Wall clock time and date at job start Tue Mar 31 2020 18:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47458 * 2 1 4 4 C 1.52998 * 109.47606 * 239.99531 * 2 1 3 5 5 N 1.46504 * 109.47106 * 65.00087 * 4 2 1 6 6 C 1.36934 * 119.99834 * 180.02562 * 5 4 2 7 7 H 1.07997 * 120.00341 * 359.97438 * 6 5 4 8 8 C 1.38812 * 119.99517 * 180.02562 * 6 5 4 9 9 N 1.31621 * 120.00080 * 180.02562 * 8 6 5 10 10 Si 1.86806 * 120.00389 * 359.97438 * 8 6 5 11 11 H 1.48496 * 109.46985 * 89.99772 * 10 8 6 12 12 H 1.48491 * 109.47155 * 210.00123 * 10 8 6 13 13 H 1.48501 * 109.46668 * 330.00518 * 10 8 6 14 14 C 1.53007 * 109.47083 * 119.99617 * 2 1 3 15 15 N 1.46505 * 109.46950 * 295.00281 * 14 2 1 16 16 C 1.34779 * 119.99897 * 179.97438 * 15 14 2 17 17 O 1.21598 * 119.99746 * 0.02562 * 16 15 14 18 18 C 1.47514 * 119.99898 * 179.97438 * 16 15 14 19 19 N 1.34404 * 125.77215 * 0.02562 * 18 16 15 20 20 N 1.28767 * 109.52070 * 179.74708 * 19 18 16 21 21 N 1.40203 * 108.36773 * 0.38615 * 20 19 18 22 22 C 1.46506 * 126.59395 * 179.88089 * 21 20 19 23 23 C 1.34808 * 106.81255 * 359.61287 * 21 20 19 24 24 C 1.50707 * 126.58255 * 180.18768 * 23 21 20 25 25 F 1.39900 * 109.46575 * 30.03000 * 24 23 21 26 26 F 1.39901 * 109.47274 * 150.02599 * 24 23 21 27 27 F 1.39895 * 109.47046 * 270.03078 * 24 23 21 28 28 H 1.09001 * 109.46530 * 60.00153 * 1 2 3 29 29 H 1.09005 * 109.47048 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47118 * 300.00499 * 1 2 3 31 31 H 1.08998 * 109.47518 * 185.00158 * 4 2 1 32 32 H 1.09000 * 109.47101 * 305.00081 * 4 2 1 33 33 H 0.96995 * 119.99665 * 0.02562 * 5 4 2 34 34 H 0.97003 * 120.00323 * 179.97438 * 9 8 6 35 35 H 1.08995 * 109.47477 * 175.00003 * 14 2 1 36 36 H 1.09007 * 109.46701 * 54.99930 * 14 2 1 37 37 H 0.96996 * 120.00112 * 0.02562 * 15 14 2 38 38 H 1.08999 * 109.46892 * 269.68778 * 22 21 20 39 39 H 1.09000 * 109.46803 * 29.67951 * 22 21 20 40 40 H 1.09000 * 109.47214 * 149.68744 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 1.6526 0.0352 -2.4424 6 6 2.0013 -0.4211 -3.6855 7 1 2.5624 -1.3383 -3.7863 8 6 1.6346 0.2961 -4.8160 9 7 1.9693 -0.1426 -6.0109 10 14 0.6648 1.8831 -4.6417 11 1 1.6044 3.0270 -4.5247 12 1 -0.1969 2.0704 -5.8364 13 1 -0.1840 1.8133 -3.4251 14 6 2.0400 -0.7212 1.2493 15 7 1.6523 0.0355 2.4424 16 6 1.9954 -0.4134 3.6661 17 8 2.6271 -1.4462 3.7797 18 6 1.6056 0.3488 4.8674 19 7 0.9106 1.4992 4.8767 20 7 0.7404 1.8892 6.0920 21 7 1.3572 0.9622 6.9440 22 6 1.4079 1.0196 8.4071 23 6 1.8896 0.0048 6.1584 24 6 2.6528 -1.2114 6.6165 25 9 2.1924 -1.6028 7.8783 26 9 2.4584 -2.2547 5.7050 27 9 4.0158 -0.9056 6.6917 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 3.1264 -0.7995 -1.2054 32 1 1.6055 -1.7199 -1.2950 33 1 1.1490 0.8592 -2.3518 34 1 1.7127 0.3583 -6.8010 35 1 3.1263 -0.7995 1.2058 36 1 1.6053 -1.7198 1.2953 37 1 1.1481 0.8591 2.3518 38 1 2.2990 1.5646 8.7186 39 1 0.5205 1.5300 8.7815 40 1 1.4419 0.0072 8.8095 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732364679.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:08 Heat of formation + Delta-G solvation = -91.549982 kcal Electronic energy + Delta-G solvation = -29032.750472 eV Core-core repulsion = 24276.929749 eV Total energy + Delta-G solvation = -4755.820723 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.131 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -51.45457 -49.02973 -48.82624 -43.75586 -40.70293 -38.34200 -36.27425 -35.97231 -34.18221 -33.23592 -32.35206 -29.48376 -27.92940 -27.70937 -27.07451 -24.91937 -23.81032 -23.09210 -21.85226 -21.50498 -20.03069 -19.85519 -19.58885 -19.45398 -18.75431 -17.71028 -17.38209 -16.80912 -16.60845 -16.49762 -15.90405 -15.85814 -15.69497 -15.48054 -15.37504 -15.20542 -15.03133 -14.95576 -14.83977 -14.66206 -14.44217 -14.13914 -13.96826 -13.79301 -13.60484 -13.18998 -13.13560 -12.86427 -12.73043 -12.17649 -12.10558 -11.99607 -11.83663 -11.73822 -11.68661 -11.32916 -10.96266 -10.87963 -10.16866 -9.27502 -8.00869 -5.34463 -0.71378 0.22648 0.34536 1.22419 1.39310 1.43560 1.50764 1.83722 1.90512 2.17417 2.50426 2.56374 2.90125 2.98208 3.10816 3.30501 3.51725 3.56043 3.95847 3.96263 4.06408 4.14508 4.15582 4.37316 4.50891 4.54347 4.71904 4.76963 4.79105 4.94905 5.03949 5.12820 5.22650 5.34222 5.46448 5.77871 6.18373 6.22956 6.45406 6.94425 7.10021 7.85686 8.05580 9.20716 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.025460 B = 0.002292 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.482784 B =12211.581707 C =12990.225834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.100 4.100 3 H 0.087 0.913 4 C 0.160 3.840 5 N -0.755 5.755 6 C -0.234 4.234 7 H 0.055 0.945 8 C -0.067 4.067 9 N -0.985 5.985 10 Si 0.957 3.043 11 H -0.278 1.278 12 H -0.297 1.297 13 H -0.247 1.247 14 C 0.136 3.864 15 N -0.695 5.695 16 C 0.589 3.411 17 O -0.541 6.541 18 C -0.044 4.044 19 N -0.212 5.212 20 N -0.033 5.033 21 N -0.306 5.306 22 C 0.049 3.951 23 C 0.004 3.996 24 C 0.552 3.448 25 F -0.158 7.158 26 F -0.138 7.138 27 F -0.161 7.161 28 H 0.047 0.953 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.028 0.972 32 H 0.028 0.972 33 H 0.368 0.632 34 H 0.258 0.742 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.416 0.584 38 H 0.124 0.876 39 H 0.136 0.864 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.662 3.236 38.452 38.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.119 4.119 3 H 0.105 0.895 4 C 0.033 3.967 5 N -0.401 5.401 6 C -0.365 4.365 7 H 0.073 0.927 8 C -0.259 4.259 9 N -0.636 5.636 10 Si 0.783 3.217 11 H -0.204 1.204 12 H -0.224 1.224 13 H -0.171 1.171 14 C 0.013 3.987 15 N -0.346 5.346 16 C 0.372 3.628 17 O -0.417 6.417 18 C -0.187 4.187 19 N -0.082 5.082 20 N -0.014 5.014 21 N -0.092 5.092 22 C -0.088 4.088 23 C -0.137 4.137 24 C 0.495 3.505 25 F -0.140 7.140 26 F -0.119 7.119 27 F -0.142 7.142 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.201 0.799 34 H 0.066 0.934 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.254 0.746 38 H 0.142 0.858 39 H 0.155 0.845 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.906 3.643 38.382 38.664 hybrid contribution 0.030 0.121 -0.502 0.518 sum -2.876 3.764 37.880 38.175 Atomic orbital electron populations 1.21815 0.93860 1.02458 1.01900 1.21415 0.97255 1.00563 0.92692 0.89517 1.20706 0.97168 0.94215 0.84587 1.42656 1.67642 1.27870 1.01966 1.19041 1.27842 1.05685 0.83963 0.92674 1.25558 1.02753 1.02933 0.94612 1.69896 1.53528 1.42264 0.97926 0.85385 0.78862 0.79749 0.77658 1.20397 1.22397 1.17111 1.21311 1.00449 0.95169 0.81811 1.45689 1.56267 1.28040 1.04586 1.16837 0.79846 0.83851 0.82281 1.90934 1.40803 1.23859 1.86111 1.21308 1.07077 0.96920 0.93346 1.74751 1.11170 1.08476 1.13837 1.82061 1.15600 1.10716 0.93012 1.50685 1.33460 1.13921 1.11179 1.23284 1.08789 1.08423 0.68351 1.21628 1.04103 0.95264 0.92722 1.16782 0.77044 0.81293 0.75399 1.93186 1.88445 1.91619 1.40712 1.93445 1.94635 1.58201 1.65610 1.93288 1.32019 1.92988 1.95955 0.93417 0.92440 0.90775 0.95415 0.95400 0.79854 0.93365 0.90841 0.90612 0.74622 0.85796 0.84539 0.85860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.58 8.94 71.98 0.64 -2.94 16 2 C -0.10 -2.66 2.46 -10.79 -0.03 -2.69 16 3 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 4 C 0.16 5.85 5.65 86.38 0.49 6.34 16 5 N -0.76 -34.76 5.13 -343.45 -1.76 -36.53 16 6 C -0.23 -13.47 10.47 84.03 0.88 -12.59 16 7 H 0.06 3.49 8.06 -2.91 -0.02 3.46 16 8 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 9 N -0.99 -63.84 13.97 21.65 0.30 -63.54 16 10 Si 0.96 45.30 27.74 68.60 1.90 47.20 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 12 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 13 H -0.25 -10.34 6.52 99.48 0.65 -9.69 16 14 C 0.14 3.25 5.06 86.38 0.44 3.69 16 15 N -0.69 -15.05 5.28 -466.26 -2.46 -17.51 16 16 C 0.59 14.27 7.76 86.69 0.67 14.95 16 17 O -0.54 -15.69 13.05 -4.02 -0.05 -15.75 16 18 C -0.04 -0.93 6.96 40.81 0.28 -0.65 16 19 N -0.21 -4.35 12.04 -50.00 -0.60 -4.95 16 20 N -0.03 -0.59 13.78 37.02 0.51 -0.08 16 21 N -0.31 -3.84 4.03 -355.08 -1.43 -5.27 16 22 C 0.05 0.08 11.24 127.77 1.44 1.52 16 23 C 0.00 0.07 6.46 41.72 0.27 0.34 16 24 C 0.55 9.18 3.24 71.24 0.23 9.41 16 25 F -0.16 -1.78 14.67 44.97 0.66 -1.12 16 26 F -0.14 -3.12 13.42 44.97 0.60 -2.52 16 27 F -0.16 -2.83 17.30 44.97 0.78 -2.05 16 28 H 0.05 1.37 7.18 -2.39 -0.02 1.36 16 29 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 30 H 0.07 1.46 7.18 -2.39 -0.02 1.44 16 31 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.37 15.92 4.71 -92.71 -0.44 15.48 16 34 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 35 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 37 H 0.42 7.77 7.34 -92.71 -0.68 7.09 16 38 H 0.12 -0.24 8.14 -2.39 -0.02 -0.26 16 39 H 0.14 -0.31 8.14 -2.39 -0.02 -0.33 16 40 H 0.12 -0.01 5.69 -2.39 -0.01 -0.03 16 Total: -1.00 -75.21 348.51 4.18 -71.04 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -0.05 Total: 17.23 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: 5.78 Total: 13.84 kcal Atomic # 7 Polarization: -122.43 SS G_CDS: -5.45 Total: -127.88 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: -0.05 Total: -15.75 kcal Atomic # 9 Polarization: -7.73 SS G_CDS: 2.04 Total: -5.69 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 1.90 Total: 47.20 kcal Total: -75.21 4.18 -71.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732364679.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.513 kcal (2) G-P(sol) polarization free energy of solvation -75.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds