Wall clock time and date at job start Tue Mar 31 2020 18:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46998 * 2 1 4 4 C 1.52996 * 109.46909 * 120.00202 * 2 1 3 5 5 N 1.46498 * 109.47059 * 294.99709 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31624 * 119.99698 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00072 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47159 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.47290 * 120.00044 * 10 8 6 13 13 H 1.48503 * 109.47163 * 240.00049 * 10 8 6 14 14 C 1.53004 * 109.46816 * 240.00146 * 2 1 3 15 15 N 1.46500 * 109.47129 * 65.00299 * 14 2 1 16 16 C 1.34771 * 120.00026 * 179.97438 * 15 14 2 17 17 O 1.21600 * 120.00148 * 359.97438 * 16 15 14 18 18 C 1.47523 * 120.00470 * 179.97438 * 16 15 14 19 19 N 1.34405 * 125.76622 * 359.69262 * 18 16 15 20 20 N 1.28765 * 109.52320 * 179.84814 * 19 18 16 21 21 N 1.40209 * 108.36367 * 0.41177 * 20 19 18 22 22 C 1.46500 * 126.59394 * 179.74410 * 21 20 19 23 23 C 1.34812 * 106.81402 * 359.74186 * 21 20 19 24 24 C 1.50702 * 126.58484 * 179.97438 * 23 21 20 25 25 F 1.39904 * 109.46777 * 30.00065 * 24 23 21 26 26 F 1.39893 * 109.47293 * 149.99897 * 24 23 21 27 27 F 1.39898 * 109.47309 * 270.00482 * 24 23 21 28 28 H 1.09001 * 109.46930 * 59.99747 * 1 2 3 29 29 H 1.09000 * 109.46973 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47053 * 300.00107 * 1 2 3 31 31 H 1.09004 * 109.47066 * 174.99977 * 4 2 1 32 32 H 1.08994 * 109.46974 * 55.00124 * 4 2 1 33 33 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 34 34 H 0.96999 * 119.99739 * 180.02562 * 9 8 6 35 35 H 1.09005 * 109.46502 * 184.99774 * 14 2 1 36 36 H 1.08996 * 109.47343 * 304.99842 * 14 2 1 37 37 H 0.97004 * 120.00029 * 359.97438 * 15 14 2 38 38 H 1.09003 * 109.47452 * 270.00199 * 22 21 20 39 39 H 1.08997 * 109.46797 * 29.99946 * 22 21 20 40 40 H 1.09002 * 109.47188 * 149.99668 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 0.0353 2.4423 6 6 1.9967 -0.4236 3.6858 7 1 2.5577 -1.3410 3.7866 8 6 1.6245 0.2903 4.8166 9 7 0.9404 1.4080 4.6937 10 14 2.0946 -0.3353 6.5128 11 1 2.8565 -1.6029 6.3792 12 1 2.9366 0.6778 7.1983 13 1 0.8649 -0.5779 7.3093 14 6 2.0400 -0.7213 -1.2493 15 7 1.6525 0.0354 -2.4424 16 6 1.9964 -0.4129 -3.6659 17 8 2.6288 -1.4453 -3.7796 18 6 1.6057 0.3486 -4.8675 19 7 0.9045 1.4953 -4.8772 20 7 0.7428 1.8904 -6.0920 21 7 1.3564 0.9614 -6.9441 22 6 1.4075 1.0190 -8.4071 23 6 1.8903 0.0048 -6.1584 24 6 2.6541 -1.2110 -6.6164 25 9 3.3199 -0.9203 -7.8120 26 9 3.5874 -1.5711 -5.6385 27 9 1.7639 -2.2700 -6.8240 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 3.1264 -0.7995 1.2056 32 1 1.6054 -1.7198 1.2950 33 1 1.1483 0.8591 2.3518 34 1 0.6807 1.9070 5.4838 35 1 3.1264 -0.7994 -1.2056 36 1 1.6054 -1.7198 -1.2953 37 1 1.1483 0.8592 -2.3518 38 1 0.5426 0.5011 -8.8217 39 1 1.3969 2.0599 -8.7302 40 1 2.3211 0.5389 -8.7579 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732364682.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:11 Heat of formation + Delta-G solvation = -94.484416 kcal Electronic energy + Delta-G solvation = -28948.721954 eV Core-core repulsion = 24192.773984 eV Total energy + Delta-G solvation = -4755.947970 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.131 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -51.44997 -49.02352 -48.82152 -43.74970 -40.69100 -38.23928 -36.24316 -35.91191 -34.13090 -33.20479 -31.88678 -29.45993 -27.89187 -27.59517 -26.99868 -25.04827 -24.03118 -23.09949 -21.83943 -21.35312 -19.89491 -19.84860 -19.54034 -19.20429 -18.67822 -17.69247 -17.39217 -16.81181 -16.56685 -16.50247 -15.94407 -15.74714 -15.53969 -15.47056 -15.39832 -15.26451 -15.06878 -14.96606 -14.68534 -14.65687 -14.43900 -14.10994 -13.92621 -13.59513 -13.54602 -13.12629 -12.93999 -12.81685 -12.71721 -12.17162 -12.11135 -11.97821 -11.83081 -11.71600 -11.63663 -11.31111 -10.92994 -10.87331 -10.16096 -8.96631 -7.93414 -5.21429 -0.70768 0.23227 0.35299 1.23035 1.49200 1.49594 1.59889 1.84935 1.90995 2.17783 2.56901 2.58079 2.90959 2.98913 3.11872 3.40595 3.52330 3.72723 3.98792 4.00313 4.10798 4.15801 4.35998 4.38802 4.51435 4.57095 4.73842 4.77572 4.79884 4.96485 5.06730 5.15942 5.25218 5.40132 5.49015 5.52929 6.19046 6.29688 6.46041 6.94322 7.36165 8.12200 8.35598 9.30419 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.027844 B = 0.002130 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.343439 B =13142.173611 C =13827.546480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.096 4.096 3 H 0.077 0.923 4 C 0.158 3.842 5 N -0.743 5.743 6 C -0.242 4.242 7 H 0.075 0.925 8 C -0.077 4.077 9 N -0.969 5.969 10 Si 0.973 3.027 11 H -0.267 1.267 12 H -0.294 1.294 13 H -0.293 1.293 14 C 0.138 3.862 15 N -0.695 5.695 16 C 0.589 3.411 17 O -0.540 6.540 18 C -0.044 4.044 19 N -0.213 5.213 20 N -0.034 5.034 21 N -0.306 5.306 22 C 0.049 3.951 23 C 0.004 3.996 24 C 0.553 3.447 25 F -0.158 7.158 26 F -0.138 7.138 27 F -0.161 7.161 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.042 0.958 31 H 0.024 0.976 32 H 0.025 0.975 33 H 0.376 0.624 34 H 0.251 0.749 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.416 0.584 38 H 0.124 0.876 39 H 0.136 0.864 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.087 -2.000 -34.033 34.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.115 4.115 3 H 0.096 0.904 4 C 0.031 3.969 5 N -0.386 5.386 6 C -0.374 4.374 7 H 0.093 0.907 8 C -0.269 4.269 9 N -0.620 5.620 10 Si 0.802 3.198 11 H -0.191 1.191 12 H -0.221 1.221 13 H -0.221 1.221 14 C 0.015 3.985 15 N -0.346 5.346 16 C 0.372 3.628 17 O -0.417 6.417 18 C -0.187 4.187 19 N -0.084 5.084 20 N -0.014 5.014 21 N -0.092 5.092 22 C -0.089 4.089 23 C -0.137 4.137 24 C 0.496 3.504 25 F -0.139 7.139 26 F -0.119 7.119 27 F -0.142 7.142 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.041 0.959 32 H 0.043 0.957 33 H 0.208 0.792 34 H 0.060 0.940 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.253 0.747 38 H 0.143 0.857 39 H 0.154 0.846 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.836 -1.577 -33.985 34.032 hybrid contribution 0.291 -0.370 0.987 1.094 sum 1.127 -1.947 -32.998 33.074 Atomic orbital electron populations 1.21736 0.94083 1.02056 1.01554 1.21353 0.97058 1.00171 0.92952 0.90448 1.20724 0.96738 0.94141 0.85334 1.42543 1.66898 1.27746 1.01401 1.19676 1.27520 1.05251 0.84966 0.90669 1.25555 1.01829 0.97992 1.01548 1.69819 1.45183 1.18052 1.28970 0.85078 0.77046 0.77623 0.80052 1.19101 1.22091 1.22061 1.21311 1.00361 0.95100 0.81774 1.45720 1.56153 1.28059 1.04679 1.16839 0.79640 0.84085 0.82235 1.90925 1.40533 1.24088 1.86162 1.21313 1.06816 0.97154 0.93387 1.74763 1.11125 1.08604 1.13867 1.82064 1.15741 1.10592 0.93011 1.50693 1.33565 1.13811 1.11170 1.23287 1.07843 1.09412 0.68311 1.21629 1.04155 0.95274 0.92645 1.16763 0.77658 0.80543 0.75485 1.93186 1.81354 1.93015 1.46390 1.93443 1.65452 1.91859 1.61142 1.93287 1.68130 1.58109 1.94658 0.91130 0.92593 0.93871 0.95851 0.95724 0.79153 0.94033 0.90844 0.90559 0.74719 0.85741 0.84573 0.85826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.02 8.94 71.98 0.64 -3.38 16 2 C -0.10 -2.90 2.46 -10.79 -0.03 -2.93 16 3 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 4 C 0.16 6.15 5.65 86.38 0.49 6.64 16 5 N -0.74 -37.50 5.33 -343.46 -1.83 -39.33 16 6 C -0.24 -13.60 9.99 84.03 0.84 -12.76 16 7 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 8 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 9 N -0.97 -59.50 13.06 21.65 0.28 -59.22 16 10 Si 0.97 46.51 29.55 68.60 2.03 48.54 16 11 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 12 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 13 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 14 C 0.14 3.59 5.06 86.38 0.44 4.03 16 15 N -0.70 -16.61 5.28 -466.27 -2.46 -19.07 16 16 C 0.59 15.18 7.76 86.69 0.67 15.85 16 17 O -0.54 -16.26 13.05 -4.03 -0.05 -16.31 16 18 C -0.04 -1.00 6.96 40.82 0.28 -0.71 16 19 N -0.21 -4.74 12.04 -49.99 -0.60 -5.34 16 20 N -0.03 -0.64 13.78 37.02 0.51 -0.13 16 21 N -0.31 -4.15 4.03 -355.10 -1.43 -5.59 16 22 C 0.05 0.12 11.24 127.77 1.44 1.56 16 23 C 0.00 0.08 6.46 41.72 0.27 0.35 16 24 C 0.55 9.58 3.24 71.24 0.23 9.81 16 25 F -0.16 -1.88 14.67 44.97 0.66 -1.22 16 26 F -0.14 -3.23 13.42 44.97 0.60 -2.63 16 27 F -0.16 -2.88 17.30 44.97 0.78 -2.11 16 28 H 0.07 1.69 7.18 -2.39 -0.02 1.67 16 29 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.04 1.52 7.18 -2.39 -0.02 1.50 16 31 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 32 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.38 20.02 6.85 -92.71 -0.63 19.39 16 34 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 35 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 36 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.42 8.95 7.34 -92.71 -0.68 8.27 16 38 H 0.12 -0.17 8.14 -2.39 -0.02 -0.19 16 39 H 0.14 -0.19 8.14 -2.39 -0.02 -0.21 16 40 H 0.12 0.07 5.69 -2.39 -0.01 0.06 16 Total: -1.00 -71.48 351.63 4.03 -67.44 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: -0.19 Total: 20.48 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: 5.74 Total: 14.47 kcal Atomic # 7 Polarization: -123.14 SS G_CDS: -5.53 Total: -128.68 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: -0.05 Total: -16.31 kcal Atomic # 9 Polarization: -7.99 SS G_CDS: 2.04 Total: -5.95 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -71.48 4.03 -67.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732364682.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.043 kcal (2) G-P(sol) polarization free energy of solvation -71.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds