Wall clock time and date at job start Tue Mar 31 2020 18:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46499 * 109.47020 * 2 1 4 4 C 1.46503 * 119.99569 * 269.99454 * 3 2 1 5 5 C 1.52997 * 109.47445 * 269.99954 * 4 3 2 6 6 N 1.46494 * 109.47444 * 179.97438 * 5 4 3 7 7 C 1.36938 * 120.00220 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99909 * 0.02562 * 7 6 5 9 9 C 1.38815 * 119.99972 * 180.02562 * 7 6 5 10 10 N 1.31624 * 119.99768 * 180.02562 * 9 7 6 11 11 Si 1.86791 * 120.00019 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47493 * 90.00020 * 11 9 7 13 13 H 1.48512 * 109.46892 * 209.99822 * 11 9 7 14 14 H 1.48497 * 109.47228 * 329.99427 * 11 9 7 15 15 C 1.34770 * 120.00517 * 89.99625 * 3 2 1 16 16 O 1.21282 * 120.00244 * 179.97438 * 15 3 2 17 17 C 1.50700 * 119.99994 * 0.02562 * 15 3 2 18 18 C 1.50698 * 109.47293 * 179.97438 * 17 15 3 19 19 N 1.29738 * 126.28997 * 269.95672 * 18 17 15 20 20 O 1.41353 * 109.74033 * 180.02562 * 19 18 17 21 21 C 1.34898 * 109.32273 * 359.97438 * 20 19 18 22 22 C 1.38965 * 133.32641 * 179.97438 * 21 20 19 23 23 C 1.37758 * 119.96602 * 180.02562 * 22 21 20 24 24 C 1.38998 * 120.58412 * 359.97438 * 23 22 21 25 25 F 1.35099 * 119.84111 * 180.02562 * 24 23 22 26 26 C 1.37799 * 120.31738 * 0.02562 * 24 23 22 27 27 C 1.39724 * 119.65576 * 359.97438 * 26 24 23 28 28 H 1.09000 * 109.47216 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47138 * 300.00736 * 1 2 3 30 30 H 1.09002 * 109.46554 * 60.00205 * 1 2 3 31 31 H 1.08997 * 109.47649 * 239.99194 * 2 1 3 32 32 H 1.09008 * 109.46654 * 119.99096 * 2 1 3 33 33 H 1.09000 * 109.47170 * 30.00465 * 4 3 2 34 34 H 1.09008 * 109.46991 * 150.00363 * 4 3 2 35 35 H 1.09000 * 109.47353 * 300.00398 * 5 4 3 36 36 H 1.09008 * 109.47057 * 59.99828 * 5 4 3 37 37 H 0.96996 * 120.00073 * 0.02562 * 6 5 4 38 38 H 0.96994 * 119.99955 * 180.02562 * 10 9 7 39 39 H 1.08997 * 109.47244 * 59.99691 * 17 15 3 40 40 H 1.09007 * 109.46998 * 299.99896 * 17 15 3 41 41 H 1.07996 * 120.01341 * 359.74254 * 22 21 20 42 42 H 1.07999 * 119.70557 * 179.97438 * 23 22 21 43 43 H 1.07995 * 120.17371 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.7076 1.8313 -1.7104 6 7 3.9516 2.5213 -2.9795 7 6 5.1840 2.4491 -3.5722 8 1 5.9759 1.8831 -3.1042 9 6 5.4154 3.1033 -4.7744 10 7 6.5998 3.0335 -5.3443 11 14 4.0459 4.0828 -5.5833 12 1 4.0871 5.4855 -5.0979 13 1 4.2275 4.0635 -7.0572 14 1 2.7343 3.4778 -5.2384 15 6 2.2429 2.0167 1.1671 16 8 2.6476 3.1600 1.1670 17 6 1.9923 1.3062 2.4722 18 6 2.3191 2.2294 3.6176 19 7 3.4714 2.3507 4.2014 20 8 3.3856 3.3148 5.2315 21 6 2.1297 3.8047 5.2809 22 6 1.5069 4.7526 6.0838 23 6 0.1755 5.0496 5.8913 24 6 -0.5555 4.4090 4.8977 25 9 -1.8602 4.7123 4.7217 26 6 0.0442 3.4662 4.0912 27 6 1.3939 3.1560 4.2763 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 1.8935 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8902 33 1 1.5818 1.6876 -2.0285 34 1 2.0956 3.1410 -1.1385 35 1 4.3884 2.2155 -0.9508 36 1 3.8746 0.7620 -1.8406 37 1 3.2405 3.0299 -3.3996 38 1 6.7615 3.4909 -6.1842 39 1 2.6228 0.4190 2.5299 40 1 0.9444 1.0116 2.5302 41 1 2.0651 5.2528 6.8613 42 1 -0.3044 5.7867 6.5180 43 1 -0.5259 2.9702 3.3197 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716244941.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:49 Heat of formation + Delta-G solvation = -20.319388 kcal Electronic energy + Delta-G solvation = -28146.114721 eV Core-core repulsion = 23915.319567 eV Total energy + Delta-G solvation = -4230.795154 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.97206 -42.99503 -41.14382 -38.57770 -37.74142 -36.53148 -35.79572 -33.84804 -32.02611 -31.78563 -31.15192 -30.68367 -29.10841 -25.57045 -24.76726 -24.33519 -23.86412 -23.41549 -21.97035 -20.28199 -19.56890 -19.36732 -18.55131 -18.34277 -17.73286 -17.39882 -17.17821 -16.67041 -16.51201 -16.42962 -16.11159 -15.66065 -15.41876 -15.32882 -14.97090 -14.81230 -14.64827 -14.61569 -14.29810 -14.07111 -13.80951 -13.50018 -13.34991 -13.03401 -12.99706 -12.86821 -12.69357 -12.68372 -12.37751 -12.30630 -12.23689 -12.11484 -11.90062 -11.85713 -11.06648 -11.01250 -10.21896 -9.81162 -9.60026 -9.39901 -8.07995 -5.44158 -0.63925 -0.09297 0.73592 1.26444 1.34554 1.40786 1.44200 1.47350 1.87954 2.26834 2.44923 2.69702 2.91592 3.18944 3.22962 3.36241 3.37830 3.69160 3.83890 3.85958 4.04619 4.08565 4.10437 4.13159 4.16332 4.25998 4.44224 4.47830 4.51856 4.65096 4.72868 4.80800 4.86765 4.89178 4.92281 4.98318 5.06500 5.07407 5.45421 5.47982 5.48901 5.68182 6.00223 6.14843 6.29257 6.99203 7.02736 7.73602 7.94912 9.13445 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013807 B = 0.002566 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.410493 B =10907.920837 C =11104.423870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.088 3.912 3 N -0.598 5.598 4 C 0.119 3.881 5 C 0.149 3.851 6 N -0.755 5.755 7 C -0.243 4.243 8 H 0.051 0.949 9 C -0.063 4.063 10 N -0.983 5.983 11 Si 0.961 3.039 12 H -0.282 1.282 13 H -0.290 1.290 14 H -0.242 1.242 15 C 0.513 3.487 16 O -0.581 6.581 17 C -0.069 4.069 18 C 0.156 3.844 19 N -0.306 5.306 20 O -0.108 6.108 21 C 0.050 3.950 22 C -0.093 4.093 23 C -0.080 4.080 24 C 0.065 3.935 25 F -0.134 7.134 26 C -0.074 4.074 27 C -0.175 4.175 28 H 0.092 0.908 29 H 0.067 0.933 30 H 0.049 0.951 31 H 0.087 0.913 32 H 0.110 0.890 33 H 0.106 0.894 34 H 0.066 0.934 35 H -0.001 1.001 36 H 0.036 0.964 37 H 0.369 0.631 38 H 0.260 0.740 39 H 0.151 0.849 40 H 0.171 0.829 41 H 0.177 0.823 42 H 0.188 0.812 43 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.001 -5.109 25.362 35.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.033 4.033 3 N -0.330 5.330 4 C -0.005 4.005 5 C 0.021 3.979 6 N -0.401 5.401 7 C -0.374 4.374 8 H 0.069 0.931 9 C -0.255 4.255 10 N -0.633 5.633 11 Si 0.787 3.213 12 H -0.209 1.209 13 H -0.216 1.216 14 H -0.166 1.166 15 C 0.301 3.699 16 O -0.460 6.460 17 C -0.108 4.108 18 C -0.026 4.026 19 N -0.050 5.050 20 O -0.119 6.119 21 C -0.003 4.003 22 C -0.112 4.112 23 C -0.100 4.100 24 C 0.046 3.954 25 F -0.113 7.113 26 C -0.095 4.095 27 C -0.179 4.179 28 H 0.110 0.890 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.106 0.894 32 H 0.128 0.872 33 H 0.124 0.876 34 H 0.084 0.916 35 H 0.017 0.983 36 H 0.054 0.946 37 H 0.202 0.798 38 H 0.069 0.931 39 H 0.168 0.832 40 H 0.189 0.811 41 H 0.194 0.806 42 H 0.205 0.795 43 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -22.311 -4.957 25.486 34.233 hybrid contribution -0.513 1.043 -1.081 1.587 sum -22.824 -3.914 24.406 33.644 Atomic orbital electron populations 1.22209 0.93780 1.03950 1.02663 1.22095 0.95992 0.79619 1.05591 1.47937 1.64831 1.15890 1.04312 1.21410 0.95311 0.98171 0.85574 1.20971 0.95419 0.95493 0.86010 1.42495 1.10938 1.62392 1.24290 1.18973 0.89242 1.26231 1.02923 0.93141 1.25604 0.99472 1.01981 0.98435 1.69896 1.23679 1.49347 1.20357 0.85333 0.80026 0.78654 0.77325 1.20874 1.21609 1.16631 1.20698 0.76974 0.86210 0.86056 1.90792 1.46936 1.20428 1.87852 1.20566 1.09097 0.96824 0.84356 1.24215 0.89711 0.93906 0.94736 1.79864 1.19195 1.05395 1.00507 1.89138 1.26401 1.48919 1.47393 1.20835 0.85260 0.96948 0.97278 1.20250 0.94176 0.96378 1.00398 1.21486 0.92683 0.99213 0.96598 1.17456 0.79394 0.99373 0.99212 1.91539 1.32664 1.92179 1.94917 1.20743 0.92242 0.97059 0.99462 1.20468 0.96348 1.01590 0.99481 0.88968 0.91411 0.93134 0.89420 0.87234 0.87570 0.91567 0.98332 0.94617 0.79771 0.93094 0.83179 0.81116 0.80593 0.79486 0.81636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.27 10.24 71.98 0.74 -0.54 16 2 C 0.09 1.04 5.93 86.38 0.51 1.55 16 3 N -0.60 -13.17 2.47 -821.79 -2.03 -15.21 16 4 C 0.12 3.51 5.52 86.38 0.48 3.99 16 5 C 0.15 5.97 6.58 86.38 0.57 6.54 16 6 N -0.75 -36.91 5.41 -343.46 -1.86 -38.77 16 7 C -0.24 -14.55 10.47 84.03 0.88 -13.67 16 8 H 0.05 3.34 8.06 -2.91 -0.02 3.32 16 9 C -0.06 -3.85 5.50 84.86 0.47 -3.38 16 10 N -0.98 -64.68 13.97 21.65 0.30 -64.38 16 11 Si 0.96 46.13 27.74 68.60 1.90 48.03 16 12 H -0.28 -13.49 7.11 99.48 0.71 -12.79 16 13 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 14 H -0.24 -10.14 6.52 99.48 0.65 -9.50 16 15 C 0.51 13.02 7.67 87.66 0.67 13.69 16 16 O -0.58 -21.76 15.61 -3.04 -0.05 -21.81 16 17 C -0.07 -1.06 4.85 29.10 0.14 -0.92 16 18 C 0.16 3.63 5.95 45.04 0.27 3.90 16 19 N -0.31 -9.03 12.81 -43.47 -0.56 -9.58 16 20 O -0.11 -3.10 12.07 29.09 0.35 -2.74 16 21 C 0.05 1.13 7.48 22.97 0.17 1.30 16 22 C -0.09 -1.31 10.06 22.33 0.22 -1.08 16 23 C -0.08 -0.89 9.99 22.34 0.22 -0.66 16 24 C 0.07 0.95 7.29 22.35 0.16 1.11 16 25 F -0.13 -2.04 17.26 44.97 0.78 -1.26 16 26 C -0.07 -1.19 10.08 22.53 0.23 -0.96 16 27 C -0.18 -3.73 6.32 -20.22 -0.13 -3.86 16 28 H 0.09 0.35 8.14 -2.39 -0.02 0.34 16 29 H 0.07 0.37 7.22 -2.39 -0.02 0.35 16 30 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.09 1.12 8.07 -2.39 -0.02 1.10 16 32 H 0.11 0.66 6.44 -2.38 -0.02 0.65 16 33 H 0.11 2.57 8.07 -2.39 -0.02 2.55 16 34 H 0.07 2.23 7.42 -2.38 -0.02 2.22 16 35 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 36 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 37 H 0.37 16.75 5.53 -92.71 -0.51 16.24 16 38 H 0.26 16.17 8.31 -92.71 -0.77 15.40 16 39 H 0.15 1.59 7.40 -2.39 -0.02 1.57 16 40 H 0.17 0.95 7.19 -2.38 -0.02 0.94 16 41 H 0.18 1.45 8.06 -2.91 -0.02 1.43 16 42 H 0.19 0.73 8.06 -2.91 -0.02 0.70 16 43 H 0.17 1.80 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -88.69 372.46 4.93 -83.77 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: 0.48 Total: 14.95 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: 5.60 Total: 6.99 kcal Atomic # 7 Polarization: -123.79 SS G_CDS: -4.14 Total: -127.94 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: 0.30 Total: -24.55 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.78 Total: -1.26 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 1.90 Total: 48.03 kcal Total: -88.69 4.93 -83.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716244941.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.447 kcal (2) G-P(sol) polarization free energy of solvation -88.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds