511 17 C -0.022 4.022 18 N -0.198 5.198 19 N -0.031 5.031 20 N -0.323 5.323 21 C 0.065 3.935 22 C 0.004 3.996 23 C 0.547 3.453 24 F -0.174 7.174 25 F -0.122 7.122 26 F -0.159 7.159 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.019 0.981 35 H 0.021 0.979 36 H 0.383 0.617 37 H 0.255 0.745 38 H 0.100 0.900 39 H 0.114 0.886 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.925 -24.839 14.120 29.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.323 5.323 3 C -0.003 4.003 4 C -0.179 4.179 5 C 0.029 3.971 6 N -0.378 5.378 7 C -0.369 4.369 8 H 0.088 0.912 9 C -0.212 4.212 10 N -0.584 5.584 11 Si 0.739 3.261 12 H -0.213 1.213 13 H -0.217 1.217 14 H -0.213 1.213 15 C 0.370 3.630 16 O -0.385 6.385 17 C -0.163 4.163 18 N -0.069 5.069 19 N -0.010 5.010 20 N -0.110 5.110 21 C -0.075 4.075 22 C -0.136 4.136 23 C 0.490 3.510 24 F -0.155 7.155 25 F -0.103 7.103 26 F -0.140 7.140 27 H 0.077 0.923 28 H 0.094 0.906 29 H 0.112 0.888 30 H 0.101 0.899 31 H 0.107 0.893 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.037 0.963 35 H 0.039 0.961 36 H 0.217 0.783 37 H 0.065 0.935 38 H 0.119 0.881 39 H 0.132 0.868 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -9.695 -24.801 14.222 30.188 hybrid contribution 1.364 0.409 -0.615 1.551 sum -8.331 -24.392 13.607 29.146 Atomic orbital electron populations 1.22250 0.78275 1.04281 1.02671 1.47658 1.07826 1.05529 1.71329 1.21625 0.97686 0.82706 0.98310 1.22081 1.01263 0.99102 0.95474 1.20536 0.96056 0.91806 0.88726 1.42348 1.68321 1.25978 1.01119 1.19206 1.27809 0.98149 0.91780 0.91185 1.24749 1.01782 0.99054 0.95573 1.69653 1.51595 1.38981 0.98160 0.86247 0.79710 0.83298 0.76809 1.21258 1.21721 1.21285 1.16755 0.86289 0.81743 0.78225 1.90939 1.11949 1.86156 1.49494 1.21473 0.89902 0.94161 1.10780 1.74913 1.11487 1.09246 1.11256 1.82112 1.02533 0.96855 1.19535 1.50300 1.04427 1.09407 1.46872 1.22733 1.07207 0.71899 1.05707 1.21632 0.91024 0.91890 1.09024 1.16881 0.83735 0.75282 0.75081 1.93154 1.95646 1.50958 1.75792 1.93483 1.80218 1.53185 1.83367 1.93283 1.88452 1.94532 1.37772 0.92274 0.90589 0.88796 0.89908 0.89253 0.91493 0.91807 0.96337 0.96095 0.78317 0.93512 0.88132 0.86790 0.86985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.71 9.63 59.84 0.58 1.29 16 2 N -0.59 -7.78 2.87 -182.82 -0.53 -8.31 16 3 C 0.12 1.64 5.41 -4.04 -0.02 1.62 16 4 C -0.14 -2.41 5.65 -26.73 -0.15 -2.56 16 5 C 0.16 3.28 6.26 -4.04 -0.03 3.25 16 6 N -0.73 -19.54 5.60 -59.91 -0.34 -19.88 16 7 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 9 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 10 N -0.94 -29.17 13.06 55.49 0.72 -28.44 16 11 Si 0.91 22.98 29.55 -169.99 -5.02 17.95 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 14 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 15 C 0.59 8.49 7.55 -12.48 -0.09 8.39 16 16 O -0.51 -8.65 12.80 5.28 0.07 -8.58 16 17 C -0.02 -0.27 6.68 -83.55 -0.56 -0.83 16 18 N -0.20 -2.28 8.79 32.85 0.29 -1.99 16 19 N -0.03 -0.32 13.78 60.35 0.83 0.52 16 20 N -0.32 -2.72 4.03 -63.59 -0.26 -2.98 16 21 C 0.06 0.22 11.24 59.85 0.67 0.89 16 22 C 0.00 0.04 6.46 -81.87 -0.53 -0.49 16 23 C 0.55 5.87 3.19 36.01 0.11 5.98 16 24 F -0.17 -1.46 14.67 2.25 0.03 -1.43 16 25 F -0.12 -1.71 13.59 2.25 0.03 -1.68 16 26 F -0.16 -1.70 17.30 2.25 0.04 -1.67 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.08 0.71 8.03 -51.93 -0.42 0.30 16 29 H 0.09 1.01 5.23 -51.93 -0.27 0.74 16 30 H 0.08 0.96 8.07 -51.93 -0.42 0.54 16 31 H 0.09 1.31 7.37 -51.93 -0.38 0.93 16 32 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.38 10.74 7.67 -40.82 -0.31 10.43 16 37 H 0.26 7.67 8.31 -40.82 -0.34 7.34 16 38 H 0.10 0.15 8.14 -51.93 -0.42 -0.27 16 39 H 0.11 0.17 8.14 -51.93 -0.42 -0.25 16 40 H 0.11 0.31 5.69 -51.93 -0.30 0.01 16 LS Contribution 350.13 15.07 5.28 5.28 Total: -1.00 -35.04 350.13 -3.71 -38.75 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -4.60 Total: 2.55 kcal Atomic # 6 Polarization: 10.16 SS G_CDS: -0.26 Total: 9.90 kcal Atomic # 7 Polarization: -61.81 SS G_CDS: 0.73 Total: -61.08 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: 0.07 Total: -8.58 kcal Atomic # 9 Polarization: -4.87 SS G_CDS: 0.10 Total: -4.77 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -5.02 Total: 17.95 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -35.04 -3.71 -38.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699538499.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.097 kcal (2) G-P(sol) polarization free energy of solvation -35.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds