Wall clock time and date at job start Tue Mar 31 2020 18:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34452 * 125.76790 * 2 1 4 4 C 1.38075 * 107.39047 * 180.14340 * 3 2 1 5 5 C 1.47350 * 126.41281 * 179.87186 * 4 3 2 6 6 O 1.34258 * 127.19927 * 312.12771 * 5 4 3 7 7 N 1.20734 * 111.95319 * 180.33107 * 6 5 4 8 8 C 1.29877 * 112.81248 * 359.71927 * 7 6 5 9 9 C 1.39935 * 127.19488 * 131.99772 * 5 4 3 10 10 C 1.46920 * 128.39538 * 359.96388 * 9 5 4 11 11 O 1.21672 * 119.99740 * 354.25222 * 10 9 5 12 12 N 1.34774 * 119.99559 * 174.24670 * 10 9 5 13 13 C 1.46502 * 119.99364 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.46943 * 180.02562 * 13 12 10 15 15 H 1.09002 * 109.46672 * 295.00041 * 14 13 12 16 16 C 1.52997 * 109.47247 * 174.99707 * 14 13 12 17 17 O 1.42899 * 109.47175 * 305.00215 * 16 14 13 18 18 N 1.46498 * 109.46944 * 54.99815 * 14 13 12 19 19 C 1.36945 * 119.99529 * 205.00209 * 18 14 13 20 20 H 1.08000 * 120.00039 * 359.97438 * 19 18 14 21 21 C 1.38814 * 119.99541 * 179.72750 * 19 18 14 22 22 N 1.31623 * 119.99439 * 180.27611 * 21 19 18 23 23 Si 1.86799 * 120.00108 * 0.27136 * 21 19 18 24 24 H 1.48503 * 109.47112 * 90.00576 * 23 21 19 25 25 H 1.48504 * 109.47008 * 210.00218 * 23 21 19 26 26 H 1.48492 * 109.47328 * 330.00191 * 23 21 19 27 27 C 1.41310 * 107.17331 * 359.61172 * 4 3 2 28 28 N 1.30471 * 108.05816 * 0.24056 * 27 4 3 29 29 H 1.09002 * 109.46889 * 270.32185 * 1 2 3 30 30 H 1.09005 * 109.46540 * 30.31400 * 1 2 3 31 31 H 1.08991 * 109.47635 * 150.31059 * 1 2 3 32 32 H 1.08007 * 126.31121 * 359.97438 * 3 2 1 33 33 H 1.08002 * 126.78821 * 179.97438 * 8 7 6 34 34 H 0.96997 * 120.00321 * 0.02562 * 12 10 9 35 35 H 1.08995 * 109.47507 * 60.00276 * 13 12 10 36 36 H 1.09004 * 109.47442 * 299.99774 * 13 12 10 37 37 H 1.09008 * 109.47006 * 64.99958 * 16 14 13 38 38 H 1.09003 * 109.47294 * 184.99567 * 16 14 13 39 39 H 0.96701 * 114.00102 * 180.02562 * 17 16 14 40 40 H 0.97000 * 120.00404 * 25.00087 * 18 14 13 41 41 H 0.97003 * 119.99393 * 179.97438 * 22 21 19 42 42 H 1.08006 * 125.96540 * 180.25973 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2509 1.0909 0.0000 4 6 3.5612 0.6556 -0.0033 5 6 4.7651 1.5052 -0.0072 6 8 5.0126 2.5588 -0.8017 7 7 6.0905 3.0526 -0.5738 8 6 6.7305 2.4466 0.3801 9 6 5.8886 1.3841 0.8183 10 6 6.1414 0.3965 1.8762 11 8 5.2701 -0.3909 2.1942 12 7 7.3386 0.3628 2.4944 13 6 7.5908 -0.6223 3.5490 14 6 9.0145 -0.4465 4.0811 15 1 9.7289 -0.6799 3.2916 16 6 9.2366 -1.3898 5.2651 17 8 8.2276 -1.1624 6.2511 18 7 9.2049 0.9388 4.5181 19 6 10.4620 1.4814 4.5456 20 1 11.3130 0.8879 4.2456 21 6 10.6417 2.7957 4.9543 22 7 11.8493 3.3189 4.9755 23 14 9.1699 3.8219 5.4738 24 1 8.9443 3.6607 6.9328 25 1 9.4306 5.2516 5.1683 26 1 7.9648 3.3693 4.7336 27 6 3.5316 -0.7572 0.0038 28 7 2.2829 -1.1355 0.0057 29 1 -0.3633 0.0058 1.0277 30 1 -0.3632 0.8872 -0.5187 31 1 -0.3634 -0.8926 -0.5089 32 1 1.9186 2.1186 -0.0004 33 1 7.7079 2.6982 0.7647 34 1 8.0331 0.9908 2.2411 35 1 7.4760 -1.6271 3.1426 36 1 6.8790 -0.4754 4.3613 37 1 9.1827 -2.4229 4.9216 38 1 10.2184 -1.2023 5.6998 39 1 8.3067 -1.7269 7.0322 40 1 8.4406 1.4717 4.7879 41 1 11.9749 4.2375 5.2607 42 1 4.3922 -1.4097 0.0075 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725538274.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:33 Heat of formation + Delta-G solvation = 79.937633 kcal Electronic energy + Delta-G solvation = -28618.444287 eV Core-core repulsion = 24411.916565 eV Total energy + Delta-G solvation = -4206.527722 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.91388 -41.34933 -39.32366 -37.25920 -35.05083 -34.11504 -33.95775 -33.39935 -32.37342 -31.51149 -29.75594 -28.93933 -27.14332 -25.94106 -24.08742 -23.31943 -22.88171 -21.29984 -20.98382 -20.29625 -19.93823 -18.42265 -17.87036 -17.64948 -17.16605 -16.89369 -16.10235 -15.75311 -15.75029 -15.09777 -14.91322 -14.54057 -14.42887 -14.15763 -13.66932 -13.46828 -13.39829 -13.23734 -13.11861 -13.04313 -12.83220 -12.68248 -12.40751 -11.74842 -11.61803 -11.07789 -11.02972 -10.88330 -10.72833 -10.50688 -10.14967 -9.95050 -9.86529 -9.68511 -9.67360 -9.48603 -9.02878 -8.75894 -8.42832 -7.38056 -5.85741 -3.22323 0.77313 1.61952 1.86814 2.09316 2.46280 2.93392 3.34179 3.39921 3.40580 3.43839 3.48965 4.13742 4.27636 4.44937 4.53087 4.60942 4.68749 4.76065 4.79401 4.94949 5.02071 5.13576 5.19300 5.26643 5.35012 5.43144 5.53144 5.56472 5.79728 5.82957 5.90010 5.91495 6.19799 6.28607 6.36237 6.55754 6.59036 6.74803 7.38610 7.77759 7.87883 8.09059 8.13056 8.33208 8.42728 9.11136 9.83706 10.03602 11.31854 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013451 B = 0.003272 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.200527 B = 8555.839558 C = 9733.539164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.366 5.366 3 C 0.099 3.901 4 C -0.189 4.189 5 C 0.123 3.877 6 O 0.103 5.897 7 N -0.366 5.366 8 C 0.032 3.968 9 C -0.246 4.246 10 C 0.591 3.409 11 O -0.537 6.537 12 N -0.708 5.708 13 C 0.118 3.882 14 C 0.171 3.829 15 H 0.075 0.925 16 C 0.059 3.941 17 O -0.565 6.565 18 N -0.739 5.739 19 C -0.251 4.251 20 H 0.091 0.909 21 C 0.011 3.989 22 N -0.930 5.930 23 Si 0.883 3.117 24 H -0.284 1.284 25 H -0.292 1.292 26 H -0.276 1.276 27 C 0.125 3.875 28 N -0.299 5.299 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.185 0.815 33 H 0.202 0.798 34 H 0.408 0.592 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.031 0.969 38 H 0.054 0.946 39 H 0.366 0.634 40 H 0.366 0.634 41 H 0.260 0.740 42 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.521 -7.329 -10.601 23.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.145 5.145 3 C -0.052 4.052 4 C -0.202 4.202 5 C 0.056 3.944 6 O 0.042 5.958 7 N -0.071 5.071 8 C -0.147 4.147 9 C -0.254 4.254 10 C 0.377 3.623 11 O -0.416 6.416 12 N -0.359 5.359 13 C -0.006 4.006 14 C 0.061 3.939 15 H 0.093 0.907 16 C -0.022 4.022 17 O -0.369 6.369 18 N -0.382 5.382 19 C -0.380 4.380 20 H 0.109 0.891 21 C -0.186 4.186 22 N -0.577 5.577 23 Si 0.713 3.287 24 H -0.210 1.210 25 H -0.218 1.218 26 H -0.203 1.203 27 C -0.062 4.062 28 N -0.119 5.119 29 H 0.097 0.903 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.202 0.798 33 H 0.219 0.781 34 H 0.244 0.756 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.049 0.951 38 H 0.073 0.927 39 H 0.212 0.788 40 H 0.199 0.801 41 H 0.070 0.930 42 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -20.764 -7.345 -11.617 24.901 hybrid contribution 0.448 1.001 1.537 1.888 sum -20.317 -6.344 -10.080 23.550 Atomic orbital electron populations 1.21957 0.73524 1.04829 1.03869 1.48284 1.07100 1.03793 1.55311 1.22939 0.89980 0.93787 0.98461 1.17645 0.88253 0.92014 1.22304 1.21994 0.94008 0.88503 0.89898 1.84876 1.28354 1.34829 1.47745 1.73539 0.94297 1.20606 1.18664 1.25162 1.02151 0.93199 0.94236 1.21461 0.96846 1.03006 1.04079 1.16685 0.82584 0.82535 0.80483 1.90808 1.44296 1.41120 1.65359 1.45823 1.14671 1.37289 1.38167 1.21624 0.98306 0.91166 0.89532 1.20579 0.93595 0.86297 0.93473 0.90703 1.22993 0.91432 0.96871 0.90900 1.86518 1.53136 1.65335 1.31888 1.42742 1.06641 1.08654 1.80181 1.19042 0.84676 0.95784 1.38545 0.89122 1.24641 0.95933 0.96960 1.01033 1.69702 1.19807 1.14882 1.53298 0.86589 0.83025 0.80034 0.79055 1.21035 1.21821 1.20255 1.23878 0.94940 0.92768 0.94661 1.77255 1.01573 1.07382 1.25696 0.90304 0.89148 0.88862 0.79829 0.78108 0.75554 0.91417 0.90477 0.95061 0.92748 0.78849 0.80055 0.92954 0.79354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.47 11.44 59.85 0.68 1.15 16 2 N -0.37 -3.52 3.99 -67.54 -0.27 -3.79 16 3 C 0.10 0.94 11.51 -16.46 -0.19 0.75 16 4 C -0.19 -2.32 5.56 -105.08 -0.58 -2.91 16 5 C 0.12 1.64 7.40 -35.24 -0.26 1.38 16 6 O 0.10 1.36 11.17 16.65 0.19 1.54 16 7 N -0.37 -5.23 11.97 30.85 0.37 -4.86 16 8 C 0.03 0.44 11.68 -16.75 -0.20 0.25 16 9 C -0.25 -3.58 6.36 -104.12 -0.66 -4.24 16 10 C 0.59 9.54 7.80 -12.75 -0.10 9.44 16 11 O -0.54 -9.68 14.56 5.21 0.08 -9.61 16 12 N -0.71 -11.22 5.38 -61.54 -0.33 -11.55 16 13 C 0.12 1.91 5.12 -4.04 -0.02 1.89 16 14 C 0.17 3.00 2.84 -67.93 -0.19 2.80 16 15 H 0.08 1.27 8.08 -51.93 -0.42 0.85 16 16 C 0.06 0.95 6.86 37.16 0.25 1.20 16 17 O -0.57 -9.20 12.64 -35.23 -0.45 -9.65 16 18 N -0.74 -16.15 4.31 -53.42 -0.23 -16.38 16 19 C -0.25 -6.54 10.41 -15.06 -0.16 -6.70 16 20 H 0.09 2.52 8.06 -52.49 -0.42 2.09 16 21 C 0.01 0.30 5.50 -17.43 -0.10 0.21 16 22 N -0.93 -28.06 13.97 55.49 0.78 -27.29 16 23 Si 0.88 21.76 27.74 -169.99 -4.72 17.04 16 24 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 26 H -0.28 -6.46 6.51 56.52 0.37 -6.09 16 27 C 0.12 1.61 10.39 -16.96 -0.18 1.43 16 28 N -0.30 -3.79 12.50 30.87 0.39 -3.40 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.18 1.07 8.06 -52.48 -0.42 0.64 16 33 H 0.20 2.46 7.77 -52.49 -0.41 2.05 16 34 H 0.41 6.39 7.39 -40.82 -0.30 6.08 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.08 1.40 7.39 -51.93 -0.38 1.02 16 37 H 0.03 0.41 8.14 -51.92 -0.42 -0.01 16 38 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.37 4.22 9.12 45.56 0.42 4.64 16 40 H 0.37 8.36 5.66 -40.82 -0.23 8.13 16 41 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 42 H 0.19 2.31 7.82 -52.48 -0.41 1.90 16 LS Contribution 368.32 15.07 5.55 5.55 Total: -1.00 -35.53 368.32 -4.63 -40.16 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: -4.29 Total: 15.58 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: -1.69 Total: 6.65 kcal Atomic # 7 Polarization: -67.98 SS G_CDS: 0.70 Total: -67.28 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -0.18 Total: -17.71 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.72 Total: 17.04 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.53 -4.63 -40.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725538274.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.099 kcal (2) G-P(sol) polarization free energy of solvation -35.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds