Wall clock time and date at job start Tue Mar 31 2020 18:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47378 * 2 1 4 4 C 1.52997 * 109.47324 * 120.00232 * 2 1 3 5 5 N 1.46503 * 109.47445 * 175.00082 * 4 2 1 6 6 C 1.46499 * 119.99569 * 269.99954 * 5 4 2 7 7 C 1.34770 * 119.99914 * 89.99783 * 5 4 2 8 8 O 1.21282 * 120.00244 * 359.97438 * 7 5 4 9 9 C 1.50700 * 119.99994 * 180.02562 * 7 5 4 10 10 C 1.50698 * 109.47293 * 179.97438 * 9 7 5 11 11 N 1.29738 * 126.28997 * 269.95672 * 10 9 7 12 12 O 1.41353 * 109.74033 * 180.02562 * 11 10 9 13 13 C 1.34898 * 109.32273 * 359.97438 * 12 11 10 14 14 C 1.38965 * 133.32641 * 179.97438 * 13 12 11 15 15 C 1.37758 * 119.96602 * 180.02562 * 14 13 12 16 16 C 1.38998 * 120.58412 * 359.97438 * 15 14 13 17 17 F 1.35099 * 119.84111 * 180.02562 * 16 15 14 18 18 C 1.37799 * 120.31738 * 0.02562 * 16 15 14 19 19 C 1.39724 * 119.65576 * 359.97438 * 18 16 15 20 20 N 1.46504 * 109.47024 * 240.00188 * 2 1 3 21 21 C 1.36932 * 120.00012 * 85.00202 * 20 2 1 22 22 H 1.07999 * 120.00647 * 359.97438 * 21 20 2 23 23 C 1.38818 * 119.99995 * 179.97438 * 21 20 2 24 24 N 1.31618 * 120.00016 * 179.97438 * 23 21 20 25 25 Si 1.86805 * 119.99810 * 0.02562 * 23 21 20 26 26 H 1.48494 * 109.47422 * 89.99695 * 25 23 21 27 27 H 1.48501 * 109.46743 * 209.99769 * 25 23 21 28 28 H 1.48501 * 109.46951 * 329.99362 * 25 23 21 29 29 H 1.09003 * 109.47240 * 60.00124 * 1 2 3 30 30 H 1.09000 * 109.47378 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47552 * 299.99904 * 1 2 3 32 32 H 1.09000 * 109.47353 * 54.99684 * 4 2 1 33 33 H 1.09008 * 109.46691 * 294.99856 * 4 2 1 34 34 H 1.09003 * 109.46892 * 269.99674 * 6 5 4 35 35 H 1.08997 * 109.47568 * 30.00310 * 6 5 4 36 36 H 1.09008 * 109.46669 * 150.00368 * 6 5 4 37 37 H 1.08997 * 109.47244 * 59.99691 * 9 7 5 38 38 H 1.09007 * 109.46998 * 299.99896 * 9 7 5 39 39 H 1.07996 * 120.01341 * 359.74254 * 14 13 12 40 40 H 1.07999 * 119.70557 * 179.97438 * 15 14 13 41 41 H 1.07995 * 120.17371 * 180.02562 * 18 16 15 42 42 H 0.96997 * 120.00025 * 264.99909 * 20 2 1 43 43 H 0.97004 * 119.99801 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.1257 -1.9920 0.5611 7 6 4.2675 0.1491 1.7156 8 8 3.7495 1.1143 2.2362 9 6 5.7694 0.0413 1.6547 10 6 6.3868 1.2519 2.3061 11 7 6.7004 2.3646 1.7174 12 8 7.2564 3.2620 2.6574 13 6 7.2842 2.6755 3.8719 14 6 7.7183 3.0950 5.1236 15 6 7.6159 2.2495 6.2064 16 6 7.0800 0.9753 6.0606 17 9 6.9861 0.1588 7.1327 18 6 6.6440 0.5410 4.8276 19 6 6.7424 1.3890 3.7215 20 7 2.0183 -0.6906 -1.1962 21 6 2.1491 -0.0074 -2.3757 22 1 1.8919 1.0404 -2.4244 23 6 2.6123 -0.6617 -3.5091 24 7 2.7375 -0.0052 -4.6429 25 14 3.0565 -2.4742 -3.4252 26 1 1.8594 -3.2926 -3.7451 27 1 4.1323 -2.7660 -4.4064 28 1 3.5310 -2.8047 -2.0574 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6053 -1.7198 1.2951 33 1 1.7516 -0.1583 2.1369 34 1 4.2822 -2.7688 1.3096 35 1 3.4757 -2.3722 -0.2269 36 1 5.0851 -1.7021 0.1324 37 1 6.0879 -0.0128 0.6138 38 1 6.0907 -0.8581 2.1802 39 1 8.1400 4.0816 5.2465 40 1 7.9549 2.5797 7.1772 41 1 6.2277 -0.4493 4.7170 42 1 2.2489 -1.6317 -1.1527 43 1 3.0609 -0.4625 -5.4350 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717746607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:08 Heat of formation + Delta-G solvation = -12.815527 kcal Electronic energy + Delta-G solvation = -28768.323359 eV Core-core repulsion = 24537.853597 eV Total energy + Delta-G solvation = -4230.469762 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.95463 -42.98786 -41.04707 -38.57063 -38.16181 -35.93089 -35.76938 -34.06941 -31.94884 -31.59256 -30.94922 -30.48731 -28.17848 -26.80776 -25.32459 -24.73021 -23.84956 -22.48650 -21.68310 -20.36898 -19.61699 -19.35830 -18.51081 -18.29388 -17.68841 -17.23641 -17.10027 -16.85888 -16.63116 -16.46463 -16.11470 -15.71866 -15.35352 -15.12354 -14.97419 -14.60223 -14.47844 -14.21089 -14.10164 -13.93892 -13.73692 -13.41752 -13.31016 -13.28422 -12.98610 -12.77911 -12.74081 -12.65340 -12.41740 -12.35211 -12.23290 -12.16692 -11.78922 -11.66102 -11.03671 -10.95203 -10.20863 -9.68520 -9.58658 -9.25677 -7.98979 -5.33789 -0.62155 -0.07845 0.75903 1.29648 1.33327 1.46157 1.49245 1.53291 2.03041 2.29540 2.52149 2.70780 2.94109 3.20143 3.32063 3.38707 3.45412 3.56501 3.85718 3.87412 4.03134 4.10751 4.14675 4.20709 4.27591 4.35554 4.49545 4.59151 4.66691 4.70929 4.74455 4.82682 4.84817 4.87882 4.91320 4.94793 5.06056 5.21983 5.33123 5.50257 5.60762 5.78513 6.03084 6.21998 6.32326 7.05423 7.10641 7.81977 8.07869 9.23350 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016617 B = 0.002967 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.637580 B = 9435.506933 C = 9844.675624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.155 3.845 3 H 0.015 0.985 4 C 0.116 3.884 5 N -0.596 5.596 6 C 0.060 3.940 7 C 0.517 3.483 8 O -0.581 6.581 9 C -0.074 4.074 10 C 0.156 3.844 11 N -0.312 5.312 12 O -0.107 6.107 13 C 0.049 3.951 14 C -0.092 4.092 15 C -0.078 4.078 16 C 0.067 3.933 17 F -0.133 7.133 18 C -0.074 4.074 19 C -0.172 4.172 20 N -0.738 5.738 21 C -0.226 4.226 22 H 0.035 0.965 23 C -0.072 4.072 24 N -0.992 5.992 25 Si 0.956 3.044 26 H -0.284 1.284 27 H -0.302 1.302 28 H -0.216 1.216 29 H 0.028 0.972 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.110 0.890 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.131 0.869 38 H 0.173 0.827 39 H 0.177 0.823 40 H 0.190 0.810 41 H 0.166 0.834 42 H 0.370 0.630 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.128 -6.338 26.475 29.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.046 3.954 3 H 0.033 0.967 4 C -0.007 4.007 5 N -0.326 5.326 6 C -0.082 4.082 7 C 0.304 3.696 8 O -0.461 6.461 9 C -0.114 4.114 10 C -0.025 4.025 11 N -0.055 5.055 12 O -0.118 6.118 13 C -0.005 4.005 14 C -0.111 4.111 15 C -0.098 4.098 16 C 0.048 3.952 17 F -0.112 7.112 18 C -0.094 4.094 19 C -0.176 4.176 20 N -0.384 5.384 21 C -0.357 4.357 22 H 0.053 0.947 23 C -0.262 4.262 24 N -0.643 5.643 25 Si 0.783 3.217 26 H -0.211 1.211 27 H -0.229 1.229 28 H -0.140 1.140 29 H 0.047 0.953 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.129 0.871 33 H 0.107 0.893 34 H 0.120 0.880 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.149 0.851 38 H 0.191 0.809 39 H 0.195 0.805 40 H 0.207 0.793 41 H 0.184 0.816 42 H 0.206 0.794 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.927 -4.925 25.534 28.207 hybrid contribution -0.139 -0.732 -0.577 0.942 sum 10.788 -5.657 24.957 27.772 Atomic orbital electron populations 1.22205 0.96497 1.02170 1.00609 1.20757 0.93463 0.94726 0.86452 0.96684 1.21830 0.79023 1.02661 0.97230 1.47672 1.06708 1.21704 1.56526 1.22395 0.99422 0.87473 0.98932 1.20428 0.89244 0.82032 0.77901 1.90718 1.75796 1.32392 1.47199 1.20512 0.90962 0.94887 1.05025 1.24170 0.92244 0.94419 0.91678 1.79942 1.14574 1.01130 1.09879 1.89142 1.71743 1.36036 1.14860 1.20891 0.98123 0.92317 0.89132 1.20254 1.02119 1.02899 0.85821 1.21490 0.96621 0.90705 1.00983 1.17418 1.04148 0.90312 0.83342 1.91539 1.94425 1.71868 1.53352 1.20740 0.98318 1.01166 0.89199 1.20419 1.07944 0.96096 0.93147 1.42618 1.80054 1.09445 1.06271 1.18877 1.35379 0.93731 0.87755 0.94661 1.25657 1.02188 1.03650 0.94727 1.69942 1.54759 1.38224 1.01382 0.85491 0.77495 0.79125 0.79635 1.21064 1.22888 1.13964 0.95282 0.91325 0.91361 0.87142 0.89326 0.87968 0.91458 0.89981 0.85078 0.80915 0.80525 0.79275 0.81611 0.79399 0.93539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.19 9.49 71.98 0.68 -4.51 16 2 C 0.16 5.88 3.20 44.99 0.14 6.02 16 3 H 0.01 0.70 8.08 -2.39 -0.02 0.68 16 4 C 0.12 3.23 5.05 86.38 0.44 3.66 16 5 N -0.60 -15.82 2.73 -846.74 -2.31 -18.13 16 6 C 0.06 1.18 9.86 127.77 1.26 2.44 16 7 C 0.52 15.36 7.67 87.66 0.67 16.03 16 8 O -0.58 -22.47 15.61 -3.04 -0.05 -22.52 16 9 C -0.07 -1.63 4.85 29.10 0.14 -1.49 16 10 C 0.16 4.37 5.95 45.04 0.27 4.64 16 11 N -0.31 -10.81 12.81 -43.47 -0.56 -11.37 16 12 O -0.11 -3.41 12.07 29.09 0.35 -3.06 16 13 C 0.05 1.20 7.48 22.97 0.17 1.37 16 14 C -0.09 -1.39 10.06 22.33 0.22 -1.17 16 15 C -0.08 -0.91 9.99 22.34 0.22 -0.69 16 16 C 0.07 1.02 7.29 22.35 0.16 1.19 16 17 F -0.13 -2.05 17.26 44.97 0.78 -1.27 16 18 C -0.07 -1.29 10.08 22.53 0.23 -1.06 16 19 C -0.17 -4.10 6.32 -20.22 -0.13 -4.23 16 20 N -0.74 -32.25 4.37 -322.95 -1.41 -33.66 16 21 C -0.23 -12.86 10.41 84.04 0.87 -11.99 16 22 H 0.04 2.33 8.06 -2.91 -0.02 2.30 16 23 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 24 N -0.99 -64.31 13.97 21.65 0.30 -64.01 16 25 Si 0.96 41.87 27.74 68.60 1.90 43.77 16 26 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 27 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 28 H -0.22 -7.33 4.90 99.48 0.49 -6.84 16 29 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.07 1.92 8.14 -2.39 -0.02 1.91 16 32 H 0.11 2.33 8.07 -2.39 -0.02 2.31 16 33 H 0.09 2.47 7.42 -2.38 -0.02 2.45 16 34 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.07 1.61 3.94 -2.39 -0.01 1.60 16 36 H 0.08 1.48 6.44 -2.38 -0.02 1.46 16 37 H 0.13 2.83 7.40 -2.39 -0.02 2.81 16 38 H 0.17 1.90 8.11 -2.38 -0.02 1.88 16 39 H 0.18 1.62 8.06 -2.91 -0.02 1.60 16 40 H 0.19 0.76 8.06 -2.91 -0.02 0.74 16 41 H 0.17 2.06 8.06 -2.91 -0.02 2.04 16 42 H 0.37 14.32 3.49 -92.71 -0.32 13.99 16 43 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -85.63 364.93 5.35 -80.28 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: 0.52 Total: 23.43 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: 5.83 Total: 6.53 kcal Atomic # 7 Polarization: -123.18 SS G_CDS: -3.98 Total: -127.16 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: 0.30 Total: -25.58 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.78 Total: -1.27 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 1.90 Total: 43.77 kcal Total: -85.63 5.35 -80.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717746607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.466 kcal (2) G-P(sol) polarization free energy of solvation -85.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds