Wall clock time and date at job start Tue Mar 31 2020 18:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47458 * 2 1 4 4 C 1.52998 * 109.47606 * 239.99531 * 2 1 3 5 5 N 1.46504 * 109.47106 * 65.00087 * 4 2 1 6 6 C 1.36934 * 119.99834 * 180.02562 * 5 4 2 7 7 H 1.07997 * 120.00341 * 359.97438 * 6 5 4 8 8 C 1.38812 * 119.99517 * 180.02562 * 6 5 4 9 9 N 1.31621 * 120.00080 * 180.02562 * 8 6 5 10 10 Si 1.86806 * 120.00389 * 359.97438 * 8 6 5 11 11 H 1.48496 * 109.46985 * 89.99772 * 10 8 6 12 12 H 1.48491 * 109.47155 * 210.00123 * 10 8 6 13 13 H 1.48501 * 109.46668 * 330.00518 * 10 8 6 14 14 C 1.53007 * 109.47083 * 119.99617 * 2 1 3 15 15 N 1.46505 * 109.46950 * 295.00281 * 14 2 1 16 16 C 1.34779 * 119.99897 * 179.97438 * 15 14 2 17 17 O 1.21598 * 119.99746 * 0.02562 * 16 15 14 18 18 C 1.47514 * 119.99898 * 179.97438 * 16 15 14 19 19 N 1.34404 * 125.77215 * 0.02562 * 18 16 15 20 20 N 1.28767 * 109.52070 * 179.74708 * 19 18 16 21 21 N 1.40203 * 108.36773 * 0.38615 * 20 19 18 22 22 C 1.46506 * 126.59395 * 179.88089 * 21 20 19 23 23 C 1.34808 * 106.81255 * 359.61287 * 21 20 19 24 24 C 1.50707 * 126.58255 * 180.18768 * 23 21 20 25 25 F 1.39900 * 109.46575 * 30.03000 * 24 23 21 26 26 F 1.39901 * 109.47274 * 150.02599 * 24 23 21 27 27 F 1.39895 * 109.47046 * 270.03078 * 24 23 21 28 28 H 1.09001 * 109.46530 * 60.00153 * 1 2 3 29 29 H 1.09005 * 109.47048 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47118 * 300.00499 * 1 2 3 31 31 H 1.08998 * 109.47518 * 185.00158 * 4 2 1 32 32 H 1.09000 * 109.47101 * 305.00081 * 4 2 1 33 33 H 0.96995 * 119.99665 * 0.02562 * 5 4 2 34 34 H 0.97003 * 120.00323 * 179.97438 * 9 8 6 35 35 H 1.08995 * 109.47477 * 175.00003 * 14 2 1 36 36 H 1.09007 * 109.46701 * 54.99930 * 14 2 1 37 37 H 0.96996 * 120.00112 * 0.02562 * 15 14 2 38 38 H 1.08999 * 109.46892 * 269.68778 * 22 21 20 39 39 H 1.09000 * 109.46803 * 29.67951 * 22 21 20 40 40 H 1.09000 * 109.47214 * 149.68744 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 1.6526 0.0352 -2.4424 6 6 2.0013 -0.4211 -3.6855 7 1 2.5624 -1.3383 -3.7863 8 6 1.6346 0.2961 -4.8160 9 7 1.9693 -0.1426 -6.0109 10 14 0.6648 1.8831 -4.6417 11 1 1.6044 3.0270 -4.5247 12 1 -0.1969 2.0704 -5.8364 13 1 -0.1840 1.8133 -3.4251 14 6 2.0400 -0.7212 1.2493 15 7 1.6523 0.0355 2.4424 16 6 1.9954 -0.4134 3.6661 17 8 2.6271 -1.4462 3.7797 18 6 1.6056 0.3488 4.8674 19 7 0.9106 1.4992 4.8767 20 7 0.7404 1.8892 6.0920 21 7 1.3572 0.9622 6.9440 22 6 1.4079 1.0196 8.4071 23 6 1.8896 0.0048 6.1584 24 6 2.6528 -1.2114 6.6165 25 9 2.1924 -1.6028 7.8783 26 9 2.4584 -2.2547 5.7050 27 9 4.0158 -0.9056 6.6917 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 3.1264 -0.7995 -1.2054 32 1 1.6055 -1.7199 -1.2950 33 1 1.1490 0.8592 -2.3518 34 1 1.7127 0.3583 -6.8010 35 1 3.1263 -0.7995 1.2058 36 1 1.6053 -1.7198 1.2953 37 1 1.1481 0.8591 2.3518 38 1 2.2990 1.5646 8.7186 39 1 0.5205 1.5300 8.7815 40 1 1.4419 0.0072 8.8095 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732364679.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:08 Heat of formation + Delta-G solvation = -65.526446 kcal Electronic energy + Delta-G solvation = -29031.622006 eV Core-core repulsion = 24276.929749 eV Total energy + Delta-G solvation = -4754.692258 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.131 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -50.75753 -48.37240 -48.05255 -43.04712 -39.72013 -37.01994 -35.58637 -34.53618 -32.68274 -32.33994 -30.55962 -28.89714 -27.16629 -26.59595 -25.66529 -23.90389 -22.57321 -21.94815 -20.93047 -20.23909 -19.16168 -19.13788 -18.81589 -18.15637 -17.39027 -17.05310 -16.45285 -15.97771 -15.63492 -15.24617 -14.97253 -14.85629 -14.60835 -14.50751 -14.40929 -14.24500 -14.16531 -13.96355 -13.95723 -13.68735 -13.43658 -13.17113 -12.62539 -12.49342 -12.44677 -12.20986 -12.07219 -11.43173 -11.26018 -11.03812 -10.75253 -10.64521 -10.61015 -10.30718 -10.14228 -10.08075 -9.56692 -9.19052 -8.88550 -7.21704 -5.75102 -3.10703 -0.01496 0.95087 1.03092 1.85778 2.73348 2.81217 2.85759 3.26375 3.38006 3.40667 3.46353 3.59561 3.68706 3.81781 4.22155 4.25741 4.55921 4.60324 4.62241 4.84346 4.96452 5.09709 5.25625 5.29560 5.55451 5.67520 5.75209 5.84837 5.87596 6.09134 6.22669 6.30969 6.48695 6.66889 6.76206 6.99439 7.29615 7.86958 8.01324 8.43807 9.22820 9.94970 10.14629 11.43316 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.025460 B = 0.002292 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.482784 B =12211.581707 C =12990.225834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.116 4.116 3 H 0.078 0.922 4 C 0.165 3.835 5 N -0.754 5.754 6 C -0.243 4.243 7 H 0.091 0.909 8 C 0.003 3.997 9 N -0.934 5.934 10 Si 0.885 3.115 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.277 1.277 14 C 0.127 3.873 15 N -0.702 5.702 16 C 0.589 3.411 17 O -0.515 6.515 18 C -0.027 4.027 19 N -0.199 5.199 20 N -0.024 5.024 21 N -0.325 5.325 22 C 0.064 3.936 23 C 0.003 3.997 24 C 0.547 3.453 25 F -0.174 7.174 26 F -0.121 7.121 27 F -0.159 7.159 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.046 0.954 31 H 0.031 0.969 32 H 0.031 0.969 33 H 0.361 0.639 34 H 0.259 0.741 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.409 0.591 38 H 0.101 0.899 39 H 0.114 0.886 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.596 1.607 35.298 35.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.135 4.135 3 H 0.096 0.904 4 C 0.038 3.962 5 N -0.400 5.400 6 C -0.373 4.373 7 H 0.108 0.892 8 C -0.193 4.193 9 N -0.582 5.582 10 Si 0.715 3.285 11 H -0.211 1.211 12 H -0.218 1.218 13 H -0.203 1.203 14 C 0.003 3.997 15 N -0.353 5.353 16 C 0.370 3.630 17 O -0.389 6.389 18 C -0.169 4.169 19 N -0.070 5.070 20 N -0.004 5.004 21 N -0.111 5.111 22 C -0.076 4.076 23 C -0.136 4.136 24 C 0.490 3.510 25 F -0.156 7.156 26 F -0.102 7.102 27 F -0.140 7.140 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.194 0.806 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.245 0.755 38 H 0.119 0.881 39 H 0.132 0.868 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.822 1.993 35.143 35.247 hybrid contribution -0.368 0.720 0.324 0.871 sum -2.190 2.713 35.467 35.638 Atomic orbital electron populations 1.21836 0.94654 1.02332 1.01454 1.21624 0.96780 1.00696 0.94389 0.90378 1.20548 0.97241 0.94229 0.84223 1.42685 1.67705 1.27302 1.02341 1.19061 1.29342 1.07137 0.81745 0.89159 1.24680 1.00813 0.98660 0.95110 1.69703 1.51382 1.40240 0.96924 0.86545 0.80251 0.84833 0.76855 1.21100 1.21764 1.20315 1.21533 1.00719 0.95341 0.82063 1.45828 1.56391 1.27963 1.05111 1.16673 0.80376 0.84121 0.81786 1.90946 1.39602 1.22705 1.85672 1.21502 1.05684 0.96387 0.93288 1.74782 1.10754 1.08430 1.13044 1.82130 1.15120 1.10151 0.93038 1.50339 1.35514 1.15439 1.09805 1.22743 1.06569 1.06964 0.71286 1.21648 1.04190 0.94927 0.92867 1.16894 0.77184 0.81814 0.75152 1.93154 1.88678 1.91773 1.41976 1.93481 1.94543 1.57421 1.64738 1.93293 1.31770 1.93015 1.95925 0.91694 0.92317 0.93488 0.95143 0.95075 0.80600 0.93074 0.90511 0.90516 0.75519 0.88050 0.86759 0.86976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 8.94 37.16 0.33 -1.66 16 2 C -0.12 -1.64 2.46 -90.62 -0.22 -1.86 16 3 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 4 C 0.17 3.08 5.65 -4.04 -0.02 3.05 16 5 N -0.75 -17.65 5.13 -59.91 -0.31 -17.96 16 6 C -0.24 -6.89 10.47 -15.06 -0.16 -7.04 16 7 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 8 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 9 N -0.93 -29.51 13.97 55.49 0.78 -28.73 16 10 Si 0.88 22.07 27.74 -169.99 -4.71 17.36 16 11 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 13 H -0.28 -6.42 6.52 56.52 0.37 -6.06 16 14 C 0.13 1.59 5.06 -4.04 -0.02 1.57 16 15 N -0.70 -8.16 5.28 -61.35 -0.32 -8.48 16 16 C 0.59 7.43 7.76 -12.48 -0.10 7.33 16 17 O -0.51 -7.60 13.05 5.28 0.07 -7.53 16 18 C -0.03 -0.30 6.96 -83.55 -0.58 -0.88 16 19 N -0.20 -2.20 12.04 32.84 0.40 -1.81 16 20 N -0.02 -0.24 13.78 60.35 0.83 0.59 16 21 N -0.32 -2.43 4.03 -63.58 -0.26 -2.68 16 22 C 0.06 0.16 11.24 59.85 0.67 0.83 16 23 C 0.00 0.03 6.46 -81.87 -0.53 -0.50 16 24 C 0.55 4.94 3.24 36.01 0.12 5.06 16 25 F -0.17 -1.17 14.67 2.25 0.03 -1.14 16 26 F -0.12 -1.41 13.42 2.25 0.03 -1.38 16 27 F -0.16 -1.50 17.30 2.25 0.04 -1.46 16 28 H 0.06 1.02 7.18 -51.93 -0.37 0.65 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.05 0.53 7.18 -51.93 -0.37 0.16 16 31 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.36 8.19 4.71 -40.82 -0.19 8.00 16 34 H 0.26 7.78 8.31 -40.82 -0.34 7.45 16 35 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.08 0.98 8.14 -51.92 -0.42 0.56 16 37 H 0.41 4.25 7.34 -40.82 -0.30 3.95 16 38 H 0.10 0.09 8.14 -51.93 -0.42 -0.34 16 39 H 0.11 0.08 8.14 -51.93 -0.42 -0.34 16 40 H 0.11 0.18 5.69 -51.93 -0.30 -0.12 16 LS Contribution 348.51 15.07 5.25 5.25 Total: -1.00 -34.23 348.51 -3.29 -37.52 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -4.51 Total: 4.55 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: -0.61 Total: 5.90 kcal Atomic # 7 Polarization: -60.19 SS G_CDS: 1.11 Total: -59.07 kcal Atomic # 8 Polarization: -7.60 SS G_CDS: 0.07 Total: -7.53 kcal Atomic # 9 Polarization: -4.08 SS G_CDS: 0.10 Total: -3.97 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.71 Total: 17.36 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.23 -3.29 -37.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732364679.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.005 kcal (2) G-P(sol) polarization free energy of solvation -34.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds