Wall clock time and date at job start Tue Mar 31 2020 18:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35475 * 116.99584 * 2 1 4 4 N 1.32422 * 119.11706 * 0.02562 * 3 2 1 5 5 C 1.32137 * 120.97351 * 180.02562 * 4 3 2 6 6 C 1.38804 * 119.21975 * 0.02562 * 5 4 3 7 7 C 1.39459 * 118.38770 * 359.97438 * 6 5 4 8 8 C 1.48463 * 120.51556 * 180.02562 * 7 6 5 9 9 O 1.21479 * 119.99929 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00531 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00454 * 179.97438 * 10 8 7 12 12 C 1.53513 * 114.17158 * 154.99995 * 11 10 8 13 13 N 1.47484 * 87.93060 * 87.81542 * 12 11 10 14 14 C 1.46895 * 110.99756 * 138.70311 * 13 12 11 15 15 C 1.50706 * 109.47182 * 170.00145 * 14 13 12 16 16 O 1.21297 * 119.99667 * 0.02562 * 15 14 13 17 17 N 1.34773 * 120.00081 * 179.72734 * 15 14 13 18 18 C 1.37095 * 119.99878 * 180.02562 * 17 15 14 19 19 H 1.08004 * 120.00160 * 359.97438 * 18 17 15 20 20 C 1.38950 * 120.00380 * 179.97438 * 18 17 15 21 21 N 1.31412 * 119.99401 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00554 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46783 * 60.00161 * 22 20 18 24 24 H 1.48496 * 109.47291 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.46865 * 300.00343 * 22 20 18 26 26 C 1.47477 * 87.83167 * 27.01125 * 13 12 11 27 27 N 1.32086 * 119.10888 * 180.30009 * 3 2 1 28 28 H 1.09000 * 109.47081 * 59.99749 * 1 2 3 29 29 H 1.08998 * 109.47295 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46894 * 300.00065 * 1 2 3 31 31 H 1.08000 * 120.38232 * 180.02562 * 5 4 3 32 32 H 1.07997 * 120.80022 * 179.97438 * 6 5 4 33 33 H 0.96999 * 119.99191 * 0.02562 * 10 8 7 34 34 H 1.09001 * 113.25341 * 22.05874 * 11 10 8 35 35 H 1.09005 * 113.47855 * 333.05418 * 12 11 10 36 36 H 1.08997 * 113.53455 * 202.58998 * 12 11 10 37 37 H 1.09001 * 109.47613 * 50.00491 * 14 13 12 38 38 H 1.08998 * 109.47678 * 290.00386 * 14 13 12 39 39 H 0.96998 * 120.00525 * 359.97438 * 17 15 14 40 40 H 0.97004 * 120.00112 * 179.97438 * 21 20 18 41 41 H 1.09000 * 113.48071 * 87.76093 * 26 13 12 42 42 H 1.09004 * 113.47566 * 218.21901 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0440 1.2071 0.0000 4 7 1.3057 2.3064 0.0005 5 6 1.8670 3.5026 0.0000 6 6 3.2515 3.6014 -0.0016 7 6 4.0002 2.4248 -0.0021 8 6 5.4839 2.4754 -0.0032 9 8 6.0551 3.5475 -0.0033 10 7 6.1973 1.3319 -0.0042 11 6 7.6614 1.3818 -0.0059 12 6 8.3336 0.1346 0.5850 13 7 8.2794 -0.4666 -0.7606 14 6 9.5236 -1.1850 -1.0667 15 6 9.3438 -1.9852 -2.3310 16 8 8.2834 -1.9592 -2.9194 17 7 10.3629 -2.7250 -2.8110 18 6 10.1994 -3.4525 -3.9614 19 1 9.2537 -3.4332 -4.4828 20 6 11.2502 -4.2148 -4.4567 21 7 12.4010 -4.2380 -3.8226 22 14 11.0272 -5.2067 -6.0239 23 1 10.6880 -4.2928 -7.1440 24 1 12.2871 -5.9277 -6.3368 25 1 9.9291 -6.1885 -5.8361 26 6 8.3095 0.9010 -1.3117 27 7 3.3639 1.2558 -0.0060 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.2556 4.3929 0.0009 32 1 3.7371 4.5660 -0.0024 33 1 5.7412 0.4758 -0.0046 34 1 8.0603 2.3241 0.3699 35 1 7.7165 -0.3852 1.3179 36 1 9.3484 0.3140 0.9399 37 1 9.7675 -1.8564 -0.2434 38 1 10.3333 -0.4680 -1.2026 39 1 11.2123 -2.7421 -2.3430 40 1 13.1345 -4.7704 -4.1681 41 1 9.3179 1.2860 -1.4635 42 1 7.6721 1.0309 -2.1864 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714940169.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:23 Heat of formation + Delta-G solvation = 4.450741 kcal Electronic energy + Delta-G solvation = -27550.174651 eV Core-core repulsion = 23340.373572 eV Total energy + Delta-G solvation = -4209.801079 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.77418 -40.62301 -39.29732 -38.39496 -37.66549 -34.64394 -33.98202 -33.65101 -31.91075 -31.22435 -29.84658 -27.94984 -26.29871 -25.92130 -25.30723 -24.27737 -23.48763 -21.59820 -19.91612 -19.33922 -19.05924 -18.55168 -17.86178 -17.22547 -16.83762 -16.33806 -16.03289 -15.90835 -15.50535 -15.25689 -15.01634 -14.90201 -14.63085 -14.48987 -14.12415 -14.06475 -13.70217 -13.27877 -13.09528 -12.67044 -12.41845 -12.07347 -11.77209 -11.64023 -11.57809 -11.46697 -11.29544 -11.17121 -11.01934 -10.74871 -10.64950 -10.41827 -10.17986 -9.70131 -9.50008 -9.45875 -9.19930 -8.80093 -8.17677 -7.92644 -6.38482 -3.79038 0.08650 0.56785 2.07734 2.41583 2.70630 3.22421 3.27500 3.32266 3.41345 3.50910 3.93513 3.97829 4.04589 4.18274 4.25258 4.39282 4.50931 4.78794 4.83396 4.84168 4.89094 5.02008 5.17434 5.19357 5.21373 5.36780 5.40376 5.52395 5.57903 5.66225 5.67104 5.72515 5.99835 6.13118 6.28004 6.35253 6.52179 6.67860 7.11158 7.26674 7.55691 7.58096 7.87179 8.09334 8.65878 9.21946 9.58278 10.11067 10.79414 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014616 B = 0.002211 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.185109 B =12660.616662 C =13972.828495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.285 6.285 3 C 0.502 3.498 4 N -0.555 5.555 5 C 0.189 3.811 6 C -0.211 4.211 7 C 0.175 3.825 8 C 0.575 3.425 9 O -0.524 6.524 10 N -0.673 5.673 11 C 0.112 3.888 12 C -0.013 4.013 13 N -0.439 5.439 14 C 0.008 3.992 15 C 0.446 3.554 16 O -0.574 6.574 17 N -0.568 5.568 18 C -0.298 4.298 19 H 0.102 0.898 20 C 0.021 3.979 21 N -0.904 5.904 22 Si 0.930 3.070 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.274 1.274 26 C -0.007 4.007 27 N -0.498 5.498 28 H 0.064 0.936 29 H 0.106 0.894 30 H 0.063 0.937 31 H 0.182 0.818 32 H 0.165 0.835 33 H 0.422 0.578 34 H 0.114 0.886 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.061 0.939 39 H 0.391 0.609 40 H 0.271 0.729 41 H 0.080 0.920 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.529 15.464 12.873 26.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.185 6.185 3 C 0.199 3.801 4 N -0.285 5.285 5 C 0.023 3.977 6 C -0.235 4.235 7 C 0.027 3.973 8 C 0.358 3.642 9 O -0.400 6.400 10 N -0.323 5.323 11 C 0.006 3.994 12 C -0.143 4.143 13 N -0.161 5.161 14 C -0.124 4.124 15 C 0.231 3.769 16 O -0.457 6.457 17 N -0.205 5.205 18 C -0.427 4.427 19 H 0.119 0.881 20 C -0.180 4.180 21 N -0.545 5.545 22 Si 0.757 3.243 23 H -0.200 1.200 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.138 4.138 27 N -0.227 5.227 28 H 0.083 0.917 29 H 0.124 0.876 30 H 0.082 0.918 31 H 0.199 0.801 32 H 0.183 0.817 33 H 0.260 0.740 34 H 0.132 0.868 35 H 0.110 0.890 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.079 0.921 39 H 0.224 0.776 40 H 0.081 0.919 41 H 0.098 0.902 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -18.541 14.366 12.220 26.447 hybrid contribution 1.241 0.241 -0.394 1.324 sum -17.300 14.607 11.826 25.544 Atomic orbital electron populations 1.23047 0.75348 1.03930 1.02825 1.86163 1.23558 1.22103 1.86700 1.20558 0.85590 0.85022 0.88942 1.68029 1.41613 0.99428 1.19438 1.23104 0.92212 0.94500 0.87931 1.22798 0.95574 1.01037 1.04052 1.21427 0.94846 0.88114 0.92926 1.17677 0.84638 0.84599 0.77292 1.90804 1.70103 1.29032 1.50011 1.45399 1.06158 1.09432 1.71302 1.22085 0.79780 0.99612 0.97917 1.24294 1.00785 0.94158 0.95045 1.68863 1.32649 1.11461 1.03158 1.22511 0.91798 0.98901 0.99218 1.19668 0.85522 0.84481 0.87194 1.90533 1.27119 1.67214 1.60834 1.41862 1.12878 1.41506 1.24249 1.19640 0.99937 1.22295 1.00842 0.88058 1.25245 0.94905 0.98253 0.99596 1.69604 1.02939 1.41672 1.40334 0.85924 0.77394 0.79583 0.81361 1.19952 1.20999 1.19912 1.24373 1.00955 0.89677 0.98746 1.67452 1.08452 1.29165 1.17590 0.91747 0.87557 0.91811 0.80084 0.81697 0.73963 0.86816 0.89049 0.89840 0.89271 0.92065 0.77567 0.91889 0.90191 0.89038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.36 101.05 1.05 1.35 16 2 O -0.28 -3.22 10.56 -18.12 -0.19 -3.42 16 3 C 0.50 5.93 8.48 -91.36 -0.77 5.15 16 4 N -0.56 -5.33 9.20 -14.74 -0.14 -5.47 16 5 C 0.19 1.35 11.30 -17.21 -0.19 1.15 16 6 C -0.21 -1.80 9.71 -38.92 -0.38 -2.18 16 7 C 0.18 2.02 6.79 -82.65 -0.56 1.46 16 8 C 0.57 7.30 7.83 -12.05 -0.09 7.21 16 9 O -0.52 -7.47 16.01 5.38 0.09 -7.38 16 10 N -0.67 -8.45 5.39 -54.29 -0.29 -8.74 16 11 C 0.11 1.34 4.59 -67.72 -0.31 1.03 16 12 C -0.01 -0.15 7.45 -7.55 -0.06 -0.21 16 13 N -0.44 -7.12 5.82 -246.13 -1.43 -8.55 16 14 C 0.01 0.14 5.30 -4.98 -0.03 0.11 16 15 C 0.45 10.76 7.85 -10.98 -0.09 10.67 16 16 O -0.57 -16.12 16.01 5.54 0.09 -16.03 16 17 N -0.57 -14.60 5.29 -10.96 -0.06 -14.66 16 18 C -0.30 -8.44 9.68 -14.93 -0.14 -8.59 16 19 H 0.10 3.02 7.16 -52.48 -0.38 2.65 16 20 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 21 N -0.90 -24.85 13.05 55.50 0.72 -24.12 16 22 Si 0.93 21.41 29.55 -169.99 -5.02 16.38 16 23 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 26 C -0.01 -0.11 7.53 -7.56 -0.06 -0.16 16 27 N -0.50 -6.36 9.73 -11.29 -0.11 -6.47 16 28 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 29 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.38 8.09 -51.93 -0.42 -0.04 16 31 H 0.18 0.51 8.06 -52.49 -0.42 0.08 16 32 H 0.17 1.13 7.73 -52.49 -0.41 0.73 16 33 H 0.42 5.54 8.15 -40.82 -0.33 5.21 16 34 H 0.11 1.25 7.45 -51.93 -0.39 0.87 16 35 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.08 0.79 7.91 -51.93 -0.41 0.38 16 37 H 0.09 1.40 8.08 -51.93 -0.42 0.98 16 38 H 0.06 0.94 7.30 -51.93 -0.38 0.56 16 39 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 40 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 41 H 0.08 1.04 7.42 -51.93 -0.39 0.66 16 42 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 LS Contribution 370.35 15.07 5.58 5.58 Total: -1.00 -35.74 370.35 -7.58 -43.32 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -5.08 Total: 12.08 kcal Atomic # 6 Polarization: 19.21 SS G_CDS: -1.73 Total: 17.48 kcal Atomic # 7 Polarization: -66.71 SS G_CDS: -1.30 Total: -68.02 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -0.02 Total: -26.83 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.74 -7.58 -43.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714940169.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.771 kcal (2) G-P(sol) polarization free energy of solvation -35.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds