Wall clock time and date at job start Tue Mar 31 2020 18:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34463 * 125.76567 * 2 1 4 4 C 1.38066 * 107.38851 * 180.14327 * 3 2 1 5 5 C 1.47359 * 126.41171 * 179.87124 * 4 3 2 6 6 O 1.34254 * 127.19537 * 312.13323 * 5 4 3 7 7 N 1.20741 * 111.95178 * 180.32712 * 6 5 4 8 8 C 1.29870 * 112.80920 * 359.71289 * 7 6 5 9 9 C 1.39927 * 127.19352 * 131.99292 * 5 4 3 10 10 C 1.46909 * 128.40019 * 359.97382 * 9 5 4 11 11 O 1.21671 * 120.00081 * 354.24736 * 10 9 5 12 12 N 1.34781 * 120.00191 * 174.24173 * 10 9 5 13 13 C 1.46495 * 119.99748 * 180.02562 * 12 10 9 14 14 C 1.53008 * 109.46868 * 180.02562 * 13 12 10 15 15 H 1.09002 * 109.47029 * 65.00158 * 14 13 12 16 16 C 1.53009 * 109.47175 * 184.99805 * 14 13 12 17 17 O 1.42901 * 109.46457 * 54.99914 * 16 14 13 18 18 N 1.46492 * 109.47022 * 304.99651 * 14 13 12 19 19 C 1.36943 * 119.99860 * 154.99750 * 18 14 13 20 20 H 1.07997 * 119.99698 * 0.02562 * 19 18 14 21 21 C 1.38817 * 119.99977 * 180.02562 * 19 18 14 22 22 N 1.31616 * 119.99536 * 359.73162 * 21 19 18 23 23 Si 1.86794 * 119.99682 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47108 * 179.72798 * 23 21 19 25 25 H 1.48504 * 109.47420 * 299.72495 * 23 21 19 26 26 H 1.48504 * 109.47278 * 59.72958 * 23 21 19 27 27 C 1.41307 * 107.18285 * 359.61418 * 4 3 2 28 28 N 1.30484 * 108.05203 * 0.23442 * 27 4 3 29 29 H 1.09006 * 109.46800 * 270.31442 * 1 2 3 30 30 H 1.09004 * 109.47650 * 30.31303 * 1 2 3 31 31 H 1.08994 * 109.47371 * 150.31538 * 1 2 3 32 32 H 1.07997 * 126.30526 * 359.97438 * 3 2 1 33 33 H 1.08009 * 126.78618 * 179.97438 * 8 7 6 34 34 H 0.96989 * 120.00125 * 0.02562 * 12 10 9 35 35 H 1.08999 * 109.47401 * 60.00216 * 13 12 10 36 36 H 1.09000 * 109.47684 * 299.99849 * 13 12 10 37 37 H 1.08994 * 109.46733 * 175.00084 * 16 14 13 38 38 H 1.09000 * 109.46999 * 295.00604 * 16 14 13 39 39 H 0.96710 * 113.99096 * 179.97438 * 17 16 14 40 40 H 0.96996 * 120.00261 * 335.00357 * 18 14 13 41 41 H 0.96992 * 120.00683 * 0.26826 * 22 21 19 42 42 H 1.07988 * 125.97737 * 180.26362 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2509 1.0911 0.0000 4 6 3.5611 0.6558 -0.0033 5 6 4.7651 1.5054 -0.0072 6 8 5.0124 2.5590 -0.8016 7 7 6.0903 3.0530 -0.5738 8 6 6.7303 2.4471 0.3801 9 6 5.8884 1.3844 0.8183 10 6 6.1414 0.3969 1.8762 11 8 5.2702 -0.3907 2.1941 12 7 7.3386 0.3632 2.4944 13 6 7.5909 -0.6219 3.5489 14 6 9.0146 -0.4460 4.0810 15 1 9.1034 0.5257 4.5669 16 6 9.3212 -1.5521 5.0928 17 8 9.0920 -2.8268 4.4890 18 7 9.9648 -0.5245 2.9688 19 6 11.1867 0.0857 3.0678 20 1 11.4500 0.6245 3.9660 21 6 12.0869 0.0117 2.0137 22 7 11.7680 -0.6494 0.9212 23 14 13.7539 0.8436 2.1490 24 1 14.5252 0.6124 0.9013 25 1 13.5642 2.3026 2.3505 26 1 14.4976 0.2771 3.3029 27 6 3.5317 -0.7570 0.0038 28 7 2.2829 -1.1354 0.0058 29 1 -0.3633 0.0056 1.0277 30 1 -0.3634 0.8872 -0.5187 31 1 -0.3634 -0.8927 -0.5089 32 1 1.9184 2.1186 -0.0004 33 1 7.7076 2.6987 0.7648 34 1 8.0330 0.9912 2.2412 35 1 7.4761 -1.6267 3.1424 36 1 6.8791 -0.4751 4.3612 37 1 10.3629 -1.4800 5.4052 38 1 8.6726 -1.4397 5.9616 39 1 9.2672 -3.5764 5.0743 40 1 9.7284 -1.0087 2.1623 41 1 10.9025 -1.0816 0.8511 42 1 4.3922 -1.4094 0.0075 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725538265.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:30 Heat of formation + Delta-G solvation = 76.956872 kcal Electronic energy + Delta-G solvation = -28562.331208 eV Core-core repulsion = 24355.674231 eV Total energy + Delta-G solvation = -4206.656977 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.86223 -41.30042 -39.26501 -37.20816 -35.03063 -34.06685 -33.96770 -33.49093 -32.32460 -31.36225 -29.67272 -28.15368 -27.07881 -25.87666 -24.05882 -23.42418 -22.86499 -21.25368 -20.94863 -20.33278 -19.91664 -18.30344 -17.71455 -17.58411 -17.18709 -16.71298 -16.13158 -15.73894 -15.71203 -15.03253 -14.81859 -14.62000 -14.27548 -13.96955 -13.70386 -13.57730 -13.38659 -13.35683 -13.16229 -13.07450 -12.98729 -12.64692 -11.88423 -11.69365 -11.48128 -11.02394 -10.87959 -10.77351 -10.48525 -10.43161 -10.03816 -9.89062 -9.81545 -9.63633 -9.51145 -9.20369 -9.00078 -8.69999 -8.38068 -7.12226 -6.14780 -3.16861 0.82258 1.66375 1.91936 2.13730 2.51492 2.98283 3.46648 3.47800 3.50301 3.54948 3.68714 4.17685 4.32011 4.47585 4.60429 4.64704 4.73565 4.78571 4.84905 5.00182 5.05366 5.18610 5.30028 5.34994 5.43263 5.52960 5.58557 5.61995 5.81762 5.87271 5.94357 5.95493 6.26371 6.35133 6.39226 6.60200 6.64271 6.80335 7.43921 7.72084 7.83737 8.12269 8.17786 8.48321 8.70810 9.14988 10.01820 10.17142 11.32692 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014202 B = 0.003037 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.018999 B = 9217.210676 C =10583.097773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.367 5.367 3 C 0.098 3.902 4 C -0.188 4.188 5 C 0.123 3.877 6 O 0.103 5.897 7 N -0.367 5.367 8 C 0.034 3.966 9 C -0.245 4.245 10 C 0.591 3.409 11 O -0.539 6.539 12 N -0.706 5.706 13 C 0.120 3.880 14 C 0.171 3.829 15 H 0.067 0.933 16 C 0.060 3.940 17 O -0.562 6.562 18 N -0.724 5.724 19 C -0.340 4.340 20 H 0.064 0.936 21 C -0.039 4.039 22 N -0.937 5.937 23 Si 1.078 2.922 24 H -0.285 1.285 25 H -0.295 1.295 26 H -0.296 1.296 27 C 0.126 3.874 28 N -0.299 5.299 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.184 0.816 33 H 0.201 0.799 34 H 0.408 0.592 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.049 0.951 38 H 0.028 0.972 39 H 0.365 0.635 40 H 0.372 0.628 41 H 0.258 0.742 42 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.540 4.362 1.394 21.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.146 5.146 3 C -0.053 4.053 4 C -0.201 4.201 5 C 0.056 3.944 6 O 0.042 5.958 7 N -0.072 5.072 8 C -0.146 4.146 9 C -0.253 4.253 10 C 0.377 3.623 11 O -0.417 6.417 12 N -0.357 5.357 13 C -0.004 4.004 14 C 0.060 3.940 15 H 0.085 0.915 16 C -0.022 4.022 17 O -0.365 6.365 18 N -0.367 5.367 19 C -0.471 4.471 20 H 0.082 0.918 21 C -0.238 4.238 22 N -0.581 5.581 23 Si 0.909 3.091 24 H -0.211 1.211 25 H -0.222 1.222 26 H -0.224 1.224 27 C -0.061 4.061 28 N -0.119 5.119 29 H 0.096 0.904 30 H 0.108 0.892 31 H 0.111 0.889 32 H 0.201 0.799 33 H 0.218 0.782 34 H 0.244 0.756 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.046 0.954 39 H 0.210 0.790 40 H 0.206 0.794 41 H 0.069 0.931 42 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -20.489 4.645 -0.292 21.011 hybrid contribution -0.116 -0.294 1.795 1.822 sum -20.605 4.351 1.503 21.113 Atomic orbital electron populations 1.21944 0.73589 1.04824 1.03784 1.48294 1.07074 1.03828 1.55379 1.22912 0.89958 0.93736 0.98686 1.17651 0.88253 0.92005 1.22225 1.21985 0.94079 0.88575 0.89783 1.84872 1.28339 1.34909 1.47719 1.73529 0.94337 1.20941 1.18352 1.25115 1.01867 0.93319 0.94281 1.21449 0.96704 1.02872 1.04230 1.16687 0.82630 0.82525 0.80443 1.90804 1.44613 1.41041 1.65286 1.45796 1.14357 1.37144 1.38384 1.21581 0.96643 0.92581 0.89614 1.20531 0.87976 0.95437 0.90057 0.91546 1.23017 0.99037 0.84945 0.95189 1.86550 1.91353 1.15261 1.43356 1.42370 1.15084 1.64184 1.15089 1.19999 0.93713 1.30306 1.03091 0.91804 1.25733 1.03740 1.01103 0.93197 1.70860 1.23803 1.35699 1.27770 0.83271 0.75235 0.75108 0.75490 1.21061 1.22237 1.22366 1.23929 0.94955 0.92854 0.94410 1.77278 1.01584 1.07276 1.25727 0.90369 0.89183 0.88873 0.79861 0.78239 0.75581 0.90447 0.91856 0.93245 0.95402 0.79027 0.79419 0.93103 0.79287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.50 11.44 59.85 0.68 1.18 16 2 N -0.37 -3.69 3.99 -67.54 -0.27 -3.96 16 3 C 0.10 0.95 11.51 -16.46 -0.19 0.77 16 4 C -0.19 -2.44 5.56 -105.08 -0.58 -3.02 16 5 C 0.12 1.72 7.39 -35.24 -0.26 1.46 16 6 O 0.10 1.41 11.17 16.65 0.19 1.60 16 7 N -0.37 -5.42 11.97 30.85 0.37 -5.05 16 8 C 0.03 0.48 11.68 -16.75 -0.20 0.29 16 9 C -0.24 -3.72 6.36 -104.12 -0.66 -4.38 16 10 C 0.59 10.00 7.80 -12.75 -0.10 9.90 16 11 O -0.54 -10.14 14.56 5.21 0.08 -10.06 16 12 N -0.71 -11.81 5.38 -61.54 -0.33 -12.14 16 13 C 0.12 2.08 5.12 -4.04 -0.02 2.06 16 14 C 0.17 3.19 2.84 -67.93 -0.19 3.00 16 15 H 0.07 1.20 8.08 -51.93 -0.42 0.78 16 16 C 0.06 1.02 6.86 37.16 0.25 1.28 16 17 O -0.56 -9.85 12.64 -35.23 -0.45 -10.30 16 18 N -0.72 -16.86 4.51 -53.42 -0.24 -17.10 16 19 C -0.34 -8.91 9.93 -15.05 -0.15 -9.05 16 20 H 0.06 1.63 7.83 -52.49 -0.41 1.22 16 21 C -0.04 -1.08 5.50 -17.43 -0.10 -1.18 16 22 N -0.94 -28.12 13.70 55.49 0.76 -27.36 16 23 Si 1.08 25.01 29.92 -169.99 -5.09 19.92 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 25 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.30 -6.62 7.11 56.52 0.40 -6.22 16 27 C 0.13 1.77 10.39 -16.96 -0.18 1.59 16 28 N -0.30 -4.04 12.50 30.87 0.39 -3.65 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.18 1.06 8.06 -52.49 -0.42 0.64 16 33 H 0.20 2.52 7.77 -52.48 -0.41 2.11 16 34 H 0.41 6.84 7.39 -40.82 -0.30 6.54 16 35 H 0.08 1.50 7.39 -51.93 -0.38 1.11 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.36 4.62 9.12 45.56 0.42 5.03 16 40 H 0.37 9.40 6.63 -40.82 -0.27 9.13 16 41 H 0.26 7.72 6.77 -40.82 -0.28 7.44 16 42 H 0.19 2.68 7.81 -52.49 -0.41 2.27 16 LS Contribution 369.74 15.07 5.57 5.57 Total: -1.00 -35.45 369.74 -4.93 -40.38 By element: Atomic # 1 Polarization: 22.49 SS G_CDS: -4.22 Total: 18.27 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: -1.69 Total: 3.88 kcal Atomic # 7 Polarization: -69.93 SS G_CDS: 0.67 Total: -69.25 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: -0.18 Total: -18.76 kcal Atomic # 14 Polarization: 25.01 SS G_CDS: -5.09 Total: 19.92 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.45 -4.93 -40.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725538265.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.339 kcal (2) G-P(sol) polarization free energy of solvation -35.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds