Wall clock time and date at job start Tue Mar 31 2020 18:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46499 * 109.47020 * 2 1 4 4 C 1.46503 * 119.99569 * 269.99454 * 3 2 1 5 5 C 1.52997 * 109.47445 * 269.99954 * 4 3 2 6 6 N 1.46494 * 109.47444 * 179.97438 * 5 4 3 7 7 C 1.36938 * 120.00220 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99909 * 0.02562 * 7 6 5 9 9 C 1.38815 * 119.99972 * 180.02562 * 7 6 5 10 10 N 1.31624 * 119.99768 * 180.02562 * 9 7 6 11 11 Si 1.86791 * 120.00019 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47493 * 90.00020 * 11 9 7 13 13 H 1.48512 * 109.46892 * 209.99822 * 11 9 7 14 14 H 1.48497 * 109.47228 * 329.99427 * 11 9 7 15 15 C 1.34770 * 120.00517 * 89.99625 * 3 2 1 16 16 O 1.21282 * 120.00244 * 179.97438 * 15 3 2 17 17 C 1.50700 * 119.99994 * 0.02562 * 15 3 2 18 18 C 1.50698 * 109.47293 * 179.97438 * 17 15 3 19 19 N 1.29738 * 126.28997 * 269.95672 * 18 17 15 20 20 O 1.41353 * 109.74033 * 180.02562 * 19 18 17 21 21 C 1.34898 * 109.32273 * 359.97438 * 20 19 18 22 22 C 1.38965 * 133.32641 * 179.97438 * 21 20 19 23 23 C 1.37758 * 119.96602 * 180.02562 * 22 21 20 24 24 C 1.38998 * 120.58412 * 359.97438 * 23 22 21 25 25 F 1.35099 * 119.84111 * 180.02562 * 24 23 22 26 26 C 1.37799 * 120.31738 * 0.02562 * 24 23 22 27 27 C 1.39724 * 119.65576 * 359.97438 * 26 24 23 28 28 H 1.09000 * 109.47216 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47138 * 300.00736 * 1 2 3 30 30 H 1.09002 * 109.46554 * 60.00205 * 1 2 3 31 31 H 1.08997 * 109.47649 * 239.99194 * 2 1 3 32 32 H 1.09008 * 109.46654 * 119.99096 * 2 1 3 33 33 H 1.09000 * 109.47170 * 30.00465 * 4 3 2 34 34 H 1.09008 * 109.46991 * 150.00363 * 4 3 2 35 35 H 1.09000 * 109.47353 * 300.00398 * 5 4 3 36 36 H 1.09008 * 109.47057 * 59.99828 * 5 4 3 37 37 H 0.96996 * 120.00073 * 0.02562 * 6 5 4 38 38 H 0.96994 * 119.99955 * 180.02562 * 10 9 7 39 39 H 1.08997 * 109.47244 * 59.99691 * 17 15 3 40 40 H 1.09007 * 109.46998 * 299.99896 * 17 15 3 41 41 H 1.07996 * 120.01341 * 359.74254 * 22 21 20 42 42 H 1.07999 * 119.70557 * 179.97438 * 23 22 21 43 43 H 1.07995 * 120.17371 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.7076 1.8313 -1.7104 6 7 3.9516 2.5213 -2.9795 7 6 5.1840 2.4491 -3.5722 8 1 5.9759 1.8831 -3.1042 9 6 5.4154 3.1033 -4.7744 10 7 6.5998 3.0335 -5.3443 11 14 4.0459 4.0828 -5.5833 12 1 4.0871 5.4855 -5.0979 13 1 4.2275 4.0635 -7.0572 14 1 2.7343 3.4778 -5.2384 15 6 2.2429 2.0167 1.1671 16 8 2.6476 3.1600 1.1670 17 6 1.9923 1.3062 2.4722 18 6 2.3191 2.2294 3.6176 19 7 3.4714 2.3507 4.2014 20 8 3.3856 3.3148 5.2315 21 6 2.1297 3.8047 5.2809 22 6 1.5069 4.7526 6.0838 23 6 0.1755 5.0496 5.8913 24 6 -0.5555 4.4090 4.8977 25 9 -1.8602 4.7123 4.7217 26 6 0.0442 3.4662 4.0912 27 6 1.3939 3.1560 4.2763 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 1.8935 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8902 33 1 1.5818 1.6876 -2.0285 34 1 2.0956 3.1410 -1.1385 35 1 4.3884 2.2155 -0.9508 36 1 3.8746 0.7620 -1.8406 37 1 3.2405 3.0299 -3.3996 38 1 6.7615 3.4909 -6.1842 39 1 2.6228 0.4190 2.5299 40 1 0.9444 1.0116 2.5302 41 1 2.0651 5.2528 6.8613 42 1 -0.3044 5.7867 6.5180 43 1 -0.5259 2.9702 3.3197 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716244941.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:50 Heat of formation + Delta-G solvation = 5.913424 kcal Electronic energy + Delta-G solvation = -28144.977181 eV Core-core repulsion = 23915.319567 eV Total energy + Delta-G solvation = -4229.657614 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.31386 -42.19972 -40.12420 -37.88754 -36.52458 -35.06657 -34.71455 -31.98363 -31.24137 -30.64710 -30.34137 -29.91377 -27.70787 -24.17252 -23.81814 -23.61066 -23.14600 -21.67665 -20.97020 -19.19024 -18.65133 -17.82597 -17.64697 -17.38096 -17.03582 -16.39375 -16.30793 -15.80722 -15.69772 -15.25114 -14.69713 -14.52384 -14.17436 -14.10120 -14.02290 -13.95268 -13.66837 -13.49944 -13.33762 -13.05577 -12.65469 -12.58602 -12.30255 -12.19628 -11.93401 -11.65371 -11.57369 -11.47342 -11.37739 -11.17703 -11.09659 -10.76186 -10.18269 -9.98034 -9.60266 -9.51997 -8.90263 -8.89184 -8.75779 -7.25357 -5.76379 -3.12968 0.05907 0.59881 1.52745 2.05951 2.42797 2.76910 2.96851 3.36895 3.41150 3.42946 3.45824 3.62037 3.87645 4.00171 4.18982 4.37829 4.55538 4.59371 4.60334 4.68677 4.74314 4.88462 4.91396 5.09488 5.14505 5.30208 5.33581 5.38817 5.43292 5.45701 5.48452 5.55583 5.57186 5.58721 5.70351 5.86323 5.91127 6.10431 6.33276 6.58001 6.75791 6.81028 7.23662 7.96746 8.01598 8.41770 9.19987 9.92020 10.10892 11.41945 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013807 B = 0.002566 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.410493 B =10907.920837 C =11104.423870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.097 3.903 3 N -0.603 5.603 4 C 0.105 3.895 5 C 0.146 3.854 6 N -0.753 5.753 7 C -0.244 4.244 8 H 0.090 0.910 9 C 0.004 3.996 10 N -0.934 5.934 11 Si 0.886 3.114 12 H -0.283 1.283 13 H -0.290 1.290 14 H -0.277 1.277 15 C 0.517 3.483 16 O -0.520 6.520 17 C -0.076 4.076 18 C 0.154 3.846 19 N -0.261 5.261 20 O -0.083 6.083 21 C 0.077 3.923 22 C -0.093 4.093 23 C -0.095 4.095 24 C 0.071 3.929 25 F -0.133 7.133 26 C -0.073 4.073 27 C -0.157 4.157 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.031 0.969 36 H 0.027 0.973 37 H 0.361 0.639 38 H 0.260 0.740 39 H 0.126 0.874 40 H 0.124 0.876 41 H 0.151 0.849 42 H 0.153 0.847 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.929 -4.634 24.463 31.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.026 4.026 3 N -0.336 5.336 4 C -0.017 4.017 5 C 0.018 3.982 6 N -0.399 5.399 7 C -0.374 4.374 8 H 0.108 0.892 9 C -0.191 4.191 10 N -0.581 5.581 11 Si 0.717 3.283 12 H -0.210 1.210 13 H -0.217 1.217 14 H -0.204 1.204 15 C 0.302 3.698 16 O -0.394 6.394 17 C -0.117 4.117 18 C -0.028 4.028 19 N -0.003 5.003 20 O -0.094 6.094 21 C 0.023 3.977 22 C -0.113 4.113 23 C -0.115 4.115 24 C 0.051 3.949 25 F -0.112 7.112 26 C -0.093 4.093 27 C -0.160 4.160 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.108 0.892 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.049 0.951 36 H 0.045 0.955 37 H 0.193 0.807 38 H 0.070 0.930 39 H 0.144 0.856 40 H 0.142 0.858 41 H 0.169 0.831 42 H 0.171 0.829 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -18.178 -4.423 24.541 30.859 hybrid contribution -1.800 0.923 -0.889 2.210 sum -19.979 -3.500 23.652 31.158 Atomic orbital electron populations 1.22239 0.95669 1.02530 1.02658 1.21704 0.94475 0.82271 1.04107 1.47845 1.65536 1.14385 1.05868 1.21760 0.98306 0.98443 0.83219 1.20888 0.92675 0.95937 0.88703 1.42545 1.12427 1.61889 1.23082 1.19027 0.88237 1.27220 1.02876 0.89232 1.24677 0.96487 1.00357 0.97615 1.69704 1.20932 1.47804 1.19703 0.86521 0.82154 0.80723 0.78946 1.20977 1.21667 1.20363 1.19986 0.78371 0.86796 0.84618 1.90814 1.44157 1.17556 1.86921 1.20367 1.05767 0.97462 0.88103 1.23721 0.90154 0.94088 0.94831 1.79947 1.17447 1.03782 0.99086 1.89219 1.24817 1.48377 1.47000 1.20268 0.85821 0.95662 0.95941 1.19851 0.93701 0.97296 1.00453 1.21092 0.93361 0.99717 0.97310 1.17265 0.79364 0.99324 0.98899 1.91536 1.32583 1.92198 1.94874 1.20537 0.92959 0.96887 0.98963 1.20323 0.95520 1.01078 0.99110 0.91148 0.92637 0.91842 0.89208 0.90233 0.90278 0.89691 0.95076 0.95508 0.80670 0.93011 0.85619 0.85759 0.83105 0.82901 0.83649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.02 10.24 37.16 0.38 -0.64 16 2 C 0.10 0.74 5.93 -4.04 -0.02 0.72 16 3 N -0.60 -7.20 2.47 -173.68 -0.43 -7.63 16 4 C 0.11 1.61 5.52 -4.04 -0.02 1.59 16 5 C 0.15 2.92 6.58 -4.05 -0.03 2.89 16 6 N -0.75 -18.44 5.41 -59.91 -0.32 -18.76 16 7 C -0.24 -7.12 10.47 -15.06 -0.16 -7.28 16 8 H 0.09 2.81 8.06 -52.49 -0.42 2.38 16 9 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 10 N -0.93 -29.89 13.97 55.49 0.78 -29.11 16 11 Si 0.89 22.43 27.74 -169.99 -4.71 17.71 16 12 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 13 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 14 H -0.28 -6.49 6.52 56.52 0.37 -6.12 16 15 C 0.52 6.82 7.67 -10.99 -0.08 6.74 16 16 O -0.52 -9.51 15.61 5.56 0.09 -9.42 16 17 C -0.08 -0.67 4.85 -29.04 -0.14 -0.82 16 18 C 0.15 1.82 5.95 -80.12 -0.48 1.35 16 19 N -0.26 -3.70 12.81 34.91 0.45 -3.26 16 20 O -0.08 -1.13 12.07 7.46 0.09 -1.04 16 21 C 0.08 0.86 7.48 -38.50 -0.29 0.58 16 22 C -0.09 -0.73 10.06 -39.49 -0.40 -1.12 16 23 C -0.09 -0.65 9.99 -39.48 -0.39 -1.04 16 24 C 0.07 0.60 7.29 -39.46 -0.29 0.31 16 25 F -0.13 -1.18 17.26 2.25 0.04 -1.14 16 26 C -0.07 -0.65 10.08 -39.19 -0.39 -1.04 16 27 C -0.16 -1.72 6.32 -105.16 -0.66 -2.38 16 28 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.05 0.28 7.22 -51.93 -0.38 -0.09 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.72 8.07 -51.93 -0.42 0.30 16 32 H 0.08 0.42 6.44 -51.92 -0.33 0.08 16 33 H 0.08 1.07 8.07 -51.93 -0.42 0.65 16 34 H 0.08 1.45 7.42 -51.92 -0.39 1.06 16 35 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.03 0.52 8.14 -51.92 -0.42 0.10 16 37 H 0.36 8.49 5.53 -40.82 -0.23 8.26 16 38 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 39 H 0.13 0.85 7.40 -51.93 -0.38 0.46 16 40 H 0.12 0.62 7.19 -51.92 -0.37 0.24 16 41 H 0.15 0.77 8.06 -52.49 -0.42 0.34 16 42 H 0.15 0.60 8.06 -52.49 -0.42 0.18 16 43 H 0.15 1.00 8.06 -52.49 -0.42 0.57 16 LS Contribution 372.46 15.07 5.61 5.61 Total: -1.00 -37.82 372.46 -6.96 -44.77 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -5.47 Total: 2.38 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: -3.08 Total: -0.12 kcal Atomic # 7 Polarization: -59.23 SS G_CDS: 0.47 Total: -58.76 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.18 Total: -10.46 kcal Atomic # 9 Polarization: -1.18 SS G_CDS: 0.04 Total: -1.14 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.71 Total: 17.71 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -37.82 -6.96 -44.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716244941.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.688 kcal (2) G-P(sol) polarization free energy of solvation -37.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds