Wall clock time and date at job start Tue Mar 31 2020 18:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35475 * 116.99584 * 2 1 4 4 N 1.32422 * 119.11706 * 0.02562 * 3 2 1 5 5 C 1.32137 * 120.97351 * 180.02562 * 4 3 2 6 6 C 1.38804 * 119.21975 * 0.02562 * 5 4 3 7 7 C 1.39459 * 118.38770 * 359.97438 * 6 5 4 8 8 C 1.48463 * 120.51556 * 180.02562 * 7 6 5 9 9 O 1.21479 * 119.99929 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00531 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00454 * 179.97438 * 10 8 7 12 12 C 1.53513 * 114.17158 * 154.99995 * 11 10 8 13 13 N 1.47484 * 87.93060 * 87.81542 * 12 11 10 14 14 C 1.46895 * 110.99756 * 138.70311 * 13 12 11 15 15 C 1.50706 * 109.47182 * 170.00145 * 14 13 12 16 16 O 1.21297 * 119.99667 * 0.02562 * 15 14 13 17 17 N 1.34773 * 120.00081 * 179.72734 * 15 14 13 18 18 C 1.37095 * 119.99878 * 180.02562 * 17 15 14 19 19 H 1.08004 * 120.00160 * 359.97438 * 18 17 15 20 20 C 1.38950 * 120.00380 * 179.97438 * 18 17 15 21 21 N 1.31412 * 119.99401 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00554 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46783 * 60.00161 * 22 20 18 24 24 H 1.48496 * 109.47291 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.46865 * 300.00343 * 22 20 18 26 26 C 1.47477 * 87.83167 * 27.01125 * 13 12 11 27 27 N 1.32086 * 119.10888 * 180.30009 * 3 2 1 28 28 H 1.09000 * 109.47081 * 59.99749 * 1 2 3 29 29 H 1.08998 * 109.47295 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46894 * 300.00065 * 1 2 3 31 31 H 1.08000 * 120.38232 * 180.02562 * 5 4 3 32 32 H 1.07997 * 120.80022 * 179.97438 * 6 5 4 33 33 H 0.96999 * 119.99191 * 0.02562 * 10 8 7 34 34 H 1.09001 * 113.25341 * 22.05874 * 11 10 8 35 35 H 1.09005 * 113.47855 * 333.05418 * 12 11 10 36 36 H 1.08997 * 113.53455 * 202.58998 * 12 11 10 37 37 H 1.09001 * 109.47613 * 50.00491 * 14 13 12 38 38 H 1.08998 * 109.47678 * 290.00386 * 14 13 12 39 39 H 0.96998 * 120.00525 * 359.97438 * 17 15 14 40 40 H 0.97004 * 120.00112 * 179.97438 * 21 20 18 41 41 H 1.09000 * 113.48071 * 87.76093 * 26 13 12 42 42 H 1.09004 * 113.47566 * 218.21901 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0440 1.2071 0.0000 4 7 1.3057 2.3064 0.0005 5 6 1.8670 3.5026 0.0000 6 6 3.2515 3.6014 -0.0016 7 6 4.0002 2.4248 -0.0021 8 6 5.4839 2.4754 -0.0032 9 8 6.0551 3.5475 -0.0033 10 7 6.1973 1.3319 -0.0042 11 6 7.6614 1.3818 -0.0059 12 6 8.3336 0.1346 0.5850 13 7 8.2794 -0.4666 -0.7606 14 6 9.5236 -1.1850 -1.0667 15 6 9.3438 -1.9852 -2.3310 16 8 8.2834 -1.9592 -2.9194 17 7 10.3629 -2.7250 -2.8110 18 6 10.1994 -3.4525 -3.9614 19 1 9.2537 -3.4332 -4.4828 20 6 11.2502 -4.2148 -4.4567 21 7 12.4010 -4.2380 -3.8226 22 14 11.0272 -5.2067 -6.0239 23 1 10.6880 -4.2928 -7.1440 24 1 12.2871 -5.9277 -6.3368 25 1 9.9291 -6.1885 -5.8361 26 6 8.3095 0.9010 -1.3117 27 7 3.3639 1.2558 -0.0060 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.2556 4.3929 0.0009 32 1 3.7371 4.5660 -0.0024 33 1 5.7412 0.4758 -0.0046 34 1 8.0603 2.3241 0.3699 35 1 7.7165 -0.3852 1.3179 36 1 9.3484 0.3140 0.9399 37 1 9.7675 -1.8564 -0.2434 38 1 10.3333 -0.4680 -1.2026 39 1 11.2123 -2.7421 -2.3430 40 1 13.1345 -4.7704 -4.1681 41 1 9.3179 1.2860 -1.4635 42 1 7.6721 1.0309 -2.1864 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714940169.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:22 Heat of formation + Delta-G solvation = -29.062797 kcal Electronic energy + Delta-G solvation = -27551.627907 eV Core-core repulsion = 23340.373572 eV Total energy + Delta-G solvation = -4211.254335 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.54704 -41.69178 -40.38085 -39.55939 -39.09792 -35.96756 -35.49312 -34.71963 -33.27781 -32.64369 -31.17234 -28.56348 -27.59832 -26.96421 -26.62570 -25.28191 -24.71980 -22.48837 -21.24798 -20.76312 -20.04558 -19.85609 -19.33220 -18.06590 -17.77872 -17.58728 -17.31705 -16.82638 -16.59755 -16.54790 -16.35646 -16.08110 -15.67205 -15.60774 -15.44294 -14.97771 -14.90039 -14.72362 -14.46687 -13.74113 -13.67469 -13.48941 -13.00544 -12.96725 -12.62901 -12.46936 -12.40155 -12.36360 -12.33145 -12.12453 -12.07337 -11.86084 -11.67916 -11.49921 -10.48693 -10.38592 -10.28316 -10.14514 -10.01030 -9.71788 -8.46926 -5.95463 -0.70342 -0.11862 1.37063 1.38503 1.39828 1.50394 1.50907 1.82506 2.07069 2.28237 2.63247 2.81387 2.86397 3.19177 3.20663 3.31721 3.48587 3.54423 3.76939 3.82546 4.16278 4.16857 4.29855 4.36301 4.38992 4.40894 4.44763 4.53111 4.55876 4.64027 4.70284 4.74620 4.79648 4.96745 5.30128 5.34462 5.40002 5.45347 5.86375 5.99728 6.06760 6.28748 6.61383 6.76237 6.91229 7.13406 7.57401 8.14728 8.70311 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014616 B = 0.002211 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.185109 B =12660.616662 C =13972.828495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.310 6.310 3 C 0.485 3.515 4 N -0.554 5.554 5 C 0.202 3.798 6 C -0.200 4.200 7 C 0.149 3.851 8 C 0.576 3.424 9 O -0.543 6.543 10 N -0.676 5.676 11 C 0.122 3.878 12 C 0.001 3.999 13 N -0.476 5.476 14 C 0.022 3.978 15 C 0.440 3.560 16 O -0.621 6.621 17 N -0.576 5.576 18 C -0.334 4.334 19 H 0.074 0.926 20 C -0.013 4.013 21 N -0.920 5.920 22 Si 0.991 3.009 23 H -0.273 1.273 24 H -0.268 1.268 25 H -0.273 1.273 26 C -0.012 4.012 27 N -0.529 5.529 28 H 0.066 0.934 29 H 0.126 0.874 30 H 0.071 0.929 31 H 0.232 0.768 32 H 0.184 0.816 33 H 0.418 0.582 34 H 0.131 0.869 35 H 0.100 0.900 36 H 0.116 0.884 37 H 0.113 0.887 38 H 0.089 0.911 39 H 0.397 0.603 40 H 0.278 0.722 41 H 0.098 0.902 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.741 16.712 13.940 28.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.211 6.211 3 C 0.182 3.818 4 N -0.284 5.284 5 C 0.035 3.965 6 C -0.223 4.223 7 C 0.003 3.997 8 C 0.360 3.640 9 O -0.420 6.420 10 N -0.325 5.325 11 C 0.016 3.984 12 C -0.127 4.127 13 N -0.199 5.199 14 C -0.110 4.110 15 C 0.228 3.772 16 O -0.507 6.507 17 N -0.214 5.214 18 C -0.464 4.464 19 H 0.092 0.908 20 C -0.212 4.212 21 N -0.561 5.561 22 Si 0.815 3.185 23 H -0.198 1.198 24 H -0.192 1.192 25 H -0.198 1.198 26 C -0.143 4.143 27 N -0.258 5.258 28 H 0.085 0.915 29 H 0.144 0.856 30 H 0.090 0.910 31 H 0.248 0.752 32 H 0.202 0.798 33 H 0.255 0.745 34 H 0.148 0.852 35 H 0.118 0.882 36 H 0.134 0.866 37 H 0.131 0.869 38 H 0.107 0.893 39 H 0.231 0.769 40 H 0.087 0.913 41 H 0.116 0.884 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -18.728 15.616 13.317 27.784 hybrid contribution 1.214 -0.083 -0.713 1.410 sum -17.514 15.533 12.604 26.588 Atomic orbital electron populations 1.23296 0.73394 1.05468 1.03298 1.86124 1.25621 1.22581 1.86797 1.20738 0.85569 0.85777 0.89726 1.68145 1.41296 0.99698 1.19292 1.23961 0.92116 0.95080 0.85334 1.23101 0.96192 1.00684 1.02353 1.21403 0.94319 0.89052 0.94917 1.17891 0.85339 0.84230 0.76553 1.90777 1.70712 1.29422 1.51085 1.45487 1.06554 1.09328 1.71158 1.22070 0.79450 1.00617 0.96237 1.24352 1.02623 0.92919 0.92843 1.68810 1.32298 1.12523 1.06229 1.22403 0.93450 0.99152 0.95991 1.20895 0.84165 0.83613 0.88558 1.90498 1.28891 1.68545 1.62781 1.41937 1.13613 1.41907 1.23946 1.19582 0.99615 1.24581 1.02581 0.90754 1.26009 0.94347 0.98549 1.02332 1.69658 1.03278 1.41811 1.41328 0.85019 0.77876 0.78082 0.77541 1.19836 1.19235 1.19836 1.24439 1.01644 0.89516 0.98661 1.67317 1.09391 1.30176 1.18965 0.91489 0.85581 0.91002 0.75163 0.79830 0.74486 0.85181 0.88209 0.86619 0.86933 0.89304 0.76936 0.91282 0.88400 0.92443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.36 113.37 1.17 1.70 16 2 O -0.31 -7.17 10.56 -87.75 -0.93 -8.09 16 3 C 0.48 11.50 8.48 180.61 1.53 13.03 16 4 N -0.55 -9.88 9.20 -313.43 -2.88 -12.77 16 5 C 0.20 2.34 11.30 84.78 0.96 3.30 16 6 C -0.20 -3.08 9.71 22.70 0.22 -2.86 16 7 C 0.15 3.43 6.79 41.98 0.29 3.72 16 8 C 0.58 14.64 7.83 86.97 0.68 15.32 16 9 O -0.54 -15.16 16.01 -3.65 -0.06 -15.22 16 10 N -0.68 -17.10 5.39 -444.00 -2.39 -19.49 16 11 C 0.12 2.79 4.59 45.44 0.21 3.00 16 12 C 0.00 0.03 7.45 83.57 0.62 0.65 16 13 N -0.48 -15.10 5.82 -932.63 -5.43 -20.53 16 14 C 0.02 0.73 5.30 85.56 0.45 1.18 16 15 C 0.44 21.60 7.85 87.66 0.69 22.29 16 16 O -0.62 -36.28 16.01 -3.08 -0.05 -36.33 16 17 N -0.58 -30.20 5.29 -306.98 -1.62 -31.82 16 18 C -0.33 -19.48 9.68 84.04 0.81 -18.66 16 19 H 0.07 4.65 7.16 -2.91 -0.02 4.63 16 20 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 21 N -0.92 -50.19 13.05 21.66 0.28 -49.90 16 22 Si 0.99 43.88 29.55 68.60 2.03 45.90 16 23 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 24 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 25 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 26 C -0.01 -0.36 7.53 83.57 0.63 0.27 16 27 N -0.53 -13.85 9.73 -302.69 -2.94 -16.80 16 28 H 0.07 0.83 8.09 -2.39 -0.02 0.81 16 29 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.07 0.81 8.09 -2.39 -0.02 0.79 16 31 H 0.23 0.23 8.06 -2.91 -0.02 0.21 16 32 H 0.18 2.08 7.73 -2.91 -0.02 2.06 16 33 H 0.42 11.36 8.15 -92.71 -0.76 10.61 16 34 H 0.13 2.60 7.45 -2.39 -0.02 2.58 16 35 H 0.10 1.95 8.14 -2.38 -0.02 1.93 16 36 H 0.12 1.73 7.91 -2.39 -0.02 1.71 16 37 H 0.11 3.27 8.08 -2.39 -0.02 3.25 16 38 H 0.09 2.51 7.30 -2.39 -0.02 2.50 16 39 H 0.40 19.49 7.90 -92.71 -0.73 18.76 16 40 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 41 H 0.10 2.41 7.42 -2.39 -0.02 2.40 16 42 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 Total: -1.00 -80.90 370.35 -5.65 -86.55 By element: Atomic # 1 Polarization: 36.16 SS G_CDS: -0.39 Total: 35.77 kcal Atomic # 6 Polarization: 34.00 SS G_CDS: 8.73 Total: 42.73 kcal Atomic # 7 Polarization: -136.32 SS G_CDS: -14.99 Total: -151.31 kcal Atomic # 8 Polarization: -58.61 SS G_CDS: -1.03 Total: -59.64 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -80.90 -5.65 -86.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714940169.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.489 kcal (2) G-P(sol) polarization free energy of solvation -80.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds