Wall clock time and date at job start Tue Mar 31 2020 18:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08993 * 109.47373 * 2 1 4 4 C 1.53002 * 109.47253 * 239.99558 * 2 1 3 5 5 C 1.53000 * 109.47058 * 175.00347 * 4 2 1 6 6 N 1.46503 * 109.46949 * 180.02562 * 5 4 2 7 7 C 1.36932 * 119.99750 * 179.97438 * 6 5 4 8 8 H 1.08005 * 120.00580 * 0.02562 * 7 6 5 9 9 C 1.38817 * 119.99721 * 179.97438 * 7 6 5 10 10 N 1.31622 * 119.99616 * 180.02562 * 9 7 6 11 11 Si 1.86788 * 120.00076 * 0.02562 * 9 7 6 12 12 H 1.48502 * 109.47377 * 89.99945 * 11 9 7 13 13 H 1.48502 * 109.47388 * 209.99918 * 11 9 7 14 14 H 1.48504 * 109.47544 * 329.99833 * 11 9 7 15 15 N 1.46509 * 109.46968 * 119.99798 * 2 1 3 16 16 C 1.34779 * 119.99711 * 275.00296 * 15 2 1 17 17 O 1.21590 * 119.99959 * 359.97438 * 16 15 2 18 18 C 1.47521 * 119.99606 * 179.97438 * 16 15 2 19 19 N 1.34396 * 125.77323 * 359.97438 * 18 16 15 20 20 N 1.28761 * 109.52683 * 179.97438 * 19 18 16 21 21 N 1.40213 * 108.36271 * 359.97438 * 20 19 18 22 22 C 1.46506 * 126.59093 * 179.97438 * 21 20 19 23 23 C 1.34812 * 106.81518 * 0.22517 * 21 20 19 24 24 C 1.50697 * 126.58345 * 179.77314 * 23 21 20 25 25 F 1.39897 * 109.47109 * 30.02599 * 24 23 21 26 26 F 1.39903 * 109.47148 * 150.02263 * 24 23 21 27 27 F 1.39896 * 109.47415 * 270.02564 * 24 23 21 28 28 H 1.08998 * 109.47798 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47311 * 300.00874 * 1 2 3 30 30 H 1.09004 * 109.46843 * 60.00297 * 1 2 3 31 31 H 1.08996 * 109.46969 * 295.00436 * 4 2 1 32 32 H 1.08991 * 109.47022 * 55.00416 * 4 2 1 33 33 H 1.09005 * 109.47042 * 299.99874 * 5 4 2 34 34 H 1.08999 * 109.47106 * 59.99846 * 5 4 2 35 35 H 0.97001 * 119.99760 * 359.97438 * 6 5 4 36 36 H 0.96998 * 119.99943 * 180.02562 * 10 9 7 37 37 H 0.96994 * 119.99788 * 94.99596 * 15 2 1 38 38 H 1.09001 * 109.47060 * 90.02961 * 22 21 20 39 39 H 1.09004 * 109.47073 * 210.02449 * 22 21 20 40 40 H 1.09000 * 109.47212 * 330.02532 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3136 6 7 4.0531 -1.3036 -2.5100 7 6 5.3951 -1.3395 -2.7799 8 1 6.0937 -0.8593 -2.1106 9 6 5.8578 -1.9939 -3.9133 10 7 7.1478 -2.0288 -4.1725 11 14 4.6498 -2.8250 -5.0705 12 1 4.2146 -1.8577 -6.1099 13 1 5.3066 -3.9875 -5.7204 14 1 3.4678 -3.2904 -4.3015 15 7 2.0183 -0.6906 1.1963 16 6 2.1469 -0.0182 2.3572 17 8 1.8581 1.1617 2.4116 18 6 2.6381 -0.7137 3.5619 19 7 2.9886 -2.0092 3.6331 20 7 3.3713 -2.2863 4.8309 21 7 3.2752 -1.1218 5.6058 22 6 3.6099 -0.9876 7.0258 23 6 2.8101 -0.1507 4.7946 24 6 2.5353 1.2816 5.1740 25 9 3.4054 1.6676 6.1992 26 9 2.7324 2.1051 4.0604 27 9 1.2130 1.4018 5.6147 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.7516 -1.7716 -1.2055 32 1 1.6055 -0.2619 -2.1369 33 1 3.8532 0.4369 -1.3573 34 1 3.9994 -1.0729 -0.4258 35 1 3.4258 -1.7352 -3.1109 36 1 7.4711 -2.4858 -4.9646 37 1 2.2489 -1.6317 1.1527 38 1 4.6584 -0.7071 7.1270 39 1 2.9829 -0.2179 7.4758 40 1 3.4376 -1.9379 7.5311 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732734563.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:09 Heat of formation + Delta-G solvation = -93.183358 kcal Electronic energy + Delta-G solvation = -29528.641504 eV Core-core repulsion = 24772.749952 eV Total energy + Delta-G solvation = -4755.891551 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.131 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -51.43427 -48.99255 -48.81898 -43.74816 -40.79040 -37.97677 -36.30218 -36.09332 -33.80468 -33.28817 -32.24562 -29.77113 -29.13291 -27.68876 -25.80493 -25.08417 -23.36323 -23.03865 -22.28956 -21.59969 -20.00270 -19.85536 -19.64259 -19.49533 -18.86199 -17.67121 -17.38688 -16.82549 -16.59577 -16.13162 -15.86091 -15.78127 -15.58684 -15.57184 -15.34270 -15.15808 -15.01284 -14.91837 -14.79074 -14.63763 -14.42523 -14.28615 -14.05665 -13.84355 -13.30963 -13.17182 -12.96111 -12.91761 -12.71657 -12.39161 -12.17291 -11.98899 -11.84066 -11.83154 -11.72872 -11.28318 -10.97224 -10.86508 -10.14847 -9.30483 -8.02869 -5.37481 -0.70389 0.24047 0.35888 1.23236 1.39503 1.44572 1.51924 1.87375 1.94617 2.19069 2.49898 2.56675 2.92678 2.98891 3.11836 3.28400 3.45803 3.53018 3.99083 4.03115 4.12583 4.15002 4.27818 4.36164 4.48982 4.57087 4.62722 4.78024 4.79094 4.87273 5.01798 5.18611 5.27393 5.35979 5.48696 5.74305 6.20828 6.21243 6.47308 6.97455 7.07998 7.82728 8.04417 9.18957 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.016575 B = 0.002816 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.865970 B = 9941.526147 C =10584.667769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.150 3.850 3 H 0.081 0.919 4 C -0.124 4.124 5 C 0.153 3.847 6 N -0.757 5.757 7 C -0.241 4.241 8 H 0.048 0.952 9 C -0.067 4.067 10 N -0.986 5.986 11 Si 0.963 3.037 12 H -0.276 1.276 13 H -0.296 1.296 14 H -0.245 1.245 15 N -0.695 5.695 16 C 0.591 3.409 17 O -0.539 6.539 18 C -0.047 4.047 19 N -0.215 5.215 20 N -0.036 5.036 21 N -0.307 5.307 22 C 0.058 3.942 23 C 0.003 3.997 24 C 0.553 3.447 25 F -0.160 7.160 26 F -0.139 7.139 27 F -0.159 7.159 28 H 0.069 0.931 29 H 0.052 0.948 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.015 0.985 34 H 0.019 0.981 35 H 0.369 0.631 36 H 0.259 0.741 37 H 0.413 0.587 38 H 0.122 0.878 39 H 0.120 0.880 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.412 3.888 26.364 31.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.045 3.955 3 H 0.099 0.901 4 C -0.162 4.162 5 C 0.027 3.973 6 N -0.403 5.403 7 C -0.372 4.372 8 H 0.066 0.934 9 C -0.258 4.258 10 N -0.637 5.637 11 Si 0.789 3.211 12 H -0.202 1.202 13 H -0.223 1.223 14 H -0.169 1.169 15 N -0.346 5.346 16 C 0.374 3.626 17 O -0.415 6.415 18 C -0.189 4.189 19 N -0.085 5.085 20 N -0.016 5.016 21 N -0.094 5.094 22 C -0.080 4.080 23 C -0.138 4.138 24 C 0.495 3.505 25 F -0.141 7.141 26 F -0.120 7.120 27 F -0.140 7.140 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.115 0.885 33 H 0.033 0.967 34 H 0.038 0.962 35 H 0.203 0.797 36 H 0.067 0.933 37 H 0.250 0.750 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -16.017 3.314 26.503 31.144 hybrid contribution 0.127 0.197 -0.629 0.671 sum -15.890 3.511 25.875 30.567 Atomic orbital electron populations 1.22092 0.92837 1.03137 1.03011 1.21032 0.95363 0.96803 0.82254 0.90063 1.21998 0.93918 1.02358 0.97944 1.20774 0.93839 0.94563 0.88106 1.42666 1.03483 1.66556 1.27611 1.19021 0.84055 1.28214 1.05880 0.93364 1.25623 0.97735 1.01984 1.00472 1.69911 1.14419 1.49884 1.29450 0.85293 0.79021 0.77862 0.78898 1.20195 1.22295 1.16905 1.45924 1.65114 1.14822 1.08724 1.16829 0.78019 0.85664 0.82134 1.90901 1.51274 1.14712 1.84637 1.21435 1.10979 0.91478 0.95029 1.74763 1.09288 1.12220 1.12253 1.82061 1.19841 1.03631 0.96077 1.50707 1.39955 1.05764 1.12950 1.23143 1.05707 1.08461 0.70681 1.21680 1.06249 0.92690 0.93217 1.16741 0.75170 0.82974 0.75575 1.93253 1.69317 1.92066 1.59441 1.93447 1.94546 1.72846 1.51123 1.93281 1.35165 1.96215 1.89364 0.91200 0.92852 0.89712 0.89749 0.88456 0.96657 0.96245 0.79710 0.93267 0.75023 0.85994 0.86198 0.84513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.48 71.98 0.68 -2.20 16 2 C 0.15 3.58 2.57 44.99 0.12 3.70 16 3 H 0.08 2.21 7.58 -2.39 -0.02 2.19 16 4 C -0.12 -3.26 4.87 30.59 0.15 -3.11 16 5 C 0.15 5.85 6.15 86.38 0.53 6.38 16 6 N -0.76 -35.69 5.41 -343.44 -1.86 -37.55 16 7 C -0.24 -14.18 10.47 84.04 0.88 -13.30 16 8 H 0.05 3.16 8.06 -2.91 -0.02 3.14 16 9 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 10 N -0.99 -64.51 13.97 21.65 0.30 -64.21 16 11 Si 0.96 45.41 27.73 68.60 1.90 47.32 16 12 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 13 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 14 H -0.24 -10.16 6.52 99.48 0.65 -9.51 16 15 N -0.69 -17.52 4.53 -445.71 -2.02 -19.54 16 16 C 0.59 16.32 7.73 86.69 0.67 16.99 16 17 O -0.54 -16.71 12.70 -4.00 -0.05 -16.76 16 18 C -0.05 -1.19 6.97 40.82 0.28 -0.90 16 19 N -0.21 -5.55 12.04 -49.99 -0.60 -6.15 16 20 N -0.04 -0.80 13.78 37.02 0.51 -0.29 16 21 N -0.31 -5.03 4.03 -355.08 -1.43 -6.47 16 22 C 0.06 0.28 10.52 127.77 1.34 1.62 16 23 C 0.00 0.06 6.46 41.72 0.27 0.33 16 24 C 0.55 10.70 3.15 71.23 0.22 10.92 16 25 F -0.16 -2.30 15.30 44.97 0.69 -1.61 16 26 F -0.14 -3.56 13.40 44.97 0.60 -2.96 16 27 F -0.16 -2.98 17.30 44.97 0.78 -2.20 16 28 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.02 0.63 8.14 -2.38 -0.02 0.61 16 34 H 0.02 0.78 7.75 -2.39 -0.02 0.76 16 35 H 0.37 16.06 5.53 -92.71 -0.51 15.55 16 36 H 0.26 16.01 8.31 -92.71 -0.77 15.24 16 37 H 0.41 9.94 8.29 -92.71 -0.77 9.17 16 38 H 0.12 0.24 8.14 -2.39 -0.02 0.22 16 39 H 0.12 0.20 7.07 -2.38 -0.02 0.18 16 40 H 0.14 0.08 8.14 -2.39 -0.02 0.06 16 Total: -1.00 -77.64 352.52 4.22 -73.42 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: -0.22 Total: 20.12 kcal Atomic # 6 Polarization: 11.26 SS G_CDS: 5.62 Total: 16.87 kcal Atomic # 7 Polarization: -129.10 SS G_CDS: -5.10 Total: -134.20 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -0.05 Total: -16.76 kcal Atomic # 9 Polarization: -8.84 SS G_CDS: 2.07 Total: -6.77 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.90 Total: 47.32 kcal Total: -77.64 4.22 -73.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732734563.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.766 kcal (2) G-P(sol) polarization free energy of solvation -77.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds