Wall clock time and date at job start Tue Mar 31 2020 18:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34452 * 125.76790 * 2 1 4 4 C 1.38075 * 107.39047 * 180.14340 * 3 2 1 5 5 C 1.47350 * 126.41281 * 179.87186 * 4 3 2 6 6 O 1.34258 * 127.19927 * 312.12771 * 5 4 3 7 7 N 1.20734 * 111.95319 * 180.33107 * 6 5 4 8 8 C 1.29877 * 112.81248 * 359.71927 * 7 6 5 9 9 C 1.39935 * 127.19488 * 131.99772 * 5 4 3 10 10 C 1.46920 * 128.39538 * 359.96388 * 9 5 4 11 11 O 1.21672 * 119.99740 * 354.25222 * 10 9 5 12 12 N 1.34774 * 119.99559 * 174.24670 * 10 9 5 13 13 C 1.46502 * 119.99364 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.46943 * 180.02562 * 13 12 10 15 15 H 1.09002 * 109.46672 * 295.00041 * 14 13 12 16 16 C 1.52997 * 109.47247 * 174.99707 * 14 13 12 17 17 O 1.42899 * 109.47175 * 305.00215 * 16 14 13 18 18 N 1.46498 * 109.46944 * 54.99815 * 14 13 12 19 19 C 1.36945 * 119.99529 * 205.00209 * 18 14 13 20 20 H 1.08000 * 120.00039 * 359.97438 * 19 18 14 21 21 C 1.38814 * 119.99541 * 179.72750 * 19 18 14 22 22 N 1.31623 * 119.99439 * 180.27611 * 21 19 18 23 23 Si 1.86799 * 120.00108 * 0.27136 * 21 19 18 24 24 H 1.48503 * 109.47112 * 90.00576 * 23 21 19 25 25 H 1.48504 * 109.47008 * 210.00218 * 23 21 19 26 26 H 1.48492 * 109.47328 * 330.00191 * 23 21 19 27 27 C 1.41310 * 107.17331 * 359.61172 * 4 3 2 28 28 N 1.30471 * 108.05816 * 0.24056 * 27 4 3 29 29 H 1.09002 * 109.46889 * 270.32185 * 1 2 3 30 30 H 1.09005 * 109.46540 * 30.31400 * 1 2 3 31 31 H 1.08991 * 109.47635 * 150.31059 * 1 2 3 32 32 H 1.08007 * 126.31121 * 359.97438 * 3 2 1 33 33 H 1.08002 * 126.78821 * 179.97438 * 8 7 6 34 34 H 0.96997 * 120.00321 * 0.02562 * 12 10 9 35 35 H 1.08995 * 109.47507 * 60.00276 * 13 12 10 36 36 H 1.09004 * 109.47442 * 299.99774 * 13 12 10 37 37 H 1.09008 * 109.47006 * 64.99958 * 16 14 13 38 38 H 1.09003 * 109.47294 * 184.99567 * 16 14 13 39 39 H 0.96701 * 114.00102 * 180.02562 * 17 16 14 40 40 H 0.97000 * 120.00404 * 25.00087 * 18 14 13 41 41 H 0.97003 * 119.99393 * 179.97438 * 22 21 19 42 42 H 1.08006 * 125.96540 * 180.25973 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2509 1.0909 0.0000 4 6 3.5612 0.6556 -0.0033 5 6 4.7651 1.5052 -0.0072 6 8 5.0126 2.5588 -0.8017 7 7 6.0905 3.0526 -0.5738 8 6 6.7305 2.4466 0.3801 9 6 5.8886 1.3841 0.8183 10 6 6.1414 0.3965 1.8762 11 8 5.2701 -0.3909 2.1942 12 7 7.3386 0.3628 2.4944 13 6 7.5908 -0.6223 3.5490 14 6 9.0145 -0.4465 4.0811 15 1 9.7289 -0.6799 3.2916 16 6 9.2366 -1.3898 5.2651 17 8 8.2276 -1.1624 6.2511 18 7 9.2049 0.9388 4.5181 19 6 10.4620 1.4814 4.5456 20 1 11.3130 0.8879 4.2456 21 6 10.6417 2.7957 4.9543 22 7 11.8493 3.3189 4.9755 23 14 9.1699 3.8219 5.4738 24 1 8.9443 3.6607 6.9328 25 1 9.4306 5.2516 5.1683 26 1 7.9648 3.3693 4.7336 27 6 3.5316 -0.7572 0.0038 28 7 2.2829 -1.1355 0.0057 29 1 -0.3633 0.0058 1.0277 30 1 -0.3632 0.8872 -0.5187 31 1 -0.3634 -0.8926 -0.5089 32 1 1.9186 2.1186 -0.0004 33 1 7.7079 2.6982 0.7647 34 1 8.0331 0.9908 2.2411 35 1 7.4760 -1.6271 3.1426 36 1 6.8790 -0.4754 4.3613 37 1 9.1827 -2.4229 4.9216 38 1 10.2184 -1.2023 5.6998 39 1 8.3067 -1.7269 7.0322 40 1 8.4406 1.4717 4.7879 41 1 11.9749 4.2375 5.2607 42 1 4.3922 -1.4097 0.0075 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725538274.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:32 Heat of formation + Delta-G solvation = 50.720647 kcal Electronic energy + Delta-G solvation = -28619.711230 eV Core-core repulsion = 24411.916565 eV Total energy + Delta-G solvation = -4207.794665 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.97060 -42.15335 -40.60467 -38.65948 -36.43488 -35.32991 -35.04694 -34.60466 -33.35809 -33.24813 -30.83254 -30.36767 -27.85218 -27.11220 -25.47227 -24.97905 -23.87462 -22.22724 -21.87447 -21.68394 -21.16861 -19.89665 -19.22538 -18.70791 -18.26276 -18.22053 -17.29284 -16.85678 -16.58467 -16.40966 -16.08722 -16.07132 -15.49746 -15.37210 -15.02175 -14.83439 -14.59842 -14.33590 -14.31169 -14.15643 -14.03795 -13.64180 -13.28402 -13.19903 -12.84510 -12.75990 -12.60269 -12.31892 -11.93968 -11.86457 -11.77295 -11.57907 -11.20178 -10.99276 -10.89263 -10.72452 -10.51223 -10.03568 -9.33562 -9.31407 -7.99782 -5.31778 -0.22973 0.76660 0.82346 1.37005 1.38230 1.42334 1.47079 1.57726 1.91652 2.20218 2.33112 2.49321 3.20067 3.32735 3.35756 3.48945 3.60027 3.72448 3.83132 3.87262 3.95589 4.10056 4.22597 4.41895 4.44667 4.46304 4.55975 4.64376 4.66739 4.68011 4.74474 4.79972 4.85727 5.00137 5.20479 5.39056 5.46020 5.80544 5.92246 6.23941 6.52153 6.55028 7.04517 7.08490 7.10806 7.18497 7.85319 8.04053 9.21208 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013451 B = 0.003272 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.200527 B = 8555.839558 C = 9733.539164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.361 5.361 3 C 0.119 3.881 4 C -0.224 4.224 5 C 0.143 3.857 6 O 0.108 5.892 7 N -0.380 5.380 8 C 0.034 3.966 9 C -0.269 4.269 10 C 0.594 3.406 11 O -0.559 6.559 12 N -0.708 5.708 13 C 0.130 3.870 14 C 0.165 3.835 15 H 0.083 0.917 16 C 0.065 3.935 17 O -0.584 6.584 18 N -0.740 5.740 19 C -0.218 4.218 20 H 0.069 0.931 21 C -0.053 4.053 22 N -0.980 5.980 23 Si 0.942 3.058 24 H -0.291 1.291 25 H -0.299 1.299 26 H -0.256 1.256 27 C 0.113 3.887 28 N -0.328 5.328 29 H 0.088 0.912 30 H 0.126 0.874 31 H 0.097 0.903 32 H 0.225 0.775 33 H 0.213 0.787 34 H 0.409 0.591 35 H 0.086 0.914 36 H 0.060 0.940 37 H 0.070 0.930 38 H 0.035 0.965 39 H 0.388 0.612 40 H 0.363 0.637 41 H 0.256 0.744 42 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.285 -7.612 -11.114 26.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.139 5.139 3 C -0.033 4.033 4 C -0.237 4.237 5 C 0.075 3.925 6 O 0.048 5.952 7 N -0.086 5.086 8 C -0.145 4.145 9 C -0.277 4.277 10 C 0.382 3.618 11 O -0.439 6.439 12 N -0.359 5.359 13 C 0.006 3.994 14 C 0.057 3.943 15 H 0.100 0.900 16 C -0.016 4.016 17 O -0.390 6.390 18 N -0.383 5.383 19 C -0.349 4.349 20 H 0.087 0.913 21 C -0.245 4.245 22 N -0.630 5.630 23 Si 0.772 3.228 24 H -0.218 1.218 25 H -0.226 1.226 26 H -0.181 1.181 27 C -0.074 4.074 28 N -0.149 5.149 29 H 0.107 0.893 30 H 0.144 0.856 31 H 0.116 0.884 32 H 0.242 0.758 33 H 0.229 0.771 34 H 0.246 0.754 35 H 0.105 0.895 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.053 0.947 39 H 0.236 0.764 40 H 0.196 0.804 41 H 0.065 0.935 42 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -23.585 -7.704 -12.139 27.622 hybrid contribution 1.179 0.933 1.653 2.235 sum -22.405 -6.771 -10.486 25.648 Atomic orbital electron populations 1.22403 0.70712 1.06865 1.05159 1.48716 1.08614 1.03023 1.53577 1.23537 0.88871 0.95312 0.95586 1.17807 0.89117 0.91717 1.25059 1.22152 0.93845 0.87813 0.88655 1.84870 1.28009 1.34828 1.47461 1.73524 0.94758 1.21223 1.19082 1.25327 1.02463 0.92799 0.93937 1.21335 0.98043 1.03533 1.04776 1.16812 0.82171 0.82410 0.80451 1.90795 1.44876 1.42082 1.66135 1.45806 1.14757 1.37302 1.38060 1.21465 0.96547 0.92207 0.89162 1.20840 0.94776 0.84303 0.94415 0.89960 1.22804 0.90363 0.98313 0.90080 1.86462 1.53018 1.66532 1.33036 1.42720 1.04807 1.10502 1.80318 1.19016 0.85638 0.95048 1.35209 0.91330 1.25258 0.98001 0.98482 1.02774 1.69848 1.21991 1.15064 1.56142 0.85611 0.80935 0.78115 0.78185 1.21834 1.22605 1.18113 1.23863 0.95109 0.93253 0.95146 1.77184 1.01820 1.09221 1.26680 0.89333 0.85601 0.88445 0.75844 0.77070 0.75441 0.89545 0.92134 0.91233 0.94705 0.76400 0.80395 0.93525 0.80063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.55 11.44 127.77 1.46 2.01 16 2 N -0.36 -6.06 3.99 -367.59 -1.47 -7.53 16 3 C 0.12 1.93 11.51 84.25 0.97 2.90 16 4 C -0.22 -5.20 5.56 -20.16 -0.11 -5.31 16 5 C 0.14 3.63 7.40 25.08 0.19 3.82 16 6 O 0.11 2.70 11.17 69.79 0.78 3.48 16 7 N -0.38 -10.41 11.97 -56.83 -0.68 -11.10 16 8 C 0.03 0.91 11.68 86.04 1.01 1.92 16 9 C -0.27 -7.59 6.36 -19.54 -0.12 -7.71 16 10 C 0.59 18.68 7.80 86.52 0.67 19.35 16 11 O -0.56 -19.77 14.56 -4.26 -0.06 -19.84 16 12 N -0.71 -21.60 5.38 -466.83 -2.51 -24.11 16 13 C 0.13 3.99 5.12 86.38 0.44 4.44 16 14 C 0.17 5.53 2.84 44.99 0.13 5.65 16 15 H 0.08 2.66 8.08 -2.39 -0.02 2.64 16 16 C 0.07 1.95 6.86 71.98 0.49 2.44 16 17 O -0.58 -17.77 12.64 -148.98 -1.88 -19.65 16 18 N -0.74 -31.56 4.31 -322.93 -1.39 -32.96 16 19 C -0.22 -11.37 10.41 84.03 0.87 -10.50 16 20 H 0.07 3.86 8.06 -2.91 -0.02 3.83 16 21 C -0.05 -2.99 5.50 84.86 0.47 -2.52 16 22 N -0.98 -60.41 13.97 21.65 0.30 -60.11 16 23 Si 0.94 45.14 27.74 68.60 1.90 47.04 16 24 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 25 H -0.30 -14.58 7.11 99.48 0.71 -13.88 16 26 H -0.26 -11.24 6.51 99.48 0.65 -10.59 16 27 C 0.11 2.87 10.39 85.65 0.89 3.76 16 28 N -0.33 -8.01 12.50 -56.24 -0.70 -8.71 16 29 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.13 -0.08 8.14 -2.38 -0.02 -0.10 16 31 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.23 1.59 8.06 -2.91 -0.02 1.57 16 33 H 0.21 4.98 7.77 -2.91 -0.02 4.95 16 34 H 0.41 12.35 7.39 -92.71 -0.68 11.67 16 35 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.06 2.10 7.39 -2.38 -0.02 2.08 16 37 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 38 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.39 8.04 9.12 -74.06 -0.68 7.36 16 40 H 0.36 16.01 5.66 -92.71 -0.52 15.49 16 41 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 42 H 0.18 4.59 7.82 -2.91 -0.02 4.57 16 Total: -1.00 -77.46 368.32 0.80 -76.66 By element: Atomic # 1 Polarization: 37.43 SS G_CDS: -0.84 Total: 36.59 kcal Atomic # 6 Polarization: 12.88 SS G_CDS: 7.36 Total: 20.24 kcal Atomic # 7 Polarization: -138.06 SS G_CDS: -6.45 Total: -144.51 kcal Atomic # 8 Polarization: -34.85 SS G_CDS: -1.16 Total: -36.01 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.90 Total: 47.04 kcal Total: -77.46 0.80 -76.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725538274.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.379 kcal (2) G-P(sol) polarization free energy of solvation -77.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds