Wall clock time and date at job start Tue Mar 31 2020 18:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34776 * 120.00485 * 2 1 4 4 O 1.21283 * 120.00192 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.99890 * 359.97438 * 3 2 1 6 6 N 1.46495 * 109.47295 * 179.97438 * 5 3 2 7 7 C 1.34775 * 120.00117 * 179.97438 * 6 5 3 8 8 O 1.21569 * 120.00043 * 0.02562 * 7 6 5 9 9 C 1.47730 * 119.99744 * 179.97438 * 7 6 5 10 10 C 1.39647 * 120.11963 * 359.72597 * 9 7 6 11 11 C 1.37836 * 119.87598 * 179.73664 * 10 9 7 12 12 C 1.38659 * 120.12043 * 0.51938 * 11 10 9 13 13 F 1.35102 * 119.87906 * 179.73782 * 12 11 10 14 14 C 1.38652 * 120.23527 * 359.75944 * 12 11 10 15 15 C 1.37827 * 120.12354 * 359.97438 * 14 12 11 16 16 C 1.46508 * 119.99536 * 179.97438 * 2 1 3 17 17 C 1.53496 * 114.20706 * 60.00133 * 16 2 1 18 18 N 1.47062 * 87.98485 * 220.14769 * 17 16 2 19 19 C 1.36939 * 136.05593 * 207.08750 * 18 17 16 20 20 H 1.08008 * 119.99868 * 7.82597 * 19 18 17 21 21 C 1.38808 * 120.00203 * 187.82575 * 19 18 17 22 22 N 1.31618 * 119.99998 * 195.17052 * 21 19 18 23 23 Si 1.86797 * 119.99840 * 15.16580 * 21 19 18 24 24 H 1.48503 * 109.47450 * 270.00422 * 23 21 19 25 25 H 1.48503 * 109.47360 * 30.00092 * 23 21 19 26 26 H 1.48498 * 109.47360 * 150.00270 * 23 21 19 27 27 C 1.47059 * 87.88616 * 27.34176 * 18 17 16 28 28 H 1.08994 * 109.47345 * 270.00261 * 1 2 3 29 29 H 1.09001 * 109.46733 * 30.00327 * 1 2 3 30 30 H 1.08996 * 109.47534 * 149.99922 * 1 2 3 31 31 H 1.09000 * 109.47214 * 300.00629 * 5 3 2 32 32 H 1.09000 * 109.47089 * 60.00029 * 5 3 2 33 33 H 0.97003 * 119.99684 * 0.02562 * 6 5 3 34 34 H 1.08000 * 120.06239 * 359.97438 * 10 9 7 35 35 H 1.08000 * 119.94130 * 180.25559 * 11 10 9 36 36 H 1.08004 * 119.93475 * 179.97438 * 14 12 11 37 37 H 1.08005 * 120.06572 * 179.97438 * 15 14 12 38 38 H 1.09001 * 113.27729 * 193.06987 * 16 2 1 39 39 H 1.09008 * 113.46447 * 105.36204 * 17 16 2 40 40 H 1.08996 * 113.51824 * 334.94014 * 17 16 2 41 41 H 0.96995 * 120.00365 * 354.90363 * 22 21 19 42 42 H 1.08997 * 113.47135 * 87.43718 * 27 18 17 43 43 H 1.09007 * 113.47198 * 217.88025 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3518 1.1671 0.0005 5 6 1.3855 2.4723 -0.0006 6 7 2.3376 3.5857 0.0002 7 6 1.8884 4.8564 -0.0007 8 8 0.6932 5.0786 -0.0016 9 6 2.8485 5.9792 0.0006 10 6 4.2219 5.7268 0.0085 11 6 5.1133 6.7781 0.0042 12 6 4.6484 8.0845 0.0029 13 9 5.5265 9.1113 0.0041 14 6 3.2858 8.3407 0.0009 15 6 2.3857 7.2969 -0.0003 16 6 2.1974 -1.2689 0.0006 17 6 1.9058 -2.1644 -1.2115 18 7 1.9166 -3.3164 -0.2974 19 6 2.1881 -4.6546 -0.4008 20 1 2.5983 -5.0532 -1.3170 21 6 1.9361 -5.4989 0.6718 22 7 2.4597 -6.7062 0.6962 23 14 0.8540 -4.9215 2.0807 24 1 1.6949 -4.2660 3.1144 25 1 -0.1480 -3.9517 1.5700 26 1 0.1547 -6.0875 2.6778 27 6 1.5013 -2.4000 0.7751 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3634 -0.8899 -0.5138 31 1 0.7591 2.5298 -0.8908 32 1 0.7586 2.5303 0.8891 33 1 3.2912 3.4084 0.0005 34 1 4.5850 4.7096 0.0141 35 1 6.1757 6.5841 0.0062 36 1 2.9291 9.3601 0.0003 37 1 1.3245 7.4975 -0.0015 38 1 3.2575 -1.1542 0.2269 39 1 2.7144 -2.1825 -1.9423 40 1 0.9322 -1.9792 -1.6650 41 1 2.9601 -7.0333 -0.0676 42 1 0.4207 -2.2762 0.8462 43 1 1.9652 -2.6188 1.7370 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716752066.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:03 Heat of formation + Delta-G solvation = -37.495743 kcal Electronic energy + Delta-G solvation = -27516.417349 eV Core-core repulsion = 23284.877372 eV Total energy + Delta-G solvation = -4231.539977 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.02599 -41.74187 -41.08178 -39.74973 -39.02696 -36.15003 -35.69414 -34.42502 -32.33096 -32.02412 -30.28738 -28.65067 -27.91788 -26.98161 -25.01334 -24.25824 -23.84671 -21.74658 -21.61442 -20.36649 -19.57374 -19.38657 -18.61727 -18.17841 -17.63043 -17.37888 -17.21862 -16.71242 -16.67727 -16.46236 -16.17444 -15.99036 -15.66406 -15.29975 -15.17470 -14.69336 -14.35725 -14.29229 -14.21866 -13.80173 -13.76112 -13.63995 -13.53999 -13.36051 -13.18260 -13.14068 -13.01263 -12.51909 -12.08779 -11.98150 -11.53865 -11.30887 -11.25877 -11.08615 -10.85472 -10.36835 -10.23561 -9.83191 -9.67711 -9.28414 -8.65706 -5.51057 -0.42492 0.16196 1.38958 1.40574 1.50485 1.56160 1.63799 1.66671 2.18616 2.54312 2.64884 3.00947 3.10124 3.14227 3.33321 3.53101 3.58977 3.66302 3.82765 4.08641 4.15067 4.19393 4.21823 4.26001 4.32098 4.36660 4.55222 4.59107 4.65941 4.73257 4.74696 4.86275 4.97028 5.00498 5.03938 5.05442 5.14462 5.15342 5.18375 5.49772 5.70981 5.92076 6.27374 6.34934 6.65915 6.93744 7.02273 7.29072 8.21415 8.85940 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.028284 B = 0.001952 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.720380 B =14341.765446 C =14820.037588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.592 5.592 3 C 0.511 3.489 4 O -0.574 6.574 5 C 0.108 3.892 6 N -0.711 5.711 7 C 0.566 3.434 8 O -0.566 6.566 9 C -0.160 4.160 10 C -0.052 4.052 11 C -0.160 4.160 12 C 0.115 3.885 13 F -0.140 7.140 14 C -0.159 4.159 15 C -0.034 4.034 16 C 0.126 3.874 17 C 0.109 3.891 18 N -0.650 5.650 19 C -0.294 4.294 20 H 0.049 0.951 21 C -0.083 4.083 22 N -0.965 5.965 23 Si 1.101 2.899 24 H -0.280 1.280 25 H -0.243 1.243 26 H -0.302 1.302 27 C 0.092 3.908 28 H 0.080 0.920 29 H 0.106 0.894 30 H 0.077 0.923 31 H 0.120 0.880 32 H 0.119 0.881 33 H 0.415 0.585 34 H 0.153 0.847 35 H 0.161 0.839 36 H 0.163 0.837 37 H 0.151 0.849 38 H 0.109 0.891 39 H 0.041 0.959 40 H 0.066 0.934 41 H 0.247 0.753 42 H 0.078 0.922 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.474 33.163 -0.756 33.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.324 5.324 3 C 0.299 3.701 4 O -0.453 6.453 5 C -0.019 4.019 6 N -0.366 5.366 7 C 0.355 3.645 8 O -0.446 6.446 9 C -0.163 4.163 10 C -0.071 4.071 11 C -0.179 4.179 12 C 0.095 3.905 13 F -0.119 7.119 14 C -0.178 4.178 15 C -0.052 4.052 16 C 0.020 3.980 17 C -0.017 4.017 18 N -0.379 5.379 19 C -0.421 4.421 20 H 0.067 0.933 21 C -0.275 4.275 22 N -0.610 5.610 23 Si 0.925 3.075 24 H -0.207 1.207 25 H -0.167 1.167 26 H -0.230 1.230 27 C -0.034 4.034 28 H 0.099 0.901 29 H 0.125 0.875 30 H 0.095 0.905 31 H 0.138 0.862 32 H 0.137 0.863 33 H 0.254 0.746 34 H 0.170 0.830 35 H 0.178 0.822 36 H 0.180 0.820 37 H 0.168 0.832 38 H 0.127 0.873 39 H 0.060 0.940 40 H 0.083 0.917 41 H 0.056 0.944 42 H 0.095 0.905 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.207 32.638 0.657 32.802 hybrid contribution 1.585 -0.511 -1.871 2.505 sum -1.621 32.127 -1.214 32.191 Atomic orbital electron populations 1.22269 0.76676 1.05196 1.04213 1.47775 1.08612 1.04361 1.71605 1.20879 0.87730 0.86036 0.75413 1.90681 1.15351 1.87499 1.51812 1.21217 0.91812 0.82186 1.06657 1.45658 1.11686 1.04549 1.74713 1.18285 0.87946 0.82701 0.75602 1.90778 1.17149 1.85149 1.51534 1.19942 0.93628 0.93783 1.08929 1.21399 0.91103 1.00441 0.94127 1.21342 1.02538 0.90315 1.03687 1.18213 0.87521 0.84632 1.00118 1.91525 1.68717 1.58118 1.93490 1.21340 0.90666 1.01899 1.03847 1.21235 1.01242 0.90032 0.92736 1.22889 0.97099 0.80802 0.97180 1.22948 0.99714 0.85043 0.94015 1.45853 1.80459 1.03210 1.08378 1.19910 1.38292 0.82100 1.01845 0.93333 1.27201 1.01902 0.94436 1.03999 1.71014 1.38397 1.20444 1.31150 0.83355 0.76005 0.75037 0.73068 1.20699 1.16660 1.23006 1.23303 0.99166 0.87566 0.93339 0.90115 0.87549 0.90462 0.86232 0.86299 0.74568 0.82958 0.82151 0.81951 0.83160 0.87342 0.94046 0.91681 0.94401 0.90494 0.93481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.87 8.92 127.77 1.14 2.01 16 2 N -0.59 -13.58 3.12 -821.40 -2.56 -16.14 16 3 C 0.51 11.45 7.74 87.66 0.68 12.13 16 4 O -0.57 -16.82 15.18 -3.04 -0.05 -16.87 16 5 C 0.11 1.71 4.71 85.63 0.40 2.11 16 6 N -0.71 -12.03 5.48 -469.83 -2.57 -14.60 16 7 C 0.57 10.54 7.77 86.75 0.67 11.22 16 8 O -0.57 -13.52 16.34 -3.93 -0.06 -13.58 16 9 C -0.16 -2.41 5.87 -20.09 -0.12 -2.53 16 10 C -0.05 -0.62 9.54 22.51 0.21 -0.41 16 11 C -0.16 -1.80 10.01 22.28 0.22 -1.57 16 12 C 0.11 1.46 7.31 22.47 0.16 1.63 16 13 F -0.14 -2.03 17.26 44.97 0.78 -1.25 16 14 C -0.16 -1.78 10.01 22.27 0.22 -1.56 16 15 C -0.03 -0.45 9.59 22.52 0.22 -0.23 16 16 C 0.13 4.04 4.57 45.55 0.21 4.25 16 17 C 0.11 3.97 8.24 83.17 0.69 4.66 16 18 N -0.65 -30.41 3.62 -738.12 -2.67 -33.09 16 19 C -0.29 -16.92 11.03 84.03 0.93 -16.00 16 20 H 0.05 3.04 8.06 -2.91 -0.02 3.02 16 21 C -0.08 -4.91 5.50 84.86 0.47 -4.45 16 22 N -0.97 -62.09 13.70 21.65 0.30 -61.79 16 23 Si 1.10 51.23 25.50 68.60 1.75 52.98 16 24 H -0.28 -12.38 6.97 99.48 0.69 -11.69 16 25 H -0.24 -9.55 5.66 99.48 0.56 -8.99 16 26 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 27 C 0.09 3.41 5.03 83.26 0.42 3.83 16 28 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.11 0.93 6.44 -2.39 -0.02 0.91 16 30 H 0.08 1.31 6.18 -2.39 -0.01 1.30 16 31 H 0.12 1.54 7.40 -2.39 -0.02 1.52 16 32 H 0.12 1.57 8.11 -2.39 -0.02 1.55 16 33 H 0.41 6.70 5.47 -92.71 -0.51 6.19 16 34 H 0.15 1.39 6.40 -2.91 -0.02 1.37 16 35 H 0.16 1.19 8.06 -2.91 -0.02 1.17 16 36 H 0.16 1.10 8.06 -2.91 -0.02 1.07 16 37 H 0.15 1.88 7.65 -2.91 -0.02 1.86 16 38 H 0.11 3.93 7.29 -2.39 -0.02 3.91 16 39 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 40 H 0.07 2.07 6.97 -2.39 -0.02 2.05 16 41 H 0.25 15.98 8.73 -92.71 -0.81 15.18 16 42 H 0.08 2.50 5.45 -2.39 -0.01 2.49 16 43 H 0.05 1.86 6.22 -2.38 -0.01 1.85 16 Total: -1.00 -77.46 358.54 1.80 -75.66 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: 0.37 Total: 13.59 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: 6.52 Total: 15.08 kcal Atomic # 7 Polarization: -118.11 SS G_CDS: -7.51 Total: -125.62 kcal Atomic # 8 Polarization: -30.33 SS G_CDS: -0.11 Total: -30.44 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.78 Total: -1.25 kcal Atomic # 14 Polarization: 51.23 SS G_CDS: 1.75 Total: 52.98 kcal Total: -77.46 1.80 -75.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716752066.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.163 kcal (2) G-P(sol) polarization free energy of solvation -77.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds