Wall clock time and date at job start Tue Mar 31 2020 18:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35085 * 125.90688 * 2 1 4 4 C 1.35012 * 108.03517 * 180.02562 * 3 2 1 5 5 C 1.41038 * 107.84023 * 0.02562 * 4 3 2 6 6 C 1.47860 * 126.06547 * 180.02562 * 5 4 3 7 7 C 1.36735 * 126.81686 * 180.30648 * 6 5 4 8 8 C 1.41892 * 103.81386 * 180.13379 * 7 6 5 9 9 C 1.48351 * 126.83896 * 179.88232 * 8 7 6 10 10 O 1.21486 * 119.99918 * 359.71770 * 9 8 7 11 11 N 1.34776 * 119.99670 * 179.71195 * 9 8 7 12 12 C 1.46500 * 119.99923 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.47226 * 180.02562 * 12 11 9 14 14 H 1.09004 * 109.47434 * 64.99688 * 13 12 11 15 15 C 1.52997 * 109.47114 * 184.99495 * 13 12 11 16 16 O 1.42903 * 109.47059 * 55.00009 * 15 13 12 17 17 N 1.46498 * 109.46963 * 304.99288 * 13 12 11 18 18 C 1.36943 * 119.99752 * 154.72381 * 17 13 12 19 19 H 1.08002 * 119.99793 * 0.27665 * 18 17 13 20 20 C 1.38811 * 120.00012 * 180.27737 * 18 17 13 21 21 N 1.31611 * 120.00081 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 119.99814 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47483 * 90.00178 * 22 20 18 24 24 H 1.48498 * 109.47011 * 210.00042 * 22 20 18 25 25 H 1.48502 * 109.47495 * 329.99664 * 22 20 18 26 26 N 1.31094 * 106.31448 * 359.62763 * 8 7 6 27 27 O 1.20877 * 111.76889 * 0.23970 * 26 8 7 28 28 N 1.31817 * 107.86992 * 0.26462 * 5 4 3 29 29 H 1.08993 * 109.47795 * 89.99756 * 1 2 3 30 30 H 1.09001 * 109.46695 * 209.99359 * 1 2 3 31 31 H 1.09004 * 109.47623 * 329.98944 * 1 2 3 32 32 H 1.08000 * 125.99091 * 0.02959 * 3 2 1 33 33 H 1.07997 * 126.08126 * 180.02562 * 4 3 2 34 34 H 1.07994 * 128.09103 * 0.02562 * 7 6 5 35 35 H 0.96998 * 119.99957 * 0.02562 * 11 9 8 36 36 H 1.08995 * 109.47176 * 59.99567 * 12 11 9 37 37 H 1.09008 * 109.46559 * 299.99697 * 12 11 9 38 38 H 1.08997 * 109.47241 * 175.00015 * 15 13 12 39 39 H 1.09002 * 109.47280 * 295.00109 * 15 13 12 40 40 H 0.96700 * 113.99965 * 180.02562 * 16 15 13 41 41 H 0.97001 * 120.00384 * 335.00737 * 17 13 12 42 42 H 0.97008 * 120.00329 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2572 1.0942 0.0000 4 6 3.5422 0.6798 -0.0006 5 6 3.5414 -0.7306 -0.0015 6 6 4.7361 -1.6017 -0.0019 7 6 4.7533 -2.9689 -0.0087 8 6 6.1353 -3.2904 -0.0024 9 6 6.7327 -4.6483 -0.0034 10 8 6.0142 -5.6280 -0.0050 11 7 8.0724 -4.7951 -0.0027 12 6 8.6624 -6.1360 -0.0042 13 6 10.1881 -6.0220 -0.0024 14 1 10.5171 -5.5633 0.9301 15 6 10.8039 -7.4168 -0.1296 16 8 10.2823 -8.0636 -1.2922 17 7 10.6172 -5.1939 -1.1321 18 6 11.8098 -4.5231 -1.0752 19 1 12.4360 -4.6083 -0.1994 20 6 12.2138 -3.7339 -2.1433 21 7 13.3602 -3.0897 -2.0889 22 14 11.1303 -3.5861 -3.6577 23 1 10.1963 -2.4440 -3.4887 24 1 11.9801 -3.3577 -4.8539 25 1 10.3532 -4.8391 -3.8347 26 7 6.7791 -2.1484 -0.0011 27 8 6.0213 -1.2066 -0.0009 28 7 2.2866 -1.1344 -0.0073 29 1 -0.3634 0.0000 -1.0275 30 1 -0.3633 -0.8901 0.5137 31 1 -0.3634 0.8899 0.5140 32 1 1.9216 2.1207 0.0005 33 1 4.4154 1.3153 -0.0003 34 1 3.9118 -3.6457 -0.0153 35 1 8.6460 -4.0129 -0.0011 36 1 8.3389 -6.6742 -0.8951 37 1 8.3377 -6.6768 0.8849 38 1 11.8868 -7.3292 -0.2176 39 1 10.5576 -8.0048 0.7546 40 1 10.6296 -8.9546 -1.4358 41 1 10.0548 -5.1173 -1.9186 42 1 13.6427 -2.5384 -2.8354 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717765741.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:27 Heat of formation + Delta-G solvation = 84.341775 kcal Electronic energy + Delta-G solvation = -27773.041084 eV Core-core repulsion = 23566.704340 eV Total energy + Delta-G solvation = -4206.336744 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.12886 -41.52971 -39.45478 -37.27517 -35.07515 -34.54309 -34.02163 -33.53933 -31.83993 -31.39068 -30.52375 -28.96277 -27.17846 -26.12766 -24.01700 -23.49345 -23.20025 -21.83610 -21.24229 -20.21964 -19.61603 -18.33147 -17.90322 -17.78640 -16.91601 -16.83413 -16.66675 -15.91284 -15.83663 -15.14547 -14.95848 -14.56909 -14.29522 -14.18922 -14.01073 -13.59791 -13.37843 -13.33162 -13.16812 -13.04740 -12.88048 -12.83184 -12.39159 -11.78275 -11.61935 -11.19581 -11.02018 -10.84920 -10.75665 -10.71805 -10.52027 -10.18801 -10.04845 -9.62310 -9.46870 -9.36115 -8.98958 -8.84682 -8.81479 -7.33274 -5.80388 -3.16958 0.63672 1.31549 1.64384 1.75918 2.68586 2.75711 3.10578 3.27750 3.40844 3.47003 3.48584 3.92826 4.11727 4.18209 4.47478 4.59229 4.64467 4.79917 4.81459 4.83398 4.92151 5.15940 5.19883 5.21980 5.32557 5.34022 5.48595 5.55094 5.75068 5.79044 5.90185 5.92414 6.00158 6.16910 6.37075 6.47309 6.57941 6.66594 7.08661 7.60990 7.91997 7.94324 8.11265 8.26535 8.38327 9.15808 9.88712 10.07981 11.37224 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014731 B = 0.002630 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.320390 B =10643.377746 C =11955.153158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.367 5.367 3 C 0.057 3.943 4 C -0.244 4.244 5 C 0.142 3.858 6 C 0.031 3.969 7 C -0.139 4.139 8 C -0.024 4.024 9 C 0.595 3.405 10 O -0.531 6.531 11 N -0.699 5.699 12 C 0.114 3.886 13 C 0.171 3.829 14 H 0.076 0.924 15 C 0.060 3.940 16 O -0.565 6.565 17 N -0.738 5.738 18 C -0.251 4.251 19 H 0.091 0.909 20 C 0.012 3.988 21 N -0.930 5.930 22 Si 0.878 3.122 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.274 1.274 26 N -0.312 5.312 27 O 0.143 5.857 28 N -0.261 5.261 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.183 0.817 33 H 0.160 0.840 34 H 0.186 0.814 35 H 0.416 0.584 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.055 0.945 39 H 0.032 0.968 40 H 0.366 0.634 41 H 0.366 0.634 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.888 5.971 6.773 26.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.150 5.150 3 C -0.087 4.087 4 C -0.273 4.273 5 C -0.022 4.022 6 C -0.034 4.034 7 C -0.164 4.164 8 C -0.182 4.182 9 C 0.378 3.622 10 O -0.407 6.407 11 N -0.351 5.351 12 C -0.010 4.010 13 C 0.060 3.940 14 H 0.094 0.906 15 C -0.021 4.021 16 O -0.369 6.369 17 N -0.382 5.382 18 C -0.380 4.380 19 H 0.109 0.891 20 C -0.184 4.184 21 N -0.577 5.577 22 Si 0.708 3.292 23 H -0.209 1.209 24 H -0.217 1.217 25 H -0.200 1.200 26 N -0.009 5.009 27 O 0.064 5.936 28 N -0.087 5.087 29 H 0.097 0.903 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.200 0.800 33 H 0.178 0.822 34 H 0.203 0.797 35 H 0.253 0.747 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.073 0.927 39 H 0.050 0.950 40 H 0.211 0.789 41 H 0.199 0.801 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -25.065 5.199 6.785 26.483 hybrid contribution -0.189 0.404 -1.153 1.237 sum -25.254 5.603 5.632 26.474 Atomic orbital electron populations 1.21963 0.73373 1.04936 1.03842 1.48544 1.06894 1.03363 1.56245 1.22548 0.90708 0.93677 1.01797 1.21605 0.97838 0.93278 1.14551 1.18788 0.88715 0.91747 1.02990 1.20792 0.84425 0.91512 1.06672 1.22621 0.96682 0.93645 1.03411 1.23466 0.92502 0.94362 1.07914 1.16813 0.82704 0.85190 0.77528 1.90775 1.61063 1.38122 1.50721 1.45932 1.05645 1.11302 1.72189 1.21736 0.94059 0.82454 1.02754 1.20580 0.90155 0.89969 0.93273 0.90584 1.22987 0.98565 0.94518 0.86046 1.86525 1.70416 1.32745 1.47173 1.42736 1.23288 1.55700 1.16433 1.19030 0.95347 1.20651 1.02985 0.89103 1.24620 0.96737 0.99211 0.97862 1.69694 1.21286 1.34455 1.32267 0.86636 0.80418 0.78095 0.84044 1.20906 1.21717 1.19987 1.74295 1.16237 0.95588 1.14768 1.84917 1.12624 1.30356 1.65737 1.77680 0.99827 1.07390 1.23819 0.90304 0.88927 0.88974 0.80041 0.82193 0.79681 0.74654 0.90124 0.91135 0.92660 0.95026 0.78851 0.80074 0.92981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.32 11.46 59.85 0.69 1.00 16 2 N -0.37 -2.84 4.01 -68.21 -0.27 -3.11 16 3 C 0.06 0.37 11.46 -17.27 -0.20 0.17 16 4 C -0.24 -2.17 10.77 -39.67 -0.43 -2.59 16 5 C 0.14 1.64 7.11 -82.88 -0.59 1.06 16 6 C 0.03 0.40 7.35 -36.19 -0.27 0.14 16 7 C -0.14 -1.96 10.94 -38.73 -0.42 -2.39 16 8 C -0.02 -0.40 7.18 -82.62 -0.59 -0.99 16 9 C 0.59 10.70 7.85 -12.10 -0.09 10.60 16 10 O -0.53 -10.46 16.95 5.38 0.09 -10.37 16 11 N -0.70 -12.49 5.39 -61.09 -0.33 -12.82 16 12 C 0.11 1.98 5.12 -4.04 -0.02 1.96 16 13 C 0.17 3.19 2.84 -67.93 -0.19 3.00 16 14 H 0.08 1.38 8.08 -51.93 -0.42 0.96 16 15 C 0.06 1.00 6.86 37.16 0.25 1.26 16 16 O -0.56 -9.57 12.64 -35.23 -0.45 -10.02 16 17 N -0.74 -17.15 4.31 -53.43 -0.23 -17.38 16 18 C -0.25 -6.85 10.41 -15.06 -0.16 -7.01 16 19 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 20 C 0.01 0.36 5.50 -17.43 -0.10 0.26 16 21 N -0.93 -28.94 13.97 55.49 0.78 -28.16 16 22 Si 0.88 22.66 27.74 -169.99 -4.71 17.94 16 23 H -0.28 -7.28 7.11 56.52 0.40 -6.88 16 24 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 25 H -0.27 -6.92 6.52 56.52 0.37 -6.55 16 26 N -0.31 -5.12 11.82 33.35 0.39 -4.72 16 27 O 0.14 2.05 11.20 16.08 0.18 2.23 16 28 N -0.26 -2.97 12.60 33.36 0.42 -2.55 16 29 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 30 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.09 0.03 8.14 -51.93 -0.42 -0.39 16 32 H 0.18 0.39 8.06 -52.49 -0.42 -0.03 16 33 H 0.16 1.16 8.06 -52.49 -0.42 0.74 16 34 H 0.19 2.37 8.06 -52.49 -0.42 1.94 16 35 H 0.42 7.74 7.89 -40.82 -0.32 7.41 16 36 H 0.08 1.53 7.39 -51.93 -0.38 1.14 16 37 H 0.07 1.10 8.14 -51.92 -0.42 0.68 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.37 4.40 9.12 45.56 0.42 4.82 16 41 H 0.37 8.87 5.66 -40.82 -0.23 8.64 16 42 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 LS Contribution 373.73 15.07 5.63 5.63 Total: -1.00 -36.77 373.73 -4.96 -41.72 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: -4.34 Total: 15.14 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: -2.12 Total: 6.47 kcal Atomic # 7 Polarization: -69.50 SS G_CDS: 0.76 Total: -68.74 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -0.17 Total: -18.16 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.71 Total: 17.94 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.77 -4.96 -41.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717765741.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.063 kcal (2) G-P(sol) polarization free energy of solvation -36.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds