Wall clock time and date at job start Tue Mar 31 2020 18:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47557 * 2 1 4 4 C 1.53004 * 109.47135 * 120.00237 * 2 1 3 5 5 N 1.46496 * 109.47130 * 174.99723 * 4 2 1 6 6 C 1.36941 * 120.00060 * 179.97438 * 5 4 2 7 7 H 1.08001 * 119.99792 * 0.02562 * 6 5 4 8 8 C 1.38811 * 119.99933 * 180.02562 * 6 5 4 9 9 N 1.31625 * 119.99696 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 120.00365 * 0.02562 * 8 6 5 11 11 H 1.48496 * 109.47209 * 89.99742 * 10 8 6 12 12 H 1.48496 * 109.47258 * 210.00302 * 10 8 6 13 13 H 1.48501 * 109.47008 * 330.00117 * 10 8 6 14 14 N 1.46504 * 109.47094 * 239.99909 * 2 1 3 15 15 C 1.46500 * 119.99671 * 300.00221 * 14 2 1 16 16 C 1.34777 * 119.99893 * 119.99979 * 14 2 1 17 17 O 1.21590 * 120.00004 * 2.01984 * 16 14 2 18 18 C 1.47525 * 119.99819 * 182.01367 * 16 14 2 19 19 N 1.34404 * 125.76900 * 354.50296 * 18 16 14 20 20 N 1.28764 * 109.52145 * 179.97438 * 19 18 16 21 21 N 1.40213 * 108.36495 * 359.97438 * 20 19 18 22 22 C 1.46505 * 126.59368 * 179.97438 * 21 20 19 23 23 C 1.34814 * 106.81216 * 0.22461 * 21 20 19 24 24 C 1.50697 * 126.57737 * 179.77346 * 23 21 20 25 25 F 1.39895 * 109.47212 * 30.03257 * 24 23 21 26 26 F 1.39909 * 109.46810 * 150.02782 * 24 23 21 27 27 F 1.39902 * 109.47367 * 270.02605 * 24 23 21 28 28 H 1.09000 * 109.47048 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46771 * 300.00350 * 1 2 3 30 30 H 1.08995 * 109.46824 * 59.99543 * 1 2 3 31 31 H 1.08998 * 109.47086 * 294.99703 * 4 2 1 32 32 H 1.09000 * 109.47492 * 54.99624 * 4 2 1 33 33 H 0.97002 * 120.00052 * 359.97438 * 5 4 2 34 34 H 0.97004 * 119.99516 * 180.02562 * 9 8 6 35 35 H 1.09001 * 109.47035 * 263.95105 * 15 14 2 36 36 H 1.08991 * 109.47653 * 23.95466 * 15 14 2 37 37 H 1.09005 * 109.47026 * 143.95278 * 15 14 2 38 38 H 1.08998 * 109.47026 * 90.02213 * 22 21 20 39 39 H 1.08990 * 109.46764 * 210.02239 * 22 21 20 40 40 H 1.09001 * 109.46780 * 330.02148 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8265 1.1905 6 6 4.1839 -1.4381 2.2072 7 1 3.6468 -1.8433 3.0520 8 6 5.5673 -1.5373 2.1518 9 7 6.2246 -2.1256 3.1287 10 14 6.4964 -0.8359 0.6909 11 1 6.8571 0.5781 0.9661 12 1 7.7324 -1.6270 0.4641 13 1 5.6380 -0.9011 -0.5192 14 7 2.0184 -0.6906 -1.1962 15 6 1.6643 -2.0932 -1.4280 16 6 2.7932 -0.0356 -2.0834 17 8 3.1173 1.1172 -1.8728 18 6 3.2482 -0.7175 -3.3099 19 7 3.0487 -2.0126 -3.6089 20 7 3.5755 -2.2760 -4.7539 21 7 4.1584 -1.1022 -5.2525 22 6 4.8666 -0.9516 -6.5261 23 6 3.9466 -0.1403 -4.3320 24 6 4.3926 1.2968 -4.4159 25 9 4.4370 1.6937 -5.7567 26 9 3.4893 2.1068 -3.7194 27 9 5.6655 1.4238 -3.8495 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.7517 -0.1584 2.1370 32 1 1.6054 -1.7199 1.2952 33 1 3.9824 -0.4629 0.4315 34 1 7.1914 -2.1946 3.0902 35 1 2.4677 -2.7352 -1.0666 36 1 0.7435 -2.3285 -0.8945 37 1 1.5185 -2.2595 -2.4953 38 1 4.1577 -0.6714 -7.3051 39 1 5.6261 -0.1759 -6.4298 40 1 5.3429 -1.8957 -6.7907 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732444347.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:23 Heat of formation + Delta-G solvation = -40.845129 kcal Electronic energy + Delta-G solvation = -31245.125577 eV Core-core repulsion = 26491.503582 eV Total energy + Delta-G solvation = -4753.621996 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.131 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.47990 -48.07561 -47.79664 -42.78055 -39.70636 -36.59982 -35.37682 -34.07589 -32.41717 -31.70128 -30.49175 -28.42341 -26.92680 -26.63186 -25.88529 -24.04775 -22.48884 -22.03339 -21.16208 -19.48743 -18.89233 -18.71213 -18.42028 -17.63879 -17.51998 -16.74926 -16.21224 -15.78532 -15.24917 -14.91638 -14.69269 -14.62719 -14.36082 -14.18522 -14.10821 -14.04327 -13.93854 -13.77709 -13.71920 -13.34366 -12.84498 -12.80164 -12.59921 -12.53799 -12.39320 -12.22297 -11.96978 -11.78364 -11.15699 -10.95923 -10.86348 -10.76438 -10.53254 -10.07513 -9.94563 -9.81782 -9.54517 -8.85199 -8.41098 -7.16918 -5.72373 -3.06381 0.27306 1.23001 1.34691 2.12946 2.91882 3.12077 3.13926 3.43510 3.48720 3.52173 3.53368 3.89373 3.94145 4.01729 4.44480 4.47483 4.65451 4.74445 4.82227 4.99658 5.16398 5.31373 5.42948 5.51475 5.56207 5.59348 5.85124 5.91502 5.94300 6.02828 6.24489 6.26859 6.40081 6.64789 6.82861 7.33289 7.48525 8.04011 8.15640 8.47139 9.26999 10.00202 10.20250 11.46067 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.011785 B = 0.005230 C = 0.004560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2375.402517 B = 5352.589133 C = 6139.179822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.121 3.879 3 H 0.104 0.896 4 C 0.149 3.851 5 N -0.752 5.752 6 C -0.240 4.240 7 H 0.091 0.909 8 C 0.007 3.993 9 N -0.934 5.934 10 Si 0.879 3.121 11 H -0.282 1.282 12 H -0.292 1.292 13 H -0.281 1.281 14 N -0.576 5.576 15 C 0.072 3.928 16 C 0.587 3.413 17 O -0.520 6.520 18 C -0.018 4.018 19 N -0.193 5.193 20 N -0.030 5.030 21 N -0.327 5.327 22 C 0.077 3.923 23 C 0.000 4.000 24 C 0.547 3.453 25 F -0.176 7.176 26 F -0.125 7.125 27 F -0.157 7.157 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.040 0.960 32 H 0.031 0.969 33 H 0.363 0.637 34 H 0.258 0.742 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.746 4.371 -22.444 24.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.019 3.981 3 H 0.122 0.878 4 C 0.021 3.979 5 N -0.398 5.398 6 C -0.369 4.369 7 H 0.109 0.891 8 C -0.188 4.188 9 N -0.583 5.583 10 Si 0.710 3.290 11 H -0.208 1.208 12 H -0.218 1.218 13 H -0.207 1.207 14 N -0.307 5.307 15 C -0.071 4.071 16 C 0.371 3.629 17 O -0.396 6.396 18 C -0.159 4.159 19 N -0.064 5.064 20 N -0.010 5.010 21 N -0.113 5.113 22 C -0.064 4.064 23 C -0.139 4.139 24 C 0.489 3.511 25 F -0.158 7.158 26 F -0.106 7.106 27 F -0.138 7.138 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.057 0.943 32 H 0.049 0.951 33 H 0.196 0.804 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.105 0.895 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -8.777 3.396 -22.409 24.305 hybrid contribution 1.300 1.365 -1.046 2.156 sum -7.477 4.761 -23.455 25.074 Atomic orbital electron populations 1.22060 0.94418 1.02470 1.02390 1.21602 0.93946 0.98542 0.84050 0.87759 1.20994 0.85751 0.97533 0.93612 1.42652 1.01300 1.71378 1.24467 1.19044 0.89804 1.29238 0.98862 0.89121 1.24601 0.96164 1.00636 0.97428 1.69703 1.07225 1.48784 1.32542 0.86619 0.79698 0.79124 0.83559 1.20849 1.21845 1.20733 1.47549 1.48697 1.12971 1.21497 1.22162 1.01474 0.80606 1.02817 1.16726 0.79314 0.85444 0.81383 1.90896 1.56771 1.16066 1.75818 1.21466 1.05408 0.90875 0.98149 1.74957 1.13303 1.12051 1.06062 1.82101 1.10788 1.02306 1.05818 1.50285 1.38075 1.06992 1.15997 1.22523 0.97517 1.06255 0.80080 1.21605 1.05622 0.92397 0.94294 1.16880 0.76482 0.83520 0.74177 1.93208 1.96316 1.92004 1.34232 1.93443 1.66061 1.73198 1.77872 1.93312 1.39590 1.96146 1.84801 0.91998 0.90932 0.92449 0.94258 0.95137 0.80442 0.93151 0.91360 0.90919 0.89483 0.88019 0.88089 0.86902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.18 37.16 0.34 -1.50 16 2 C 0.12 1.97 2.79 -67.93 -0.19 1.78 16 3 H 0.10 1.85 6.90 -51.93 -0.36 1.50 16 4 C 0.15 2.91 5.56 -4.04 -0.02 2.88 16 5 N -0.75 -18.80 5.24 -59.91 -0.31 -19.12 16 6 C -0.24 -7.01 10.47 -15.06 -0.16 -7.17 16 7 H 0.09 2.79 8.06 -52.49 -0.42 2.36 16 8 C 0.01 0.22 5.50 -17.43 -0.10 0.13 16 9 N -0.93 -30.21 13.97 55.49 0.78 -29.43 16 10 Si 0.88 24.00 27.74 -169.99 -4.71 19.28 16 11 H -0.28 -7.71 7.11 56.52 0.40 -7.31 16 12 H -0.29 -7.93 7.11 56.52 0.40 -7.53 16 13 H -0.28 -7.53 6.52 56.52 0.37 -7.16 16 14 N -0.58 -9.65 2.24 -175.16 -0.39 -10.04 16 15 C 0.07 1.05 8.66 59.85 0.52 1.57 16 16 C 0.59 10.64 7.27 -12.47 -0.09 10.55 16 17 O -0.52 -10.39 12.53 5.29 0.07 -10.32 16 18 C -0.02 -0.29 6.67 -83.55 -0.56 -0.84 16 19 N -0.19 -2.94 8.82 32.85 0.29 -2.65 16 20 N -0.03 -0.41 13.78 60.35 0.83 0.42 16 21 N -0.33 -3.67 4.03 -63.59 -0.26 -3.93 16 22 C 0.08 0.43 10.52 59.85 0.63 1.06 16 23 C 0.00 0.00 6.46 -81.88 -0.53 -0.53 16 24 C 0.55 7.24 3.11 36.00 0.11 7.35 16 25 F -0.18 -1.75 15.30 2.25 0.03 -1.72 16 26 F -0.12 -1.91 13.55 2.25 0.03 -1.88 16 27 F -0.16 -2.31 17.30 2.25 0.04 -2.27 16 28 H 0.06 0.67 6.67 -51.93 -0.35 0.32 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.03 0.58 7.84 -51.93 -0.41 0.18 16 33 H 0.36 9.36 4.93 -40.82 -0.20 9.16 16 34 H 0.26 7.98 8.31 -40.82 -0.34 7.65 16 35 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.07 0.88 6.44 -51.93 -0.33 0.55 16 37 H 0.09 1.17 5.38 -51.93 -0.28 0.89 16 38 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.10 0.47 7.07 -51.93 -0.37 0.11 16 40 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 341.88 15.07 5.15 5.15 Total: -1.00 -36.02 341.88 -2.92 -38.94 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -4.42 Total: 2.27 kcal Atomic # 6 Polarization: 15.33 SS G_CDS: -0.04 Total: 15.29 kcal Atomic # 7 Polarization: -65.68 SS G_CDS: 0.93 Total: -64.75 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.07 Total: -10.32 kcal Atomic # 9 Polarization: -5.97 SS G_CDS: 0.10 Total: -5.87 kcal Atomic # 14 Polarization: 24.00 SS G_CDS: -4.71 Total: 19.28 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -36.02 -2.92 -38.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732444347.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.905 kcal (2) G-P(sol) polarization free energy of solvation -36.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds