Wall clock time and date at job start Tue Mar 31 2020 18:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34463 * 125.76567 * 2 1 4 4 C 1.38066 * 107.38851 * 180.14327 * 3 2 1 5 5 C 1.47359 * 126.41171 * 179.87124 * 4 3 2 6 6 O 1.34254 * 127.19537 * 312.13323 * 5 4 3 7 7 N 1.20741 * 111.95178 * 180.32712 * 6 5 4 8 8 C 1.29870 * 112.80920 * 359.71289 * 7 6 5 9 9 C 1.39927 * 127.19352 * 131.99292 * 5 4 3 10 10 C 1.46909 * 128.40019 * 359.97382 * 9 5 4 11 11 O 1.21671 * 120.00081 * 354.24736 * 10 9 5 12 12 N 1.34781 * 120.00191 * 174.24173 * 10 9 5 13 13 C 1.46495 * 119.99748 * 180.02562 * 12 10 9 14 14 C 1.53008 * 109.46868 * 180.02562 * 13 12 10 15 15 H 1.09002 * 109.47029 * 65.00158 * 14 13 12 16 16 C 1.53009 * 109.47175 * 184.99805 * 14 13 12 17 17 O 1.42901 * 109.46457 * 54.99914 * 16 14 13 18 18 N 1.46492 * 109.47022 * 304.99651 * 14 13 12 19 19 C 1.36943 * 119.99860 * 154.99750 * 18 14 13 20 20 H 1.07997 * 119.99698 * 0.02562 * 19 18 14 21 21 C 1.38817 * 119.99977 * 180.02562 * 19 18 14 22 22 N 1.31616 * 119.99536 * 359.73162 * 21 19 18 23 23 Si 1.86794 * 119.99682 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47108 * 179.72798 * 23 21 19 25 25 H 1.48504 * 109.47420 * 299.72495 * 23 21 19 26 26 H 1.48504 * 109.47278 * 59.72958 * 23 21 19 27 27 C 1.41307 * 107.18285 * 359.61418 * 4 3 2 28 28 N 1.30484 * 108.05203 * 0.23442 * 27 4 3 29 29 H 1.09006 * 109.46800 * 270.31442 * 1 2 3 30 30 H 1.09004 * 109.47650 * 30.31303 * 1 2 3 31 31 H 1.08994 * 109.47371 * 150.31538 * 1 2 3 32 32 H 1.07997 * 126.30526 * 359.97438 * 3 2 1 33 33 H 1.08009 * 126.78618 * 179.97438 * 8 7 6 34 34 H 0.96989 * 120.00125 * 0.02562 * 12 10 9 35 35 H 1.08999 * 109.47401 * 60.00216 * 13 12 10 36 36 H 1.09000 * 109.47684 * 299.99849 * 13 12 10 37 37 H 1.08994 * 109.46733 * 175.00084 * 16 14 13 38 38 H 1.09000 * 109.46999 * 295.00604 * 16 14 13 39 39 H 0.96710 * 113.99096 * 179.97438 * 17 16 14 40 40 H 0.96996 * 120.00261 * 335.00357 * 18 14 13 41 41 H 0.96992 * 120.00683 * 0.26826 * 22 21 19 42 42 H 1.07988 * 125.97737 * 180.26362 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2509 1.0911 0.0000 4 6 3.5611 0.6558 -0.0033 5 6 4.7651 1.5054 -0.0072 6 8 5.0124 2.5590 -0.8016 7 7 6.0903 3.0530 -0.5738 8 6 6.7303 2.4471 0.3801 9 6 5.8884 1.3844 0.8183 10 6 6.1414 0.3969 1.8762 11 8 5.2702 -0.3907 2.1941 12 7 7.3386 0.3632 2.4944 13 6 7.5909 -0.6219 3.5489 14 6 9.0146 -0.4460 4.0810 15 1 9.1034 0.5257 4.5669 16 6 9.3212 -1.5521 5.0928 17 8 9.0920 -2.8268 4.4890 18 7 9.9648 -0.5245 2.9688 19 6 11.1867 0.0857 3.0678 20 1 11.4500 0.6245 3.9660 21 6 12.0869 0.0117 2.0137 22 7 11.7680 -0.6494 0.9212 23 14 13.7539 0.8436 2.1490 24 1 14.5252 0.6124 0.9013 25 1 13.5642 2.3026 2.3505 26 1 14.4976 0.2771 3.3029 27 6 3.5317 -0.7570 0.0038 28 7 2.2829 -1.1354 0.0058 29 1 -0.3633 0.0056 1.0277 30 1 -0.3634 0.8872 -0.5187 31 1 -0.3634 -0.8927 -0.5089 32 1 1.9184 2.1186 -0.0004 33 1 7.7076 2.6987 0.7648 34 1 8.0330 0.9912 2.2412 35 1 7.4761 -1.6267 3.1424 36 1 6.8791 -0.4751 4.3612 37 1 10.3629 -1.4800 5.4052 38 1 8.6726 -1.4397 5.9616 39 1 9.2672 -3.5764 5.0743 40 1 9.7284 -1.0087 2.1623 41 1 10.9025 -1.0816 0.8511 42 1 4.3922 -1.4094 0.0075 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725538265.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:29 Heat of formation + Delta-G solvation = 48.070665 kcal Electronic energy + Delta-G solvation = -28563.583808 eV Core-core repulsion = 24355.674231 eV Total energy + Delta-G solvation = -4207.909577 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.98440 -42.17532 -40.63494 -38.69476 -36.53632 -35.47318 -35.09541 -34.64004 -33.32694 -33.04632 -30.64006 -29.84147 -27.85349 -27.14089 -25.63083 -25.08072 -23.90280 -22.26889 -21.92243 -21.76772 -21.16864 -19.58152 -19.31376 -18.72126 -18.30130 -18.21881 -17.41791 -16.86068 -16.43027 -16.41369 -16.34570 -15.74397 -15.68619 -15.44639 -15.29546 -14.98206 -14.71316 -14.36879 -14.34862 -14.05875 -13.64974 -13.48647 -13.29264 -13.05583 -12.77960 -12.67761 -12.52114 -12.05003 -11.95695 -11.88159 -11.59283 -11.26284 -11.20702 -10.94202 -10.90808 -10.76494 -10.53034 -10.07490 -9.35620 -9.09106 -8.30433 -5.26068 -0.24950 0.74876 0.80496 1.34612 1.55309 1.62063 1.70831 1.86371 1.87057 2.21090 2.29312 2.74732 3.17717 3.32863 3.45842 3.53631 3.57884 3.76184 3.81030 3.85989 3.93290 4.07422 4.20780 4.36774 4.42642 4.46239 4.49169 4.55902 4.64123 4.66589 4.74145 4.77312 4.80766 4.92662 5.16072 5.34784 5.41727 5.66181 5.92214 6.48344 6.52344 6.55221 6.98678 7.06055 7.12839 7.15300 8.02765 8.17107 9.20077 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014202 B = 0.003037 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.018999 B = 9217.210676 C =10583.097773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.360 5.360 3 C 0.125 3.875 4 C -0.224 4.224 5 C 0.143 3.857 6 O 0.109 5.891 7 N -0.379 5.379 8 C 0.037 3.963 9 C -0.270 4.270 10 C 0.594 3.406 11 O -0.561 6.561 12 N -0.705 5.705 13 C 0.133 3.867 14 C 0.166 3.834 15 H 0.078 0.922 16 C 0.065 3.935 17 O -0.584 6.584 18 N -0.733 5.733 19 C -0.324 4.324 20 H 0.072 0.928 21 C -0.101 4.101 22 N -0.975 5.975 23 Si 1.124 2.876 24 H -0.301 1.301 25 H -0.274 1.274 26 H -0.282 1.282 27 C 0.109 3.891 28 N -0.328 5.328 29 H 0.090 0.910 30 H 0.128 0.872 31 H 0.095 0.905 32 H 0.231 0.769 33 H 0.212 0.788 34 H 0.408 0.592 35 H 0.054 0.946 36 H 0.081 0.919 37 H 0.034 0.966 38 H 0.067 0.933 39 H 0.386 0.614 40 H 0.359 0.641 41 H 0.243 0.757 42 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.276 6.029 2.583 23.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.138 5.138 3 C -0.028 4.028 4 C -0.237 4.237 5 C 0.075 3.925 6 O 0.049 5.951 7 N -0.085 5.085 8 C -0.143 4.143 9 C -0.278 4.278 10 C 0.381 3.619 11 O -0.441 6.441 12 N -0.355 5.355 13 C 0.009 3.991 14 C 0.057 3.943 15 H 0.096 0.904 16 C -0.016 4.016 17 O -0.391 6.391 18 N -0.375 5.375 19 C -0.455 4.455 20 H 0.090 0.910 21 C -0.293 4.293 22 N -0.623 5.623 23 Si 0.950 3.050 24 H -0.228 1.228 25 H -0.200 1.200 26 H -0.209 1.209 27 C -0.078 4.078 28 N -0.149 5.149 29 H 0.109 0.891 30 H 0.146 0.854 31 H 0.114 0.886 32 H 0.247 0.753 33 H 0.229 0.771 34 H 0.244 0.756 35 H 0.072 0.928 36 H 0.099 0.901 37 H 0.053 0.947 38 H 0.085 0.915 39 H 0.234 0.766 40 H 0.191 0.809 41 H 0.053 0.947 42 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -22.276 6.300 0.964 23.170 hybrid contribution 0.199 -0.858 1.483 1.725 sum -22.077 5.442 2.447 22.869 Atomic orbital electron populations 1.22426 0.70543 1.06898 1.05286 1.48744 1.08666 1.02969 1.53430 1.23556 0.88529 0.95376 0.95319 1.17798 0.89341 0.91432 1.25176 1.22143 0.93914 0.87911 0.88498 1.84865 1.28003 1.34862 1.47361 1.73509 0.94768 1.21529 1.18674 1.25280 1.02170 0.92846 0.93962 1.21317 0.98041 1.03442 1.04961 1.16855 0.82201 0.82427 0.80444 1.90787 1.45244 1.42031 1.66069 1.45757 1.14392 1.36957 1.38435 1.21400 0.96172 0.91562 0.90008 1.20786 0.87536 0.96727 0.89218 0.90411 1.22855 0.99000 0.84237 0.95513 1.86506 1.91429 1.16247 1.44912 1.42484 1.15169 1.63881 1.15990 1.20329 0.94217 1.28411 1.02549 0.90967 1.26995 1.07063 1.02069 0.93167 1.70978 1.23471 1.38393 1.29495 0.82664 0.71778 0.75522 0.75053 1.22795 1.20003 1.20866 1.23781 0.95019 0.93522 0.95439 1.77196 1.01704 1.09332 1.26684 0.89104 0.85379 0.88623 0.75314 0.77120 0.75586 0.92757 0.90078 0.94729 0.91461 0.76578 0.80941 0.94671 0.81008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.59 11.44 127.77 1.46 2.05 16 2 N -0.36 -6.44 3.99 -367.60 -1.47 -7.90 16 3 C 0.12 2.10 11.51 84.25 0.97 3.07 16 4 C -0.22 -5.67 5.56 -20.16 -0.11 -5.79 16 5 C 0.14 3.93 7.39 25.08 0.19 4.12 16 6 O 0.11 2.90 11.17 69.82 0.78 3.68 16 7 N -0.38 -10.98 11.97 -56.83 -0.68 -11.66 16 8 C 0.04 1.05 11.68 86.04 1.01 2.06 16 9 C -0.27 -8.26 6.36 -19.54 -0.12 -8.38 16 10 C 0.59 20.41 7.80 86.51 0.67 21.08 16 11 O -0.56 -21.55 14.56 -4.25 -0.06 -21.61 16 12 N -0.70 -23.79 5.38 -466.85 -2.51 -26.30 16 13 C 0.13 4.55 5.12 86.38 0.44 4.99 16 14 C 0.17 6.06 2.84 45.00 0.13 6.18 16 15 H 0.08 2.67 8.08 -2.39 -0.02 2.65 16 16 C 0.06 2.11 6.86 71.99 0.49 2.60 16 17 O -0.58 -19.98 12.64 -148.98 -1.88 -21.87 16 18 N -0.73 -34.29 4.51 -322.92 -1.46 -35.74 16 19 C -0.32 -16.82 9.93 84.03 0.83 -15.98 16 20 H 0.07 3.59 7.83 -2.91 -0.02 3.56 16 21 C -0.10 -5.63 5.50 84.86 0.47 -5.16 16 22 N -0.98 -59.99 13.70 21.65 0.30 -59.70 16 23 Si 1.12 50.32 29.92 68.60 2.05 52.37 16 24 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 25 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 26 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 27 C 0.11 3.16 10.39 85.65 0.89 4.05 16 28 N -0.33 -8.82 12.50 -56.25 -0.70 -9.52 16 29 H 0.09 0.45 8.14 -2.38 -0.02 0.43 16 30 H 0.13 -0.07 8.14 -2.39 -0.02 -0.09 16 31 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.23 1.56 8.06 -2.91 -0.02 1.54 16 33 H 0.21 5.31 7.77 -2.91 -0.02 5.28 16 34 H 0.41 13.80 7.39 -92.72 -0.68 13.12 16 35 H 0.05 2.13 7.39 -2.39 -0.02 2.12 16 36 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 37 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.39 9.26 9.12 -74.05 -0.68 8.59 16 40 H 0.36 18.66 6.63 -92.71 -0.61 18.04 16 41 H 0.24 15.12 6.77 -92.71 -0.63 14.49 16 42 H 0.17 5.33 7.81 -2.92 -0.02 5.31 16 Total: -1.00 -78.44 369.74 0.96 -77.48 By element: Atomic # 1 Polarization: 46.61 SS G_CDS: -0.73 Total: 45.88 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: 7.32 Total: 14.88 kcal Atomic # 7 Polarization: -144.30 SS G_CDS: -6.52 Total: -150.82 kcal Atomic # 8 Polarization: -38.63 SS G_CDS: -1.16 Total: -39.80 kcal Atomic # 14 Polarization: 50.32 SS G_CDS: 2.05 Total: 52.37 kcal Total: -78.44 0.96 -77.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725538265.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.551 kcal (2) G-P(sol) polarization free energy of solvation -78.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds