Wall clock time and date at job start Tue Mar 31 2020 18:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46998 * 2 1 4 4 C 1.52996 * 109.46909 * 120.00202 * 2 1 3 5 5 N 1.46498 * 109.47059 * 294.99709 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31624 * 119.99698 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00072 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47159 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.47290 * 120.00044 * 10 8 6 13 13 H 1.48503 * 109.47163 * 240.00049 * 10 8 6 14 14 C 1.53004 * 109.46816 * 240.00146 * 2 1 3 15 15 N 1.46500 * 109.47129 * 65.00299 * 14 2 1 16 16 C 1.34771 * 120.00026 * 179.97438 * 15 14 2 17 17 O 1.21600 * 120.00148 * 359.97438 * 16 15 14 18 18 C 1.47523 * 120.00470 * 179.97438 * 16 15 14 19 19 N 1.34405 * 125.76622 * 359.69262 * 18 16 15 20 20 N 1.28765 * 109.52320 * 179.84814 * 19 18 16 21 21 N 1.40209 * 108.36367 * 0.41177 * 20 19 18 22 22 C 1.46500 * 126.59394 * 179.74410 * 21 20 19 23 23 C 1.34812 * 106.81402 * 359.74186 * 21 20 19 24 24 C 1.50702 * 126.58484 * 179.97438 * 23 21 20 25 25 F 1.39904 * 109.46777 * 30.00065 * 24 23 21 26 26 F 1.39893 * 109.47293 * 149.99897 * 24 23 21 27 27 F 1.39898 * 109.47309 * 270.00482 * 24 23 21 28 28 H 1.09001 * 109.46930 * 59.99747 * 1 2 3 29 29 H 1.09000 * 109.46973 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47053 * 300.00107 * 1 2 3 31 31 H 1.09004 * 109.47066 * 174.99977 * 4 2 1 32 32 H 1.08994 * 109.46974 * 55.00124 * 4 2 1 33 33 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 34 34 H 0.96999 * 119.99739 * 180.02562 * 9 8 6 35 35 H 1.09005 * 109.46502 * 184.99774 * 14 2 1 36 36 H 1.08996 * 109.47343 * 304.99842 * 14 2 1 37 37 H 0.97004 * 120.00029 * 359.97438 * 15 14 2 38 38 H 1.09003 * 109.47452 * 270.00199 * 22 21 20 39 39 H 1.08997 * 109.46797 * 29.99946 * 22 21 20 40 40 H 1.09002 * 109.47188 * 149.99668 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 0.0353 2.4423 6 6 1.9967 -0.4236 3.6858 7 1 2.5577 -1.3410 3.7866 8 6 1.6245 0.2903 4.8166 9 7 0.9404 1.4080 4.6937 10 14 2.0946 -0.3353 6.5128 11 1 2.8565 -1.6029 6.3792 12 1 2.9366 0.6778 7.1983 13 1 0.8649 -0.5779 7.3093 14 6 2.0400 -0.7213 -1.2493 15 7 1.6525 0.0354 -2.4424 16 6 1.9964 -0.4129 -3.6659 17 8 2.6288 -1.4453 -3.7796 18 6 1.6057 0.3486 -4.8675 19 7 0.9045 1.4953 -4.8772 20 7 0.7428 1.8904 -6.0920 21 7 1.3564 0.9614 -6.9441 22 6 1.4075 1.0190 -8.4071 23 6 1.8903 0.0048 -6.1584 24 6 2.6541 -1.2110 -6.6164 25 9 3.3199 -0.9203 -7.8120 26 9 3.5874 -1.5711 -5.6385 27 9 1.7639 -2.2700 -6.8240 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 3.1264 -0.7995 1.2056 32 1 1.6054 -1.7198 1.2950 33 1 1.1483 0.8591 2.3518 34 1 0.6807 1.9070 5.4838 35 1 3.1264 -0.7994 -1.2056 36 1 1.6054 -1.7198 -1.2953 37 1 1.1483 0.8592 -2.3518 38 1 0.5426 0.5011 -8.8217 39 1 1.3969 2.0599 -8.7302 40 1 2.3211 0.5389 -8.7579 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732364682.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:12 Heat of formation + Delta-G solvation = -69.911988 kcal Electronic energy + Delta-G solvation = -28947.656413 eV Core-core repulsion = 24192.773984 eV Total energy + Delta-G solvation = -4754.882429 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.131 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -50.72232 -48.33741 -48.01655 -42.99445 -39.64718 -36.85936 -35.53520 -34.39313 -32.63877 -32.29757 -30.09315 -28.81498 -27.10663 -26.44084 -25.41386 -23.88502 -22.64266 -22.18528 -20.86829 -20.06654 -19.12507 -19.05411 -18.76656 -18.03024 -17.01663 -16.98282 -16.37468 -15.92154 -15.52627 -15.25908 -14.92804 -14.72233 -14.62749 -14.48825 -14.32258 -14.21901 -14.10309 -13.93276 -13.81985 -13.59318 -13.40689 -13.00977 -12.63211 -12.44417 -12.30039 -12.06026 -11.98295 -11.21100 -11.04139 -10.90753 -10.70715 -10.56047 -10.44784 -10.24824 -10.09047 -9.95961 -9.66473 -9.11204 -8.85911 -6.89733 -5.74816 -3.03125 0.03382 0.99807 1.08870 1.89971 2.79899 2.86826 2.90501 3.30703 3.45365 3.51201 3.53356 3.64489 3.72600 3.87362 4.27329 4.29506 4.60195 4.61349 4.66376 4.97447 5.07868 5.23111 5.34338 5.41578 5.59994 5.82531 5.96713 5.98316 6.11712 6.25264 6.38277 6.44379 6.68744 6.80104 6.89004 7.05599 7.37152 7.73238 7.93865 8.44372 9.55662 10.13239 10.47852 11.48262 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.027844 B = 0.002130 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.343439 B =13142.173611 C =13827.546480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.111 4.111 3 H 0.078 0.922 4 C 0.161 3.839 5 N -0.731 5.731 6 C -0.237 4.237 7 H 0.071 0.929 8 C -0.016 4.016 9 N -0.934 5.934 10 Si 0.907 3.093 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.292 1.292 14 C 0.126 3.874 15 N -0.700 5.700 16 C 0.588 3.412 17 O -0.517 6.517 18 C -0.026 4.026 19 N -0.198 5.198 20 N -0.024 5.024 21 N -0.325 5.325 22 C 0.065 3.935 23 C 0.002 3.998 24 C 0.547 3.453 25 F -0.175 7.175 26 F -0.121 7.121 27 F -0.159 7.159 28 H 0.044 0.956 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.022 0.978 32 H 0.023 0.977 33 H 0.384 0.616 34 H 0.254 0.746 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.410 0.590 38 H 0.101 0.899 39 H 0.114 0.886 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.884 -1.615 -32.084 32.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.131 4.131 3 H 0.097 0.903 4 C 0.033 3.967 5 N -0.376 5.376 6 C -0.368 4.368 7 H 0.089 0.911 8 C -0.211 4.211 9 N -0.583 5.583 10 Si 0.738 3.262 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.219 1.219 14 C 0.003 3.997 15 N -0.351 5.351 16 C 0.370 3.630 17 O -0.392 6.392 18 C -0.168 4.168 19 N -0.069 5.069 20 N -0.004 5.004 21 N -0.112 5.112 22 C -0.075 4.075 23 C -0.137 4.137 24 C 0.490 3.510 25 F -0.156 7.156 26 F -0.102 7.102 27 F -0.140 7.140 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.040 0.960 32 H 0.041 0.959 33 H 0.218 0.782 34 H 0.064 0.936 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.246 0.754 38 H 0.119 0.881 39 H 0.132 0.868 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 0.631 -1.189 -31.981 32.009 hybrid contribution 0.339 -0.475 0.577 0.821 sum 0.970 -1.664 -31.404 31.463 Atomic orbital electron populations 1.21809 0.94557 1.01987 1.01695 1.21572 0.96857 1.00649 0.93986 0.90317 1.20569 0.96643 0.94191 0.85310 1.42352 1.67040 1.27604 1.00566 1.19283 1.28502 1.05429 0.83610 0.91087 1.24742 1.01073 0.97457 0.97860 1.69670 1.43572 1.16713 1.28337 0.86109 0.77558 0.77833 0.84662 1.20545 1.21912 1.21906 1.21555 1.00558 0.95299 0.82276 1.45841 1.56193 1.27990 1.05091 1.16681 0.80197 0.84327 0.81807 1.90938 1.39450 1.23020 1.85747 1.21517 1.05378 0.96588 0.93297 1.74791 1.10633 1.08473 1.13009 1.82134 1.15203 1.10023 0.93059 1.50338 1.35671 1.15385 1.09766 1.22734 1.06197 1.07309 0.71304 1.21636 1.04292 0.94928 0.92857 1.16893 0.77972 0.80822 0.75343 1.93154 1.81705 1.93169 1.47582 1.93479 1.64832 1.91700 1.60170 1.93290 1.68086 1.58006 1.94665 0.93741 0.92774 0.91065 0.96048 0.95931 0.78170 0.93592 0.90709 0.90739 0.75436 0.88090 0.86771 0.87006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 8.94 37.16 0.33 -1.81 16 2 C -0.11 -1.71 2.46 -90.62 -0.22 -1.94 16 3 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 4 C 0.16 3.17 5.65 -4.04 -0.02 3.14 16 5 N -0.73 -18.30 5.33 -59.91 -0.32 -18.62 16 6 C -0.24 -6.64 9.99 -15.06 -0.15 -6.79 16 7 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 8 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 9 N -0.93 -28.26 13.06 55.49 0.72 -27.53 16 10 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 12 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 13 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 14 C 0.13 1.70 5.06 -4.04 -0.02 1.68 16 15 N -0.70 -8.68 5.28 -61.35 -0.32 -9.00 16 16 C 0.59 7.77 7.76 -12.48 -0.10 7.67 16 17 O -0.52 -7.89 13.05 5.28 0.07 -7.82 16 18 C -0.03 -0.30 6.96 -83.55 -0.58 -0.89 16 19 N -0.20 -2.30 12.04 32.85 0.40 -1.90 16 20 N -0.02 -0.25 13.78 60.35 0.83 0.59 16 21 N -0.33 -2.56 4.03 -63.59 -0.26 -2.82 16 22 C 0.06 0.18 11.24 59.85 0.67 0.85 16 23 C 0.00 0.02 6.46 -81.88 -0.53 -0.50 16 24 C 0.55 5.13 3.24 36.01 0.12 5.25 16 25 F -0.17 -1.23 14.67 2.25 0.03 -1.19 16 26 F -0.12 -1.45 13.42 2.25 0.03 -1.42 16 27 F -0.16 -1.54 17.30 2.25 0.04 -1.50 16 28 H 0.04 0.56 7.18 -51.93 -0.37 0.19 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 1.25 7.18 -51.93 -0.37 0.87 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.38 10.03 6.85 -40.82 -0.28 9.75 16 34 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.41 4.62 7.34 -40.82 -0.30 4.32 16 38 H 0.10 0.11 8.14 -51.93 -0.42 -0.31 16 39 H 0.11 0.12 8.14 -51.93 -0.42 -0.31 16 40 H 0.11 0.21 5.69 -51.93 -0.30 -0.08 16 LS Contribution 351.63 15.07 5.30 5.30 Total: -1.00 -33.29 351.63 -3.65 -36.94 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -4.55 Total: 5.36 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: -0.60 Total: 6.12 kcal Atomic # 7 Polarization: -60.34 SS G_CDS: 1.05 Total: -59.29 kcal Atomic # 8 Polarization: -7.89 SS G_CDS: 0.07 Total: -7.82 kcal Atomic # 9 Polarization: -4.22 SS G_CDS: 0.10 Total: -4.12 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.29 -3.65 -36.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732364682.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.973 kcal (2) G-P(sol) polarization free energy of solvation -33.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds