Wall clock time and date at job start Tue Mar 31 2020 18:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46505 * 119.99624 * 2 1 4 4 C 1.53001 * 109.46876 * 269.99546 * 3 2 1 5 5 C 1.53006 * 109.46906 * 180.02562 * 4 3 2 6 6 N 1.46498 * 109.47120 * 180.02562 * 5 4 3 7 7 C 1.36939 * 120.00223 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99850 * 359.97438 * 7 6 5 9 9 C 1.38810 * 119.99979 * 179.97438 * 7 6 5 10 10 N 1.31614 * 120.00351 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99640 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.47377 * 60.00235 * 11 9 7 13 13 H 1.48509 * 109.46994 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47641 * 300.00054 * 11 9 7 15 15 C 1.34771 * 120.00601 * 179.97438 * 2 1 3 16 16 O 1.21600 * 120.00415 * 184.11013 * 15 2 1 17 17 C 1.47521 * 119.99745 * 4.10619 * 15 2 1 18 18 N 1.34400 * 125.77265 * 353.77323 * 17 15 2 19 19 N 1.28760 * 109.52530 * 179.72781 * 18 17 15 20 20 N 1.40209 * 108.36799 * 0.39530 * 19 18 17 21 21 C 1.46500 * 126.59686 * 179.87679 * 20 19 18 22 22 C 1.34816 * 106.80992 * 359.60803 * 20 19 18 23 23 C 1.50701 * 126.58140 * 180.20208 * 22 20 19 24 24 F 1.39899 * 109.46631 * 30.03486 * 23 22 20 25 25 F 1.39905 * 109.46806 * 150.02638 * 23 22 20 26 26 F 1.39894 * 109.47523 * 270.03192 * 23 22 20 27 27 H 1.08994 * 109.47340 * 264.21714 * 1 2 3 28 28 H 1.09003 * 109.47132 * 24.22578 * 1 2 3 29 29 H 1.09004 * 109.46579 * 144.22119 * 1 2 3 30 30 H 1.08996 * 109.47037 * 29.99743 * 3 2 1 31 31 H 1.08997 * 109.47010 * 149.99915 * 3 2 1 32 32 H 1.08996 * 109.47448 * 299.99945 * 4 3 2 33 33 H 1.08997 * 109.46999 * 60.00363 * 4 3 2 34 34 H 1.08996 * 109.46859 * 300.00105 * 5 4 3 35 35 H 1.09002 * 109.46938 * 59.99830 * 5 4 3 36 36 H 0.97003 * 119.99950 * 0.02562 * 6 5 4 37 37 H 0.96996 * 120.00569 * 179.97438 * 10 9 7 38 38 H 1.08996 * 109.47003 * 269.68447 * 21 20 19 39 39 H 1.09001 * 109.46901 * 29.68493 * 21 20 19 40 40 H 1.08995 * 109.47180 * 149.68124 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7104 -1.4425 5 6 3.2179 3.0352 -1.4425 6 7 3.4616 3.4584 -2.8237 7 6 4.1346 4.6244 -3.0740 8 1 4.4854 5.2323 -2.2531 9 6 4.3660 5.0250 -4.3828 10 7 3.9381 4.2845 -5.3831 11 14 5.2834 6.6160 -4.7241 12 1 6.6407 6.5429 -4.1260 13 1 5.3995 6.8155 -6.1911 14 1 4.5400 7.7542 -4.1266 15 6 2.1389 -1.1671 0.0005 16 8 3.3526 -1.1684 0.0760 17 6 1.4042 -2.4431 -0.0904 18 7 0.0680 -2.5842 -0.0599 19 7 -0.2356 -3.8308 -0.1679 20 7 0.9528 -4.5680 -0.2674 21 6 1.0699 -6.0220 -0.4031 22 6 1.9670 -3.6810 -0.2203 23 6 3.4390 -3.9950 -0.2956 24 9 3.6314 -5.1452 -1.0683 25 9 4.1155 -2.9203 -0.8828 26 9 3.9365 -4.2107 0.9939 27 1 -0.3634 -0.1035 1.0224 28 1 -0.3633 0.9372 -0.4217 29 1 -0.3632 -0.8338 -0.6009 30 1 1.6082 2.0284 0.5138 31 1 3.1498 1.1385 0.5138 32 1 3.0416 0.9508 -1.9563 33 1 1.5000 1.8407 -1.9564 34 1 2.6291 3.7950 -0.9286 35 1 4.1703 2.9045 -0.9287 36 1 3.1456 2.9129 -3.5610 37 1 4.0994 4.5646 -6.2977 38 1 1.1325 -6.4754 0.5861 39 1 0.1956 -6.4097 -0.9259 40 1 1.9688 -6.2628 -0.9706 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699538499.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:31 Heat of formation + Delta-G solvation = -73.734369 kcal Electronic energy + Delta-G solvation = -29504.803399 eV Core-core repulsion = 24749.755219 eV Total energy + Delta-G solvation = -4755.048180 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.131 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -51.48122 -49.05182 -48.86513 -43.78620 -40.81051 -37.59983 -36.61088 -36.00808 -34.09382 -33.19885 -31.61506 -29.36829 -27.99955 -27.74824 -26.89658 -25.16562 -24.00627 -23.15736 -22.48471 -21.05932 -19.88155 -19.63048 -19.44022 -19.14431 -18.64987 -17.73338 -17.44592 -16.86659 -16.58661 -16.39152 -16.01006 -15.76749 -15.69199 -15.36274 -15.35870 -15.25888 -15.11635 -15.00234 -14.81318 -14.60982 -14.42309 -14.07227 -13.89202 -13.72973 -13.40264 -13.33262 -13.02530 -12.76680 -12.71908 -12.42501 -12.16728 -12.06634 -11.82475 -11.80846 -11.73726 -11.25863 -10.92102 -10.85014 -9.75118 -9.01098 -7.94835 -5.24739 -0.72264 0.22870 0.33782 1.21229 1.47453 1.51770 1.57657 1.70434 1.90299 2.15655 2.55535 2.57027 2.85805 2.95521 3.03806 3.38570 3.49370 3.81378 3.87590 4.07824 4.15074 4.25245 4.33483 4.43004 4.50441 4.54804 4.62020 4.74592 4.75557 4.79717 4.91148 5.10888 5.30158 5.32510 5.48092 5.49323 6.13618 6.27147 6.36622 6.87156 7.32624 8.08456 8.31578 9.28993 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.018197 B = 0.002558 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.373595 B =10942.947593 C =11579.792590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.592 5.592 3 C 0.127 3.873 4 C -0.123 4.123 5 C 0.155 3.845 6 N -0.750 5.750 7 C -0.248 4.248 8 H 0.078 0.922 9 C -0.079 4.079 10 N -0.973 5.973 11 Si 0.978 3.022 12 H -0.278 1.278 13 H -0.295 1.295 14 H -0.274 1.274 15 C 0.579 3.421 16 O -0.545 6.545 17 C -0.041 4.041 18 N -0.203 5.203 19 N -0.034 5.034 20 N -0.305 5.305 21 C 0.049 3.951 22 C 0.002 3.998 23 C 0.552 3.448 24 F -0.159 7.159 25 F -0.145 7.145 26 F -0.159 7.159 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.114 0.886 31 H 0.079 0.921 32 H 0.040 0.960 33 H 0.066 0.934 34 H 0.035 0.965 35 H 0.018 0.982 36 H 0.372 0.628 37 H 0.252 0.748 38 H 0.126 0.874 39 H 0.137 0.863 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.824 -25.470 15.233 31.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.322 5.322 3 C 0.005 3.995 4 C -0.162 4.162 5 C 0.029 3.971 6 N -0.393 5.393 7 C -0.380 4.380 8 H 0.096 0.904 9 C -0.271 4.271 10 N -0.623 5.623 11 Si 0.807 3.193 12 H -0.204 1.204 13 H -0.221 1.221 14 H -0.200 1.200 15 C 0.364 3.636 16 O -0.422 6.422 17 C -0.183 4.183 18 N -0.074 5.074 19 N -0.014 5.014 20 N -0.091 5.091 21 C -0.088 4.088 22 C -0.139 4.139 23 C 0.494 3.506 24 F -0.140 7.140 25 F -0.126 7.126 26 F -0.140 7.140 27 H 0.093 0.907 28 H 0.107 0.893 29 H 0.109 0.891 30 H 0.132 0.868 31 H 0.098 0.902 32 H 0.059 0.941 33 H 0.085 0.915 34 H 0.053 0.947 35 H 0.036 0.964 36 H 0.203 0.797 37 H 0.060 0.940 38 H 0.144 0.856 39 H 0.156 0.844 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.634 -25.460 15.385 31.591 hybrid contribution 1.608 0.445 -0.918 1.905 sum -9.026 -25.015 14.467 30.274 Atomic orbital electron populations 1.22399 0.76420 1.04840 1.03782 1.47737 1.08928 1.04889 1.70681 1.21482 0.98251 0.83910 0.95859 1.21884 1.00228 0.96415 0.97719 1.20700 0.96584 0.93886 0.85972 1.42613 1.68203 1.25424 1.03022 1.19657 1.27313 0.98838 0.92202 0.90370 1.25652 1.03273 1.02723 0.95452 1.69824 1.53292 1.40921 0.98286 0.85142 0.78590 0.79339 0.76270 1.20413 1.22075 1.19981 1.17082 0.86120 0.82706 0.77658 1.90914 1.13366 1.86792 1.51080 1.21251 0.90439 0.93913 1.12719 1.74888 1.10920 1.09925 1.11630 1.82042 1.03125 0.96653 1.19615 1.50647 1.03157 1.10736 1.44603 1.23278 1.08759 0.69025 1.07760 1.21553 0.91288 0.91998 1.09059 1.16804 0.83573 0.75122 0.75054 1.93183 1.95591 1.49841 1.75369 1.93435 1.80762 1.54584 1.83778 1.93279 1.88487 1.94487 1.37797 0.90659 0.89342 0.89103 0.86840 0.90222 0.94104 0.91481 0.94690 0.96399 0.79687 0.93959 0.85594 0.84439 0.86195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.30 9.63 127.77 1.23 2.53 16 2 N -0.59 -15.18 2.87 -850.57 -2.44 -17.62 16 3 C 0.13 3.42 5.41 86.38 0.47 3.89 16 4 C -0.12 -4.25 5.65 30.60 0.17 -4.07 16 5 C 0.16 6.45 6.26 86.38 0.54 6.99 16 6 N -0.75 -40.38 5.60 -343.45 -1.92 -42.31 16 7 C -0.25 -14.45 9.99 84.03 0.84 -13.61 16 8 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 9 C -0.08 -4.70 5.50 84.86 0.47 -4.23 16 10 N -0.97 -61.59 13.06 21.65 0.28 -61.31 16 11 Si 0.98 47.27 29.55 68.60 2.03 49.29 16 12 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 13 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 14 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 15 C 0.58 16.91 7.55 86.69 0.65 17.57 16 16 O -0.54 -18.99 12.80 -4.03 -0.05 -19.05 16 17 C -0.04 -1.02 6.68 40.82 0.27 -0.75 16 18 N -0.20 -4.48 8.79 -49.99 -0.44 -4.92 16 19 N -0.03 -0.65 13.78 37.02 0.51 -0.14 16 20 N -0.30 -4.57 4.03 -355.10 -1.43 -6.00 16 21 C 0.05 0.20 11.24 127.77 1.44 1.63 16 22 C 0.00 0.04 6.46 41.72 0.27 0.31 16 23 C 0.55 11.61 3.19 71.24 0.23 11.84 16 24 F -0.16 -2.47 14.67 44.97 0.66 -1.81 16 25 F -0.14 -4.18 13.59 44.97 0.61 -3.57 16 26 F -0.16 -3.34 17.30 44.97 0.78 -2.56 16 27 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.09 1.47 8.03 -2.39 -0.02 1.45 16 29 H 0.09 1.86 5.23 -2.39 -0.01 1.84 16 30 H 0.11 2.36 8.07 -2.39 -0.02 2.34 16 31 H 0.08 2.33 7.37 -2.39 -0.02 2.31 16 32 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.37 21.36 7.67 -92.71 -0.71 20.65 16 37 H 0.25 15.39 8.31 -92.71 -0.77 14.62 16 38 H 0.13 -0.04 8.14 -2.39 -0.02 -0.06 16 39 H 0.14 -0.04 8.14 -2.39 -0.02 -0.06 16 40 H 0.12 0.34 5.69 -2.39 -0.01 0.33 16 Total: -1.00 -76.32 350.13 5.56 -70.77 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: 0.40 Total: 17.13 kcal Atomic # 6 Polarization: 15.52 SS G_CDS: 6.58 Total: 22.10 kcal Atomic # 7 Polarization: -126.86 SS G_CDS: -5.45 Total: -132.31 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: -0.05 Total: -19.05 kcal Atomic # 9 Polarization: -9.98 SS G_CDS: 2.05 Total: -7.93 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 2.03 Total: 49.29 kcal Total: -76.32 5.56 -70.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699538499.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.969 kcal (2) G-P(sol) polarization free energy of solvation -76.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds