Wall clock time and date at job start Tue Mar 31 2020 18:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47557 * 2 1 4 4 C 1.53004 * 109.47135 * 120.00237 * 2 1 3 5 5 N 1.46496 * 109.47130 * 174.99723 * 4 2 1 6 6 C 1.36941 * 120.00060 * 179.97438 * 5 4 2 7 7 H 1.08001 * 119.99792 * 0.02562 * 6 5 4 8 8 C 1.38811 * 119.99933 * 180.02562 * 6 5 4 9 9 N 1.31625 * 119.99696 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 120.00365 * 0.02562 * 8 6 5 11 11 H 1.48496 * 109.47209 * 89.99742 * 10 8 6 12 12 H 1.48496 * 109.47258 * 210.00302 * 10 8 6 13 13 H 1.48501 * 109.47008 * 330.00117 * 10 8 6 14 14 N 1.46504 * 109.47094 * 239.99909 * 2 1 3 15 15 C 1.46500 * 119.99671 * 300.00221 * 14 2 1 16 16 C 1.34777 * 119.99893 * 119.99979 * 14 2 1 17 17 O 1.21590 * 120.00004 * 2.01984 * 16 14 2 18 18 C 1.47525 * 119.99819 * 182.01367 * 16 14 2 19 19 N 1.34404 * 125.76900 * 354.50296 * 18 16 14 20 20 N 1.28764 * 109.52145 * 179.97438 * 19 18 16 21 21 N 1.40213 * 108.36495 * 359.97438 * 20 19 18 22 22 C 1.46505 * 126.59368 * 179.97438 * 21 20 19 23 23 C 1.34814 * 106.81216 * 0.22461 * 21 20 19 24 24 C 1.50697 * 126.57737 * 179.77346 * 23 21 20 25 25 F 1.39895 * 109.47212 * 30.03257 * 24 23 21 26 26 F 1.39909 * 109.46810 * 150.02782 * 24 23 21 27 27 F 1.39902 * 109.47367 * 270.02605 * 24 23 21 28 28 H 1.09000 * 109.47048 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46771 * 300.00350 * 1 2 3 30 30 H 1.08995 * 109.46824 * 59.99543 * 1 2 3 31 31 H 1.08998 * 109.47086 * 294.99703 * 4 2 1 32 32 H 1.09000 * 109.47492 * 54.99624 * 4 2 1 33 33 H 0.97002 * 120.00052 * 359.97438 * 5 4 2 34 34 H 0.97004 * 119.99516 * 180.02562 * 9 8 6 35 35 H 1.09001 * 109.47035 * 263.95105 * 15 14 2 36 36 H 1.08991 * 109.47653 * 23.95466 * 15 14 2 37 37 H 1.09005 * 109.47026 * 143.95278 * 15 14 2 38 38 H 1.08998 * 109.47026 * 90.02213 * 22 21 20 39 39 H 1.08990 * 109.46764 * 210.02239 * 22 21 20 40 40 H 1.09001 * 109.46780 * 330.02148 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8265 1.1905 6 6 4.1839 -1.4381 2.2072 7 1 3.6468 -1.8433 3.0520 8 6 5.5673 -1.5373 2.1518 9 7 6.2246 -2.1256 3.1287 10 14 6.4964 -0.8359 0.6909 11 1 6.8571 0.5781 0.9661 12 1 7.7324 -1.6270 0.4641 13 1 5.6380 -0.9011 -0.5192 14 7 2.0184 -0.6906 -1.1962 15 6 1.6643 -2.0932 -1.4280 16 6 2.7932 -0.0356 -2.0834 17 8 3.1173 1.1172 -1.8728 18 6 3.2482 -0.7175 -3.3099 19 7 3.0487 -2.0126 -3.6089 20 7 3.5755 -2.2760 -4.7539 21 7 4.1584 -1.1022 -5.2525 22 6 4.8666 -0.9516 -6.5261 23 6 3.9466 -0.1403 -4.3320 24 6 4.3926 1.2968 -4.4159 25 9 4.4370 1.6937 -5.7567 26 9 3.4893 2.1068 -3.7194 27 9 5.6655 1.4238 -3.8495 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.7517 -0.1584 2.1370 32 1 1.6054 -1.7199 1.2952 33 1 3.9824 -0.4629 0.4315 34 1 7.1914 -2.1946 3.0902 35 1 2.4677 -2.7352 -1.0666 36 1 0.7435 -2.3285 -0.8945 37 1 1.5185 -2.2595 -2.4953 38 1 4.1577 -0.6714 -7.3051 39 1 5.6261 -0.1759 -6.4298 40 1 5.3429 -1.8957 -6.7907 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732444347.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:22 Heat of formation + Delta-G solvation = -66.942982 kcal Electronic energy + Delta-G solvation = -31246.257265 eV Core-core repulsion = 26491.503582 eV Total energy + Delta-G solvation = -4754.753683 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.131 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -51.49985 -49.05623 -48.88911 -43.81554 -41.01131 -38.04471 -36.39429 -35.84061 -33.85767 -33.15274 -32.13396 -29.22179 -28.06558 -27.69407 -27.55163 -25.23637 -24.05827 -23.34463 -22.44224 -20.82447 -19.92441 -19.73913 -19.59461 -19.46167 -18.77581 -17.75964 -17.51354 -16.83838 -16.67338 -16.47569 -15.93312 -15.79209 -15.68342 -15.38661 -15.33213 -15.15328 -15.02447 -14.88017 -14.77952 -14.48072 -14.27699 -14.15219 -14.05372 -13.84513 -13.65151 -13.52217 -13.11816 -13.07627 -12.93190 -12.45183 -12.30820 -12.20488 -11.89006 -11.82267 -11.73316 -11.28018 -11.04525 -10.87653 -9.72137 -9.32133 -8.08766 -5.38377 -0.75616 0.20323 0.31406 1.18246 1.24085 1.28197 1.32324 1.70472 1.86860 2.12132 2.38285 2.52694 2.84857 2.91346 3.00350 3.23896 3.45044 3.57323 3.80844 3.99518 4.12424 4.25893 4.29443 4.32916 4.37886 4.45611 4.71975 4.79799 4.82476 4.88104 4.94750 5.06227 5.14700 5.33769 5.51967 5.72601 6.13893 6.16702 6.34144 6.85855 7.02726 7.81019 7.97736 9.13083 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.011785 B = 0.005230 C = 0.004560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2375.402517 B = 5352.589133 C = 6139.179822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.126 3.874 3 H 0.087 0.913 4 C 0.144 3.856 5 N -0.758 5.758 6 C -0.221 4.221 7 H 0.070 0.930 8 C -0.052 4.052 9 N -0.977 5.977 10 Si 0.937 3.063 11 H -0.283 1.283 12 H -0.289 1.289 13 H -0.277 1.277 14 N -0.579 5.579 15 C 0.076 3.924 16 C 0.578 3.422 17 O -0.548 6.548 18 C -0.045 4.045 19 N -0.206 5.206 20 N -0.034 5.034 21 N -0.305 5.305 22 C 0.058 3.942 23 C -0.001 4.001 24 C 0.552 3.448 25 F -0.153 7.153 26 F -0.138 7.138 27 F -0.167 7.167 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.067 0.933 31 H 0.046 0.954 32 H 0.042 0.958 33 H 0.359 0.641 34 H 0.257 0.743 35 H 0.041 0.959 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.131 0.869 39 H 0.113 0.887 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.751 4.592 -25.002 27.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.023 3.977 3 H 0.105 0.895 4 C 0.017 3.983 5 N -0.403 5.403 6 C -0.352 4.352 7 H 0.088 0.912 8 C -0.244 4.244 9 N -0.628 5.628 10 Si 0.767 3.233 11 H -0.209 1.209 12 H -0.216 1.216 13 H -0.203 1.203 14 N -0.310 5.310 15 C -0.067 4.067 16 C 0.363 3.637 17 O -0.426 6.426 18 C -0.187 4.187 19 N -0.077 5.077 20 N -0.014 5.014 21 N -0.092 5.092 22 C -0.080 4.080 23 C -0.142 4.142 24 C 0.495 3.505 25 F -0.135 7.135 26 F -0.119 7.119 27 F -0.149 7.149 28 H 0.095 0.905 29 H 0.106 0.894 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.191 0.809 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.149 0.851 39 H 0.132 0.868 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -9.828 3.604 -25.012 27.114 hybrid contribution 1.567 1.284 -0.329 2.053 sum -8.261 4.889 -25.341 27.099 Atomic orbital electron populations 1.21996 0.90551 1.03911 1.03702 1.21558 0.96752 0.96913 0.82490 0.89502 1.21258 0.82610 0.98620 0.95788 1.42748 1.03608 1.70785 1.23157 1.19098 0.89899 1.27453 0.98764 0.91228 1.25209 0.97231 1.02111 0.99864 1.69830 1.07378 1.51067 1.34558 0.85681 0.78524 0.78219 0.80888 1.20908 1.21584 1.20345 1.47713 1.48338 1.13679 1.21241 1.22212 1.01494 0.78984 1.03961 1.17081 0.79097 0.85391 0.82153 1.90867 1.57841 1.17222 1.76689 1.21338 1.07349 0.91567 0.98456 1.74911 1.14153 1.11769 1.06864 1.82014 1.10969 1.03033 1.05378 1.50673 1.36447 1.05534 1.16557 1.23163 0.98402 1.08202 0.78229 1.21614 1.05287 0.92927 0.94403 1.16760 0.75777 0.83159 0.74853 1.93250 1.96163 1.91768 1.32279 1.93414 1.66528 1.73553 1.78446 1.93289 1.40214 1.96173 1.85182 0.90456 0.89371 0.91412 0.93594 0.94027 0.80897 0.93339 0.94020 0.88292 0.88323 0.85053 0.86812 0.84611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 9.18 71.98 0.66 -2.36 16 2 C 0.13 3.93 2.79 44.99 0.13 4.05 16 3 H 0.09 3.05 6.90 -2.39 -0.02 3.03 16 4 C 0.14 5.45 5.56 86.38 0.48 5.93 16 5 N -0.76 -37.75 5.24 -343.45 -1.80 -39.55 16 6 C -0.22 -13.04 10.47 84.03 0.88 -12.16 16 7 H 0.07 4.35 8.06 -2.91 -0.02 4.33 16 8 C -0.05 -3.23 5.50 84.86 0.47 -2.76 16 9 N -0.98 -64.32 13.97 21.65 0.30 -64.01 16 10 Si 0.94 50.36 27.74 68.60 1.90 52.26 16 11 H -0.28 -15.08 7.11 99.48 0.71 -14.37 16 12 H -0.29 -15.30 7.11 99.48 0.71 -14.59 16 13 H -0.28 -14.57 6.52 99.48 0.65 -13.92 16 14 N -0.58 -18.87 2.24 -826.34 -1.85 -20.72 16 15 C 0.08 2.11 8.66 127.77 1.11 3.22 16 16 C 0.58 20.72 7.27 86.69 0.63 21.35 16 17 O -0.55 -21.95 12.53 -4.00 -0.05 -22.00 16 18 C -0.05 -1.43 6.67 40.82 0.27 -1.16 16 19 N -0.21 -6.09 8.82 -49.99 -0.44 -6.53 16 20 N -0.03 -0.85 13.78 37.02 0.51 -0.34 16 21 N -0.31 -6.13 4.03 -355.11 -1.43 -7.56 16 22 C 0.06 0.44 10.52 127.77 1.34 1.79 16 23 C 0.00 -0.04 6.46 41.71 0.27 0.23 16 24 C 0.55 13.87 3.11 71.24 0.22 14.09 16 25 F -0.15 -2.68 15.30 44.97 0.69 -1.99 16 26 F -0.14 -4.16 13.55 44.97 0.61 -3.55 16 27 F -0.17 -4.74 17.30 44.97 0.78 -3.96 16 28 H 0.08 1.40 6.67 -2.39 -0.02 1.38 16 29 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.04 1.51 7.84 -2.39 -0.02 1.50 16 33 H 0.36 18.45 4.93 -92.71 -0.46 18.00 16 34 H 0.26 16.21 8.31 -92.71 -0.77 15.44 16 35 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.10 2.16 6.44 -2.39 -0.02 2.15 16 37 H 0.10 2.54 5.38 -2.38 -0.01 2.52 16 38 H 0.13 0.34 8.14 -2.39 -0.02 0.32 16 39 H 0.11 0.66 7.07 -2.39 -0.02 0.64 16 40 H 0.14 0.50 8.14 -2.39 -0.02 0.48 16 Total: -1.00 -79.15 341.88 6.27 -72.88 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: 0.60 Total: 12.85 kcal Atomic # 6 Polarization: 25.76 SS G_CDS: 6.46 Total: 32.21 kcal Atomic # 7 Polarization: -134.00 SS G_CDS: -4.71 Total: -138.71 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -0.05 Total: -22.00 kcal Atomic # 9 Polarization: -11.58 SS G_CDS: 2.08 Total: -9.50 kcal Atomic # 14 Polarization: 50.36 SS G_CDS: 1.90 Total: 52.26 kcal Total: -79.15 6.27 -72.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732444347.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.941 kcal (2) G-P(sol) polarization free energy of solvation -79.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds