Wall clock time and date at job start Tue Mar 31 2020 18:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35085 * 125.90688 * 2 1 4 4 C 1.35012 * 108.03517 * 180.02562 * 3 2 1 5 5 C 1.41038 * 107.84023 * 0.02562 * 4 3 2 6 6 C 1.47860 * 126.06547 * 180.02562 * 5 4 3 7 7 C 1.36735 * 126.81686 * 180.30648 * 6 5 4 8 8 C 1.41892 * 103.81386 * 180.13379 * 7 6 5 9 9 C 1.48351 * 126.83896 * 179.88232 * 8 7 6 10 10 O 1.21486 * 119.99918 * 359.71770 * 9 8 7 11 11 N 1.34776 * 119.99670 * 179.71195 * 9 8 7 12 12 C 1.46500 * 119.99923 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.47226 * 180.02562 * 12 11 9 14 14 H 1.09004 * 109.47434 * 64.99688 * 13 12 11 15 15 C 1.52997 * 109.47114 * 184.99495 * 13 12 11 16 16 O 1.42903 * 109.47059 * 55.00009 * 15 13 12 17 17 N 1.46498 * 109.46963 * 304.99288 * 13 12 11 18 18 C 1.36943 * 119.99752 * 154.72381 * 17 13 12 19 19 H 1.08002 * 119.99793 * 0.27665 * 18 17 13 20 20 C 1.38811 * 120.00012 * 180.27737 * 18 17 13 21 21 N 1.31611 * 120.00081 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 119.99814 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47483 * 90.00178 * 22 20 18 24 24 H 1.48498 * 109.47011 * 210.00042 * 22 20 18 25 25 H 1.48502 * 109.47495 * 329.99664 * 22 20 18 26 26 N 1.31094 * 106.31448 * 359.62763 * 8 7 6 27 27 O 1.20877 * 111.76889 * 0.23970 * 26 8 7 28 28 N 1.31817 * 107.86992 * 0.26462 * 5 4 3 29 29 H 1.08993 * 109.47795 * 89.99756 * 1 2 3 30 30 H 1.09001 * 109.46695 * 209.99359 * 1 2 3 31 31 H 1.09004 * 109.47623 * 329.98944 * 1 2 3 32 32 H 1.08000 * 125.99091 * 0.02959 * 3 2 1 33 33 H 1.07997 * 126.08126 * 180.02562 * 4 3 2 34 34 H 1.07994 * 128.09103 * 0.02562 * 7 6 5 35 35 H 0.96998 * 119.99957 * 0.02562 * 11 9 8 36 36 H 1.08995 * 109.47176 * 59.99567 * 12 11 9 37 37 H 1.09008 * 109.46559 * 299.99697 * 12 11 9 38 38 H 1.08997 * 109.47241 * 175.00015 * 15 13 12 39 39 H 1.09002 * 109.47280 * 295.00109 * 15 13 12 40 40 H 0.96700 * 113.99965 * 180.02562 * 16 15 13 41 41 H 0.97001 * 120.00384 * 335.00737 * 17 13 12 42 42 H 0.97008 * 120.00329 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2572 1.0942 0.0000 4 6 3.5422 0.6798 -0.0006 5 6 3.5414 -0.7306 -0.0015 6 6 4.7361 -1.6017 -0.0019 7 6 4.7533 -2.9689 -0.0087 8 6 6.1353 -3.2904 -0.0024 9 6 6.7327 -4.6483 -0.0034 10 8 6.0142 -5.6280 -0.0050 11 7 8.0724 -4.7951 -0.0027 12 6 8.6624 -6.1360 -0.0042 13 6 10.1881 -6.0220 -0.0024 14 1 10.5171 -5.5633 0.9301 15 6 10.8039 -7.4168 -0.1296 16 8 10.2823 -8.0636 -1.2922 17 7 10.6172 -5.1939 -1.1321 18 6 11.8098 -4.5231 -1.0752 19 1 12.4360 -4.6083 -0.1994 20 6 12.2138 -3.7339 -2.1433 21 7 13.3602 -3.0897 -2.0889 22 14 11.1303 -3.5861 -3.6577 23 1 10.1963 -2.4440 -3.4887 24 1 11.9801 -3.3577 -4.8539 25 1 10.3532 -4.8391 -3.8347 26 7 6.7791 -2.1484 -0.0011 27 8 6.0213 -1.2066 -0.0009 28 7 2.2866 -1.1344 -0.0073 29 1 -0.3634 0.0000 -1.0275 30 1 -0.3633 -0.8901 0.5137 31 1 -0.3634 0.8899 0.5140 32 1 1.9216 2.1207 0.0005 33 1 4.4154 1.3153 -0.0003 34 1 3.9118 -3.6457 -0.0153 35 1 8.6460 -4.0129 -0.0011 36 1 8.3389 -6.6742 -0.8951 37 1 8.3377 -6.6768 0.8849 38 1 11.8868 -7.3292 -0.2176 39 1 10.5576 -8.0048 0.7546 40 1 10.6296 -8.9546 -1.4358 41 1 10.0548 -5.1173 -1.9186 42 1 13.6427 -2.5384 -2.8354 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717765741.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:26 Heat of formation + Delta-G solvation = 53.532223 kcal Electronic energy + Delta-G solvation = -27774.377087 eV Core-core repulsion = 23566.704340 eV Total energy + Delta-G solvation = -4207.672746 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -46.30385 -42.15503 -40.89388 -38.76851 -36.52649 -35.46299 -35.42890 -34.89779 -33.43986 -32.58186 -31.18488 -30.70647 -27.72348 -27.48219 -25.52766 -24.95738 -24.47405 -22.82671 -21.86424 -21.77672 -20.90802 -19.88197 -19.08486 -19.04295 -18.30730 -18.04085 -17.60891 -17.25392 -16.70516 -16.43360 -16.24903 -16.10772 -15.68700 -15.10040 -15.03332 -14.95891 -14.68161 -14.66521 -14.47933 -14.27487 -13.78089 -13.74057 -13.27868 -13.25479 -12.93317 -12.89235 -12.69082 -12.42149 -11.93707 -11.88998 -11.82427 -11.74572 -11.58746 -11.56624 -11.06431 -10.76554 -10.27280 -10.10838 -9.54784 -9.36237 -8.03926 -5.35967 -0.37594 0.12962 1.01589 1.07874 1.34920 1.36760 1.42589 1.73269 1.84038 1.95682 2.00780 2.45283 2.70586 3.20848 3.28232 3.43515 3.57458 3.67115 3.67641 3.83820 3.97119 4.08706 4.16148 4.32995 4.47935 4.48438 4.57789 4.60571 4.64484 4.73702 4.74258 4.78259 4.90209 4.93627 5.10879 5.23193 5.34460 5.75210 6.03238 6.18233 6.20481 6.41820 6.74157 6.87096 7.02005 7.06943 7.80120 7.98397 9.17093 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014731 B = 0.002630 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.320390 B =10643.377746 C =11955.153158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.361 5.361 3 C 0.078 3.922 4 C -0.264 4.264 5 C 0.112 3.888 6 C 0.049 3.951 7 C -0.149 4.149 8 C -0.039 4.039 9 C 0.597 3.403 10 O -0.551 6.551 11 N -0.700 5.700 12 C 0.124 3.876 13 C 0.163 3.837 14 H 0.082 0.918 15 C 0.068 3.932 16 O -0.584 6.584 17 N -0.742 5.742 18 C -0.221 4.221 19 H 0.070 0.930 20 C -0.052 4.052 21 N -0.977 5.977 22 Si 0.938 3.062 23 H -0.283 1.283 24 H -0.296 1.296 25 H -0.265 1.265 26 N -0.334 5.334 27 O 0.150 5.850 28 N -0.295 5.295 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.128 0.872 32 H 0.231 0.769 33 H 0.170 0.830 34 H 0.194 0.806 35 H 0.413 0.587 36 H 0.068 0.932 37 H 0.094 0.906 38 H 0.037 0.963 39 H 0.073 0.927 40 H 0.389 0.611 41 H 0.362 0.638 42 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.809 6.630 7.116 29.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.145 5.145 3 C -0.068 4.068 4 C -0.293 4.293 5 C -0.051 4.051 6 C -0.016 4.016 7 C -0.173 4.173 8 C -0.196 4.196 9 C 0.381 3.619 10 O -0.428 6.428 11 N -0.351 5.351 12 C 0.000 4.000 13 C 0.055 3.945 14 H 0.100 0.900 15 C -0.013 4.013 16 O -0.391 6.391 17 N -0.385 5.385 18 C -0.352 4.352 19 H 0.088 0.912 20 C -0.244 4.244 21 N -0.628 5.628 22 Si 0.767 3.233 23 H -0.209 1.209 24 H -0.223 1.223 25 H -0.191 1.191 26 N -0.031 5.031 27 O 0.070 5.930 28 N -0.124 5.124 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.146 0.854 32 H 0.247 0.753 33 H 0.188 0.812 34 H 0.211 0.789 35 H 0.249 0.751 36 H 0.086 0.914 37 H 0.112 0.888 38 H 0.055 0.945 39 H 0.091 0.909 40 H 0.237 0.763 41 H 0.195 0.805 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -28.013 5.781 7.154 29.485 hybrid contribution 0.537 0.231 -1.151 1.291 sum -27.476 6.012 6.003 28.759 Atomic orbital electron populations 1.22387 0.70835 1.06646 1.05194 1.48990 1.08304 1.02825 1.54426 1.23263 0.89554 0.95177 0.98806 1.21902 0.99657 0.92174 1.15533 1.18831 0.88240 0.92794 1.05195 1.21092 0.84452 0.91565 1.04515 1.22700 0.95967 0.94294 1.04360 1.23365 0.93422 0.93742 1.09104 1.16957 0.82501 0.85624 0.76856 1.90752 1.61391 1.38937 1.51758 1.45966 1.05691 1.11331 1.72133 1.21663 0.92755 0.82340 1.03228 1.20869 0.91213 0.90650 0.91790 0.89990 1.22765 0.97028 0.93717 0.87765 1.86466 1.70735 1.34561 1.47344 1.42733 1.21877 1.56267 1.17623 1.19024 0.95715 1.18965 1.01464 0.91181 1.25244 0.98106 1.00210 1.00828 1.69831 1.23381 1.36416 1.33163 0.85663 0.78681 0.78175 0.80750 1.20914 1.22279 1.19066 1.74276 1.17070 0.95880 1.15881 1.84875 1.13164 1.29726 1.65240 1.77591 1.00122 1.09746 1.24902 0.89084 0.89201 0.85354 0.75257 0.81217 0.78878 0.75102 0.91362 0.88801 0.94496 0.90898 0.76273 0.80545 0.93414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.28 11.46 127.77 1.46 1.74 16 2 N -0.36 -4.64 4.01 -369.71 -1.48 -6.13 16 3 C 0.08 0.74 11.46 83.45 0.96 1.69 16 4 C -0.26 -4.21 10.77 22.21 0.24 -3.97 16 5 C 0.11 2.52 7.11 42.38 0.30 2.82 16 6 C 0.05 1.29 7.35 24.47 0.18 1.47 16 7 C -0.15 -4.25 10.94 22.82 0.25 -4.00 16 8 C -0.04 -1.31 7.18 42.85 0.31 -1.00 16 9 C 0.60 21.47 7.85 86.94 0.68 22.15 16 10 O -0.55 -21.59 16.95 -3.67 -0.06 -21.65 16 11 N -0.70 -24.77 5.39 -465.49 -2.51 -27.28 16 12 C 0.12 4.13 5.12 86.38 0.44 4.57 16 13 C 0.16 5.90 2.84 44.99 0.13 6.02 16 14 H 0.08 2.88 8.08 -2.39 -0.02 2.86 16 15 C 0.07 2.13 6.86 71.98 0.49 2.62 16 16 O -0.58 -18.54 12.64 -148.98 -1.88 -20.43 16 17 N -0.74 -34.07 4.31 -322.94 -1.39 -35.46 16 18 C -0.22 -12.17 10.41 84.03 0.87 -11.29 16 19 H 0.07 4.12 8.06 -2.91 -0.02 4.09 16 20 C -0.05 -3.05 5.50 84.86 0.47 -2.58 16 21 N -0.98 -62.23 13.97 21.65 0.30 -61.93 16 22 Si 0.94 47.54 27.74 68.60 1.90 49.45 16 23 H -0.28 -14.19 7.11 99.48 0.71 -13.48 16 24 H -0.30 -15.13 7.11 99.48 0.71 -14.43 16 25 H -0.27 -12.88 6.52 99.48 0.65 -12.23 16 26 N -0.33 -11.12 11.82 -48.99 -0.58 -11.70 16 27 O 0.15 4.32 11.20 67.73 0.76 5.08 16 28 N -0.30 -6.43 12.60 -48.36 -0.61 -7.04 16 29 H 0.09 0.12 8.14 -2.39 -0.02 0.10 16 30 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.13 -0.50 8.14 -2.38 -0.02 -0.51 16 32 H 0.23 -0.25 8.06 -2.91 -0.02 -0.27 16 33 H 0.17 2.20 8.06 -2.91 -0.02 2.18 16 34 H 0.19 5.04 8.06 -2.91 -0.02 5.01 16 35 H 0.41 15.35 7.89 -92.71 -0.73 14.62 16 36 H 0.07 2.50 7.39 -2.39 -0.02 2.48 16 37 H 0.09 2.72 8.14 -2.38 -0.02 2.71 16 38 H 0.04 1.29 8.14 -2.39 -0.02 1.28 16 39 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.39 8.40 9.12 -74.06 -0.68 7.72 16 41 H 0.36 17.25 5.66 -92.71 -0.52 16.72 16 42 H 0.26 15.74 8.31 -92.70 -0.77 14.97 16 Total: -1.00 -81.32 373.73 0.35 -80.98 By element: Atomic # 1 Polarization: 36.75 SS G_CDS: -0.89 Total: 35.86 kcal Atomic # 6 Polarization: 13.46 SS G_CDS: 6.79 Total: 20.25 kcal Atomic # 7 Polarization: -143.27 SS G_CDS: -6.27 Total: -149.54 kcal Atomic # 8 Polarization: -35.81 SS G_CDS: -1.19 Total: -37.00 kcal Atomic # 14 Polarization: 47.54 SS G_CDS: 1.90 Total: 49.45 kcal Total: -81.32 0.35 -80.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717765741.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.508 kcal (2) G-P(sol) polarization free energy of solvation -81.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds