Wall clock time and date at job start Tue Mar 31 2020 18:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28390 * 119.09751 * 2 1 4 4 C 1.31401 * 122.26646 * 180.02562 * 3 2 1 5 5 C 1.47887 * 119.89607 * 180.27451 * 4 3 2 6 6 O 1.21553 * 120.00473 * 179.72355 * 5 4 3 7 7 N 1.34778 * 119.99842 * 359.72606 * 5 4 3 8 8 C 1.46503 * 119.99972 * 179.97438 * 7 5 4 9 9 C 1.53923 * 113.73211 * 253.76499 * 8 7 5 10 10 N 1.48188 * 86.10148 * 221.95734 * 9 8 7 11 11 C 1.46907 * 111.07175 * 137.52107 * 10 9 8 12 12 C 1.50695 * 109.47025 * 70.56907 * 11 10 9 13 13 O 1.21296 * 120.00244 * 0.02562 * 12 11 10 14 14 N 1.34779 * 120.00273 * 179.97438 * 12 11 10 15 15 C 1.37095 * 120.00275 * 179.97438 * 14 12 11 16 16 H 1.07999 * 120.00143 * 0.02562 * 15 14 12 17 17 C 1.38952 * 119.99995 * 180.02562 * 15 14 12 18 18 N 1.31413 * 119.99962 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 119.99768 * 0.02562 * 17 15 14 20 20 H 1.48506 * 109.47015 * 89.99933 * 19 17 15 21 21 H 1.48498 * 109.47052 * 209.99571 * 19 17 15 22 22 H 1.48498 * 109.47321 * 329.99918 * 19 17 15 23 23 C 1.47962 * 90.79776 * 24.60264 * 10 9 8 24 24 C 1.41585 * 120.21220 * 359.97438 * 4 3 2 25 25 C 1.36326 * 118.23843 * 0.02562 * 24 4 3 26 26 C 1.34606 * 119.10310 * 180.02562 * 2 1 3 27 27 O 1.21977 * 120.22468 * 359.96247 * 26 2 1 28 28 H 1.08995 * 109.47478 * 269.97632 * 1 2 3 29 29 H 1.09003 * 109.47295 * 29.98139 * 1 2 3 30 30 H 1.08999 * 109.46830 * 149.98092 * 1 2 3 31 31 H 0.97003 * 119.99746 * 359.97438 * 7 5 4 32 32 H 1.08999 * 112.93490 * 25.33541 * 8 7 5 33 33 H 1.09006 * 113.76500 * 336.23790 * 9 8 7 34 34 H 1.09000 * 113.75897 * 107.60500 * 9 8 7 35 35 H 1.08997 * 109.46979 * 190.56895 * 11 10 9 36 36 H 1.08997 * 109.47296 * 310.57064 * 11 10 9 37 37 H 0.96995 * 119.99455 * 0.02562 * 14 12 11 38 38 H 0.96999 * 119.99764 * 180.02562 * 18 17 15 39 39 H 1.09000 * 113.75845 * 221.08292 * 23 10 9 40 40 H 1.08996 * 113.85808 * 89.72939 * 23 10 9 41 41 H 1.08001 * 120.87601 * 179.97438 * 24 4 3 42 42 H 1.07992 * 121.03470 * 180.02562 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.0893 1.1219 0.0000 4 6 3.4013 1.1945 -0.0005 5 6 4.0664 2.5153 0.0057 6 8 5.2800 2.5848 0.0103 7 7 3.3270 3.6422 0.0062 8 6 3.9858 4.9507 0.0129 9 6 3.9072 5.6770 1.3677 10 7 3.6306 6.9017 0.5807 11 6 2.5598 7.6957 1.1980 12 6 3.0664 8.3155 2.4748 13 8 4.2074 8.1159 2.8349 14 7 2.2521 9.0925 3.2162 15 6 2.7128 9.6559 4.3780 16 1 3.7284 9.4775 4.6990 17 6 1.8730 10.4565 5.1426 18 7 2.3145 10.9961 6.2565 19 14 0.1161 10.7645 4.5877 20 1 -0.7728 9.7192 5.1556 21 1 -0.3256 12.1007 5.0615 22 1 0.0500 10.7183 3.1049 23 6 3.1089 6.0886 -0.5401 24 6 4.1803 0.0122 -0.0005 25 6 3.5323 -1.1872 -0.0005 26 6 2.1197 -1.1761 -0.0005 27 8 1.4974 -2.2252 -0.0003 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3633 -0.8898 -0.5141 31 1 2.3586 3.5867 0.0022 32 1 4.9889 4.9233 -0.4127 33 1 3.0714 5.3567 1.9899 34 1 4.8541 5.7045 1.9068 35 1 2.2485 8.4824 0.5108 36 1 1.7103 7.0499 1.4198 37 1 1.3398 9.2524 2.9281 38 1 1.7281 11.5547 6.7904 39 1 3.4193 6.4445 -1.5225 40 1 2.0393 5.8882 -0.4788 41 1 5.2593 0.0594 -0.0013 42 1 4.0818 -2.1169 -0.0001 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714951678.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:05 Heat of formation + Delta-G solvation = -14.575566 kcal Electronic energy + Delta-G solvation = -27698.746323 eV Core-core repulsion = 23488.120201 eV Total energy + Delta-G solvation = -4210.626121 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.28259 -41.62960 -40.46933 -39.48587 -38.88788 -36.04397 -35.97981 -35.23420 -33.75927 -32.77696 -31.15957 -29.46631 -27.47328 -27.07822 -26.45824 -25.10976 -24.51535 -22.52081 -21.35005 -21.21076 -20.24097 -19.82540 -19.11690 -17.97288 -17.92173 -17.83611 -17.61086 -17.15281 -16.74516 -16.57893 -16.29451 -15.90353 -15.57440 -15.27075 -14.95625 -14.84463 -14.61313 -14.57590 -14.41750 -14.01741 -13.71261 -13.68507 -13.57129 -13.51878 -13.17966 -12.89967 -12.82713 -12.41333 -12.39099 -11.97171 -11.78310 -11.55366 -11.51887 -11.49503 -11.03829 -10.41693 -10.26396 -10.22872 -9.78183 -9.71406 -8.40682 -6.01951 -0.72901 -0.08128 0.96098 1.30580 1.36395 1.45812 1.57870 1.82581 1.96971 2.24014 2.34914 2.65367 2.78074 3.10102 3.15851 3.51035 3.53451 3.57235 3.67990 3.82124 4.10780 4.21134 4.29500 4.34461 4.36866 4.42797 4.48110 4.52052 4.52948 4.69591 4.71723 4.80524 4.87736 4.90503 4.98594 5.33195 5.36902 5.54026 5.89931 6.00545 6.23478 6.36222 6.59992 6.74588 6.89151 6.99490 7.40305 7.98380 8.77169 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016449 B = 0.002181 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.805594 B =12837.941794 C =13680.622483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.333 5.333 3 N -0.170 5.170 4 C 0.013 3.987 5 C 0.592 3.408 6 O -0.553 6.553 7 N -0.688 5.688 8 C 0.128 3.872 9 C 0.001 3.999 10 N -0.483 5.483 11 C 0.023 3.977 12 C 0.448 3.552 13 O -0.612 6.612 14 N -0.591 5.591 15 C -0.328 4.328 16 H 0.052 0.948 17 C -0.018 4.018 18 N -0.936 5.936 19 Si 0.968 3.032 20 H -0.256 1.256 21 H -0.277 1.277 22 H -0.228 1.228 23 C 0.013 3.987 24 C -0.027 4.027 25 C -0.189 4.189 26 C 0.469 3.531 27 O -0.559 6.559 28 H 0.096 0.904 29 H 0.125 0.875 30 H 0.101 0.899 31 H 0.421 0.579 32 H 0.115 0.885 33 H 0.076 0.924 34 H 0.060 0.940 35 H 0.125 0.875 36 H 0.095 0.905 37 H 0.390 0.610 38 H 0.279 0.721 39 H 0.118 0.882 40 H 0.109 0.891 41 H 0.178 0.822 42 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.580 -21.514 -20.138 30.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.155 5.155 3 N -0.002 5.002 4 C -0.158 4.158 5 C 0.376 3.624 6 O -0.429 6.429 7 N -0.340 5.340 8 C 0.023 3.977 9 C -0.129 4.129 10 N -0.206 5.206 11 C -0.109 4.109 12 C 0.236 3.764 13 O -0.496 6.496 14 N -0.234 5.234 15 C -0.457 4.457 16 H 0.070 0.930 17 C -0.217 4.217 18 N -0.577 5.577 19 Si 0.787 3.213 20 H -0.180 1.180 21 H -0.202 1.202 22 H -0.151 1.151 23 C -0.116 4.116 24 C -0.050 4.050 25 C -0.218 4.218 26 C 0.270 3.730 27 O -0.440 6.440 28 H 0.114 0.886 29 H 0.143 0.857 30 H 0.119 0.881 31 H 0.260 0.740 32 H 0.133 0.867 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.143 0.857 36 H 0.113 0.887 37 H 0.226 0.774 38 H 0.088 0.912 39 H 0.137 0.863 40 H 0.127 0.873 41 H 0.195 0.805 42 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -8.631 -21.063 -19.830 30.189 hybrid contribution -0.933 -0.465 0.976 1.428 sum -9.564 -21.529 -18.855 30.174 Atomic orbital electron populations 1.22588 0.71468 1.07033 1.06073 1.46971 1.11120 1.02160 1.55241 1.71019 1.10867 1.12556 1.05750 1.21622 0.88629 0.95899 1.09632 1.17385 0.86048 0.82910 0.76057 1.90856 1.14118 1.86761 1.51142 1.45753 1.11172 1.04302 1.72734 1.22924 0.99044 0.80288 0.95491 1.24327 1.02017 0.89801 0.96787 1.68402 1.32206 1.13568 1.06461 1.22469 0.94412 1.00415 0.93594 1.20977 0.86075 0.82214 0.87185 1.90566 1.21061 1.64338 1.73625 1.42029 1.13804 1.45894 1.21632 1.18978 0.99243 1.28225 0.99286 0.93016 1.26177 1.04703 0.95533 0.95253 1.69817 1.39198 1.33337 1.15365 0.85331 0.76327 0.78900 0.80728 1.18033 1.20234 1.15081 1.24505 0.99841 0.89861 0.97374 1.22366 1.03846 0.89684 0.89119 1.22872 0.91830 1.01430 1.05707 1.18463 0.90938 0.83906 0.79727 1.90972 1.69980 1.30453 1.52569 0.88567 0.85691 0.88052 0.74010 0.86698 0.90633 0.92181 0.85711 0.88678 0.77391 0.91185 0.86340 0.87307 0.80475 0.79401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.48 10.58 127.77 1.35 1.83 16 2 N -0.33 -4.53 3.62 -494.07 -1.79 -6.32 16 3 N -0.17 -2.22 10.10 -48.19 -0.49 -2.71 16 4 C 0.01 0.19 6.84 42.59 0.29 0.48 16 5 C 0.59 11.14 7.81 86.80 0.68 11.82 16 6 O -0.55 -14.30 16.00 -3.88 -0.06 -14.37 16 7 N -0.69 -10.46 5.36 -449.01 -2.41 -12.86 16 8 C 0.13 2.50 4.39 46.56 0.20 2.70 16 9 C 0.00 0.02 6.58 86.36 0.57 0.59 16 10 N -0.48 -13.13 5.95 -912.32 -5.42 -18.56 16 11 C 0.02 0.62 5.31 85.55 0.45 1.08 16 12 C 0.45 19.68 7.59 87.66 0.67 20.34 16 13 O -0.61 -33.88 15.13 -3.08 -0.05 -33.93 16 14 N -0.59 -27.18 5.09 -306.98 -1.56 -28.74 16 15 C -0.33 -19.10 10.16 84.04 0.85 -18.24 16 16 H 0.05 3.63 7.39 -2.91 -0.02 3.60 16 17 C -0.02 -1.01 5.50 84.93 0.47 -0.54 16 18 N -0.94 -56.40 13.96 21.66 0.30 -56.10 16 19 Si 0.97 37.75 27.74 68.60 1.90 39.66 16 20 H -0.26 -9.37 7.11 99.48 0.71 -8.67 16 21 H -0.28 -10.85 7.11 99.48 0.71 -10.14 16 22 H -0.23 -7.30 6.52 99.48 0.65 -6.65 16 23 C 0.01 0.19 7.73 86.41 0.67 0.86 16 24 C -0.03 -0.35 9.68 22.65 0.22 -0.13 16 25 C -0.19 -2.51 10.11 22.57 0.23 -2.29 16 26 C 0.47 8.28 7.47 85.01 0.63 8.92 16 27 O -0.56 -13.27 16.62 -5.24 -0.09 -13.36 16 28 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.12 0.24 8.14 -2.39 -0.02 0.22 16 30 H 0.10 0.81 7.36 -2.39 -0.02 0.79 16 31 H 0.42 4.13 8.05 -92.71 -0.75 3.39 16 32 H 0.12 2.63 7.50 -2.39 -0.02 2.61 16 33 H 0.08 1.99 7.79 -2.38 -0.02 1.97 16 34 H 0.06 2.17 8.10 -2.39 -0.02 2.15 16 35 H 0.13 2.75 8.14 -2.39 -0.02 2.73 16 36 H 0.10 1.91 7.70 -2.39 -0.02 1.90 16 37 H 0.39 14.49 5.76 -92.71 -0.53 13.96 16 38 H 0.28 15.31 8.31 -92.71 -0.77 14.54 16 39 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.11 0.93 7.76 -2.39 -0.02 0.92 16 41 H 0.18 1.87 7.72 -2.91 -0.02 1.85 16 42 H 0.19 1.68 8.06 -2.91 -0.02 1.66 16 Total: -1.00 -88.47 364.09 -2.62 -91.09 By element: Atomic # 1 Polarization: 29.02 SS G_CDS: -0.24 Total: 28.78 kcal Atomic # 6 Polarization: 20.14 SS G_CDS: 7.28 Total: 27.42 kcal Atomic # 7 Polarization: -113.92 SS G_CDS: -11.37 Total: -125.29 kcal Atomic # 8 Polarization: -61.46 SS G_CDS: -0.20 Total: -61.65 kcal Atomic # 14 Polarization: 37.75 SS G_CDS: 1.90 Total: 39.66 kcal Total: -88.47 -2.62 -91.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714951678.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.510 kcal (2) G-P(sol) polarization free energy of solvation -88.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds