Wall clock time and date at job start Tue Mar 31 2020 18:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08993 * 109.47373 * 2 1 4 4 C 1.53002 * 109.47253 * 239.99558 * 2 1 3 5 5 C 1.53000 * 109.47058 * 175.00347 * 4 2 1 6 6 N 1.46503 * 109.46949 * 180.02562 * 5 4 2 7 7 C 1.36932 * 119.99750 * 179.97438 * 6 5 4 8 8 H 1.08005 * 120.00580 * 0.02562 * 7 6 5 9 9 C 1.38817 * 119.99721 * 179.97438 * 7 6 5 10 10 N 1.31622 * 119.99616 * 180.02562 * 9 7 6 11 11 Si 1.86788 * 120.00076 * 0.02562 * 9 7 6 12 12 H 1.48502 * 109.47377 * 89.99945 * 11 9 7 13 13 H 1.48502 * 109.47388 * 209.99918 * 11 9 7 14 14 H 1.48504 * 109.47544 * 329.99833 * 11 9 7 15 15 N 1.46509 * 109.46968 * 119.99798 * 2 1 3 16 16 C 1.34779 * 119.99711 * 275.00296 * 15 2 1 17 17 O 1.21590 * 119.99959 * 359.97438 * 16 15 2 18 18 C 1.47521 * 119.99606 * 179.97438 * 16 15 2 19 19 N 1.34396 * 125.77323 * 359.97438 * 18 16 15 20 20 N 1.28761 * 109.52683 * 179.97438 * 19 18 16 21 21 N 1.40213 * 108.36271 * 359.97438 * 20 19 18 22 22 C 1.46506 * 126.59093 * 179.97438 * 21 20 19 23 23 C 1.34812 * 106.81518 * 0.22517 * 21 20 19 24 24 C 1.50697 * 126.58345 * 179.77314 * 23 21 20 25 25 F 1.39897 * 109.47109 * 30.02599 * 24 23 21 26 26 F 1.39903 * 109.47148 * 150.02263 * 24 23 21 27 27 F 1.39896 * 109.47415 * 270.02564 * 24 23 21 28 28 H 1.08998 * 109.47798 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47311 * 300.00874 * 1 2 3 30 30 H 1.09004 * 109.46843 * 60.00297 * 1 2 3 31 31 H 1.08996 * 109.46969 * 295.00436 * 4 2 1 32 32 H 1.08991 * 109.47022 * 55.00416 * 4 2 1 33 33 H 1.09005 * 109.47042 * 299.99874 * 5 4 2 34 34 H 1.08999 * 109.47106 * 59.99846 * 5 4 2 35 35 H 0.97001 * 119.99760 * 359.97438 * 6 5 4 36 36 H 0.96998 * 119.99943 * 180.02562 * 10 9 7 37 37 H 0.96994 * 119.99788 * 94.99596 * 15 2 1 38 38 H 1.09001 * 109.47060 * 90.02961 * 22 21 20 39 39 H 1.09004 * 109.47073 * 210.02449 * 22 21 20 40 40 H 1.09000 * 109.47212 * 330.02532 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3136 6 7 4.0531 -1.3036 -2.5100 7 6 5.3951 -1.3395 -2.7799 8 1 6.0937 -0.8593 -2.1106 9 6 5.8578 -1.9939 -3.9133 10 7 7.1478 -2.0288 -4.1725 11 14 4.6498 -2.8250 -5.0705 12 1 4.2146 -1.8577 -6.1099 13 1 5.3066 -3.9875 -5.7204 14 1 3.4678 -3.2904 -4.3015 15 7 2.0183 -0.6906 1.1963 16 6 2.1469 -0.0182 2.3572 17 8 1.8581 1.1617 2.4116 18 6 2.6381 -0.7137 3.5619 19 7 2.9886 -2.0092 3.6331 20 7 3.3713 -2.2863 4.8309 21 7 3.2752 -1.1218 5.6058 22 6 3.6099 -0.9876 7.0258 23 6 2.8101 -0.1507 4.7946 24 6 2.5353 1.2816 5.1740 25 9 3.4054 1.6676 6.1992 26 9 2.7324 2.1051 4.0604 27 9 1.2130 1.4018 5.6147 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.7516 -1.7716 -1.2055 32 1 1.6055 -0.2619 -2.1369 33 1 3.8532 0.4369 -1.3573 34 1 3.9994 -1.0729 -0.4258 35 1 3.4258 -1.7352 -3.1109 36 1 7.4711 -2.4858 -4.9646 37 1 2.2489 -1.6317 1.1527 38 1 4.6584 -0.7071 7.1270 39 1 2.9829 -0.2179 7.4758 40 1 3.4376 -1.9379 7.5311 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732734563.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:09 Heat of formation + Delta-G solvation = -66.507766 kcal Electronic energy + Delta-G solvation = -29527.484763 eV Core-core repulsion = 24772.749952 eV Total energy + Delta-G solvation = -4754.734811 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.131 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -50.62848 -48.23330 -47.93839 -42.90447 -39.74183 -36.69072 -35.45317 -34.50275 -32.50098 -31.88638 -30.89294 -28.57264 -28.24275 -26.91543 -24.48598 -23.71982 -22.46037 -21.54340 -21.10416 -20.56684 -19.10546 -19.05379 -18.70606 -18.04410 -17.48304 -16.86852 -16.34935 -16.00179 -15.21500 -15.06680 -14.80575 -14.63390 -14.50936 -14.44573 -14.30145 -14.13294 -14.08212 -13.85130 -13.82284 -13.63903 -13.41337 -13.31771 -12.61254 -12.57253 -12.39669 -12.05293 -11.90887 -11.50453 -11.22505 -11.12328 -10.88492 -10.72864 -10.50738 -10.20979 -10.12227 -9.99846 -9.56692 -9.12088 -8.86052 -7.20659 -5.73984 -3.09623 0.12409 1.08619 1.18371 1.98149 2.84231 2.93205 3.00441 3.37867 3.39304 3.41740 3.47113 3.73667 3.78709 3.92817 4.33664 4.37640 4.61487 4.64536 4.72615 4.78679 5.07859 5.15526 5.26369 5.42950 5.52413 5.63113 5.65529 5.79569 5.93041 5.94673 6.16111 6.21977 6.40185 6.74374 6.77157 7.14402 7.43748 7.99919 8.02577 8.44944 9.24143 9.96278 10.16082 11.44590 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.016575 B = 0.002816 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.865970 B = 9941.526147 C =10584.667769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.146 3.854 3 H 0.096 0.904 4 C -0.140 4.140 5 C 0.156 3.844 6 N -0.757 5.757 7 C -0.243 4.243 8 H 0.089 0.911 9 C 0.003 3.997 10 N -0.935 5.935 11 Si 0.887 3.113 12 H -0.284 1.284 13 H -0.291 1.291 14 H -0.277 1.277 15 N -0.696 5.696 16 C 0.593 3.407 17 O -0.518 6.518 18 C -0.027 4.027 19 N -0.195 5.195 20 N -0.023 5.023 21 N -0.327 5.327 22 C 0.076 3.924 23 C 0.003 3.997 24 C 0.546 3.454 25 F -0.175 7.175 26 F -0.121 7.121 27 F -0.162 7.162 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.028 0.972 34 H 0.027 0.973 35 H 0.361 0.639 36 H 0.259 0.741 37 H 0.411 0.589 38 H 0.103 0.897 39 H 0.101 0.899 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.076 4.510 25.533 29.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.042 3.958 3 H 0.114 0.886 4 C -0.178 4.178 5 C 0.029 3.971 6 N -0.402 5.402 7 C -0.373 4.373 8 H 0.107 0.893 9 C -0.193 4.193 10 N -0.583 5.583 11 Si 0.717 3.283 12 H -0.211 1.211 13 H -0.218 1.218 14 H -0.203 1.203 15 N -0.347 5.347 16 C 0.375 3.625 17 O -0.392 6.392 18 C -0.168 4.168 19 N -0.066 5.066 20 N -0.003 5.003 21 N -0.113 5.113 22 C -0.065 4.065 23 C -0.137 4.137 24 C 0.489 3.511 25 F -0.156 7.156 26 F -0.102 7.102 27 F -0.143 7.143 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.046 0.954 34 H 0.045 0.955 35 H 0.193 0.807 36 H 0.069 0.931 37 H 0.247 0.753 38 H 0.122 0.878 39 H 0.120 0.880 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -13.645 3.942 25.616 29.290 hybrid contribution -0.711 -0.074 -0.571 0.915 sum -14.356 3.868 25.045 29.126 Atomic orbital electron populations 1.22172 0.95023 1.02218 1.02586 1.21076 0.93826 0.97892 0.83042 0.88638 1.22128 0.98159 1.00992 0.96522 1.20636 0.90122 0.96076 0.90254 1.42704 1.05324 1.66145 1.26075 1.19068 0.82259 1.29293 1.06719 0.89309 1.24687 0.95627 1.00693 0.98285 1.69709 1.11746 1.48329 1.28540 0.86511 0.80874 0.79425 0.81485 1.21095 1.21771 1.20314 1.45895 1.65334 1.14735 1.08776 1.16666 0.78325 0.85839 0.81649 1.90918 1.50216 1.13917 1.84194 1.21497 1.09552 0.91166 0.94618 1.74799 1.08500 1.11955 1.11375 1.82147 1.19400 1.02634 0.96121 1.50349 1.42132 1.07086 1.11729 1.22552 1.04199 1.06306 0.73409 1.21642 1.06459 0.92209 0.93398 1.16898 0.74902 0.83587 0.75754 1.93225 1.69818 1.92239 1.60325 1.93485 1.94411 1.72354 1.49909 1.93277 1.35258 1.96270 1.89484 0.92397 0.92151 0.91264 0.91200 0.89988 0.95442 0.95472 0.80693 0.93087 0.75332 0.87838 0.88032 0.86860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 9.48 37.16 0.35 -1.36 16 2 C 0.15 1.84 2.57 -67.93 -0.17 1.66 16 3 H 0.10 1.32 7.58 -51.93 -0.39 0.92 16 4 C -0.14 -1.99 4.87 -26.73 -0.13 -2.12 16 5 C 0.16 3.01 6.15 -4.04 -0.02 2.99 16 6 N -0.76 -18.17 5.41 -59.90 -0.32 -18.50 16 7 C -0.24 -7.05 10.47 -15.06 -0.16 -7.21 16 8 H 0.09 2.77 8.06 -52.48 -0.42 2.35 16 9 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 10 N -0.94 -29.84 13.97 55.49 0.78 -29.07 16 11 Si 0.89 22.27 27.73 -169.99 -4.71 17.56 16 12 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 13 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 14 H -0.28 -6.48 6.52 56.52 0.37 -6.12 16 15 N -0.70 -8.93 4.53 -54.85 -0.25 -9.18 16 16 C 0.59 8.16 7.73 -12.48 -0.10 8.07 16 17 O -0.52 -7.96 12.70 5.29 0.07 -7.89 16 18 C -0.03 -0.34 6.97 -83.55 -0.58 -0.92 16 19 N -0.19 -2.53 12.04 32.85 0.40 -2.14 16 20 N -0.02 -0.26 13.78 60.35 0.83 0.57 16 21 N -0.33 -2.92 4.03 -63.58 -0.26 -3.17 16 22 C 0.08 0.28 10.52 59.85 0.63 0.91 16 23 C 0.00 0.03 6.46 -81.88 -0.53 -0.50 16 24 C 0.55 5.54 3.15 36.00 0.11 5.65 16 25 F -0.17 -1.41 15.30 2.25 0.03 -1.38 16 26 F -0.12 -1.55 13.40 2.25 0.03 -1.52 16 27 F -0.16 -1.61 17.30 2.25 0.04 -1.57 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.03 0.54 7.75 -51.93 -0.40 0.14 16 35 H 0.36 8.33 5.53 -40.82 -0.23 8.10 16 36 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 37 H 0.41 5.04 8.29 -40.82 -0.34 4.70 16 38 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.10 0.23 7.07 -51.93 -0.37 -0.13 16 40 H 0.11 0.20 8.14 -51.93 -0.42 -0.22 16 LS Contribution 352.52 15.07 5.31 5.31 Total: -1.00 -35.00 352.52 -3.45 -38.45 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -4.70 Total: 5.37 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: -0.70 Total: 7.16 kcal Atomic # 7 Polarization: -62.66 SS G_CDS: 1.17 Total: -61.49 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: 0.07 Total: -7.89 kcal Atomic # 9 Polarization: -4.57 SS G_CDS: 0.10 Total: -4.47 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.71 Total: 17.56 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -35.00 -3.45 -38.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732734563.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.055 kcal (2) G-P(sol) polarization free energy of solvation -34.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds