Wall clock time and date at job start Tue Mar 31 2020 18:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46500 * 120.00058 * 2 1 4 4 C 1.52998 * 109.47301 * 270.00194 * 3 2 1 5 5 H 1.09004 * 109.47434 * 59.99507 * 4 3 2 6 6 O 1.42900 * 109.47044 * 299.99801 * 4 3 2 7 7 C 1.52997 * 109.47589 * 179.97438 * 4 3 2 8 8 N 1.46499 * 109.47817 * 184.99880 * 7 4 3 9 9 C 1.36928 * 120.00503 * 179.72650 * 8 7 4 10 10 H 1.08006 * 119.99765 * 0.27910 * 9 8 7 11 11 C 1.38812 * 120.00254 * 180.27437 * 9 8 7 12 12 N 1.31620 * 119.99889 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 120.00112 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47055 * 60.00062 * 13 11 9 15 15 H 1.48497 * 109.46812 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.46875 * 299.99914 * 13 11 9 17 17 C 1.34777 * 120.00729 * 180.02562 * 2 1 3 18 18 O 1.21642 * 120.00427 * 180.15896 * 17 2 1 19 19 C 1.47056 * 119.99598 * 0.15824 * 17 2 1 20 20 C 1.35872 * 125.43069 * 190.05466 * 19 17 2 21 21 C 1.41593 * 107.74090 * 179.90495 * 20 19 17 22 22 C 1.40126 * 133.34898 * 180.10196 * 21 20 19 23 23 C 1.36614 * 119.81111 * 180.28056 * 22 21 20 24 24 F 1.35097 * 119.71587 * 180.02562 * 23 22 21 25 25 C 1.39127 * 120.56260 * 359.97438 * 23 22 21 26 26 C 1.37663 * 120.62758 * 359.97438 * 25 23 22 27 27 C 1.39214 * 119.83909 * 0.03311 * 26 25 23 28 28 N 1.37574 * 133.15069 * 179.97438 * 27 26 25 29 29 H 0.97005 * 125.61114 * 0.02562 * 28 27 26 30 30 H 1.09002 * 109.47262 * 96.26524 * 1 2 3 31 31 H 1.09002 * 109.46860 * 216.25726 * 1 2 3 32 32 H 1.08996 * 109.47652 * 336.25623 * 1 2 3 33 33 H 1.08996 * 109.47868 * 149.99663 * 3 2 1 34 34 H 1.09003 * 109.47146 * 29.99614 * 3 2 1 35 35 H 0.96697 * 114.00107 * 299.99409 * 6 4 3 36 36 H 1.09002 * 109.46542 * 64.99911 * 7 4 3 37 37 H 1.09000 * 109.47126 * 305.00299 * 7 4 3 38 38 H 0.97000 * 119.99234 * 359.97438 * 8 7 4 39 39 H 0.96998 * 119.99853 * 179.97438 * 12 11 9 40 40 H 1.08000 * 126.13194 * 0.02562 * 20 19 17 41 41 H 1.08003 * 120.09378 * 0.29481 * 22 21 20 42 42 H 1.07997 * 119.68475 * 180.02562 * 25 23 22 43 43 H 1.07997 * 120.07872 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7104 -1.4425 5 1 1.5000 1.8407 -1.9564 6 8 3.2248 0.7146 -2.1161 7 6 3.2169 3.0358 -1.4425 8 7 3.3568 3.5189 -2.8185 9 6 4.0057 4.6987 -3.0673 10 1 4.4183 5.2709 -2.2494 11 6 4.1333 5.1593 -4.3705 12 7 3.6301 4.4622 -5.3671 13 14 5.0192 6.7685 -4.7099 14 1 6.4192 6.6749 -4.2239 15 1 5.0185 7.0352 -6.1708 16 1 4.3233 7.8749 -4.0050 17 6 2.1390 -1.1671 -0.0005 18 8 3.3554 -1.1671 0.0024 19 6 1.4038 -2.4407 -0.0046 20 6 1.9536 -3.6682 0.1877 21 6 0.9121 -4.6244 0.1106 22 6 0.8771 -6.0202 0.2292 23 6 -0.3100 -6.6834 0.0974 24 9 -0.3417 -8.0290 0.2127 25 6 -1.4867 -5.9847 -0.1533 26 6 -1.4762 -4.6133 -0.2726 27 6 -0.2784 -3.9158 -0.1423 28 7 0.0447 -2.5802 -0.2089 29 1 -0.5791 -1.8556 -0.3727 30 1 -0.3634 -0.1122 -1.0215 31 1 -0.3633 -0.8287 0.6078 32 1 -0.3634 0.9406 0.4138 33 1 3.1498 1.1385 0.5138 34 1 1.6083 2.0284 0.5138 35 1 4.0873 0.5462 -1.7127 36 1 4.2052 2.8851 -1.0081 37 1 2.6692 3.7711 -0.8532 38 1 2.9866 3.0047 -3.5529 39 1 3.7189 4.7842 -6.2777 40 1 2.9976 -3.8771 0.3691 41 1 1.7859 -6.5701 0.4244 42 1 -2.4173 -6.5232 -0.2545 43 1 -2.3948 -4.0798 -0.4669 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734523658.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:38 Heat of formation + Delta-G solvation = -30.501992 kcal Electronic energy + Delta-G solvation = -27885.672164 eV Core-core repulsion = 23654.435460 eV Total energy + Delta-G solvation = -4231.236705 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.08378 -42.10261 -39.87257 -37.44132 -36.89852 -35.58378 -34.01950 -32.68058 -31.39933 -30.26109 -29.58121 -28.94387 -27.31845 -25.88795 -24.04928 -22.70395 -22.44528 -21.43925 -21.11014 -20.24641 -18.08584 -18.03094 -17.26654 -17.18254 -16.64884 -16.30958 -15.97847 -15.83298 -15.40387 -14.97843 -14.89165 -14.54589 -14.40454 -14.27810 -13.91145 -13.65563 -13.53464 -13.41324 -13.37838 -13.02531 -12.89928 -12.64576 -12.38796 -12.19370 -11.64256 -11.54338 -11.34420 -10.96056 -10.81495 -10.76226 -10.35914 -10.33166 -10.20314 -9.81180 -9.69646 -8.90647 -8.78287 -8.53799 -8.19188 -6.93823 -5.75960 -3.05691 0.30000 1.02184 1.73699 2.42163 2.71087 3.07305 3.33501 3.43372 3.47538 3.49033 3.91557 4.12854 4.17960 4.42416 4.51588 4.55934 4.76091 4.76887 4.79760 4.88348 4.92073 5.02522 5.09012 5.21109 5.24927 5.48752 5.52421 5.57671 5.58763 5.63601 5.78153 5.81217 5.92389 6.04195 6.17859 6.24716 6.29549 6.48333 6.59989 6.69360 6.90706 7.03536 7.67091 7.86266 8.14782 8.42164 9.53373 10.10896 10.46344 11.46337 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.028453 B = 0.001956 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.835025 B =14310.658767 C =14389.646783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.604 5.604 3 C 0.085 3.915 4 C 0.086 3.914 5 H 0.095 0.905 6 O -0.548 6.548 7 C 0.126 3.874 8 N -0.725 5.725 9 C -0.244 4.244 10 H 0.069 0.931 11 C -0.013 4.013 12 N -0.930 5.930 13 Si 0.909 3.091 14 H -0.285 1.285 15 H -0.291 1.291 16 H -0.286 1.286 17 C 0.588 3.412 18 O -0.510 6.510 19 C 0.036 3.964 20 C -0.111 4.111 21 C -0.093 4.093 22 C -0.098 4.098 23 C 0.069 3.931 24 F -0.143 7.143 25 C -0.124 4.124 26 C -0.098 4.098 27 C 0.094 3.906 28 N -0.581 5.581 29 H 0.425 0.575 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.375 0.625 36 H 0.022 0.978 37 H 0.024 0.976 38 H 0.388 0.612 39 H 0.256 0.744 40 H 0.160 0.840 41 H 0.138 0.862 42 H 0.140 0.860 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.535 -19.654 15.840 28.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.337 5.337 3 C -0.038 4.038 4 C 0.025 3.975 5 H 0.113 0.887 6 O -0.353 6.353 7 C -0.002 4.002 8 N -0.370 5.370 9 C -0.375 4.375 10 H 0.087 0.913 11 C -0.209 4.209 12 N -0.578 5.578 13 Si 0.740 3.260 14 H -0.212 1.212 15 H -0.217 1.217 16 H -0.213 1.213 17 C 0.375 3.625 18 O -0.385 6.385 19 C -0.074 4.074 20 C -0.138 4.138 21 C -0.098 4.098 22 C -0.117 4.117 23 C 0.049 3.951 24 F -0.122 7.122 25 C -0.144 4.144 26 C -0.118 4.118 27 C -0.016 4.016 28 N -0.194 5.194 29 H 0.273 0.727 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.223 0.777 36 H 0.040 0.960 37 H 0.042 0.958 38 H 0.222 0.778 39 H 0.066 0.934 40 H 0.177 0.823 41 H 0.156 0.844 42 H 0.158 0.842 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -13.376 -19.349 15.440 28.137 hybrid contribution 0.320 0.971 -0.244 1.051 sum -13.056 -18.379 15.195 27.187 Atomic orbital electron populations 1.22281 0.80575 1.04199 1.01993 1.47561 1.06376 1.06268 1.73478 1.22397 0.98460 0.83778 0.99166 1.22495 0.95847 0.88505 0.90689 0.88680 1.86551 1.33167 1.58794 1.56801 1.21231 0.96838 0.92332 0.89844 1.42229 1.68334 1.25059 1.01357 1.19172 1.28521 0.97622 0.92205 0.91290 1.24771 1.01477 0.99051 0.95626 1.69670 1.50258 1.39212 0.98692 0.86249 0.79539 0.83354 0.76902 1.21219 1.21653 1.21288 1.17095 0.86790 0.81743 0.76856 1.90830 1.12222 1.86207 1.49196 1.20235 0.82645 0.95507 1.08972 1.20881 0.99436 0.89001 1.04471 1.17896 0.93008 0.92628 1.06238 1.20308 0.97500 0.92704 1.01212 1.17013 0.94502 0.77171 1.06402 1.91494 1.97309 1.29376 1.94022 1.20834 0.97637 0.93671 1.02248 1.19898 0.95369 0.93024 1.03556 1.18440 0.95540 0.84012 1.03615 1.43282 1.07827 1.06714 1.61549 0.72710 0.91689 0.90734 0.89107 0.88967 0.89210 0.77684 0.96007 0.95787 0.77761 0.93425 0.82280 0.84384 0.84248 0.84864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.35 8.90 59.84 0.53 0.89 16 2 N -0.60 -6.51 2.83 -183.00 -0.52 -7.03 16 3 C 0.08 1.00 5.19 -4.04 -0.02 0.98 16 4 C 0.09 1.36 3.27 -26.73 -0.09 1.27 16 5 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 6 O -0.55 -10.06 12.10 -43.80 -0.53 -10.59 16 7 C 0.13 2.46 5.90 -4.04 -0.02 2.43 16 8 N -0.73 -18.64 5.55 -59.91 -0.33 -18.98 16 9 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 10 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 11 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 12 N -0.93 -28.70 13.06 55.49 0.72 -27.97 16 13 Si 0.91 22.58 29.55 -169.99 -5.02 17.55 16 14 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 15 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 16 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 17 C 0.59 7.57 7.15 -12.69 -0.09 7.48 16 18 O -0.51 -8.08 15.23 -3.32 -0.05 -8.13 16 19 C 0.04 0.40 6.58 -82.30 -0.54 -0.14 16 20 C -0.11 -1.22 10.55 -39.15 -0.41 -1.63 16 21 C -0.09 -0.94 6.16 -106.93 -0.66 -1.60 16 22 C -0.10 -0.89 10.03 -39.46 -0.40 -1.29 16 23 C 0.07 0.62 7.24 -39.84 -0.29 0.33 16 24 F -0.14 -1.38 17.25 2.25 0.04 -1.34 16 25 C -0.12 -0.90 9.99 -39.46 -0.39 -1.29 16 26 C -0.10 -0.68 10.07 -39.43 -0.40 -1.08 16 27 C 0.09 0.85 7.25 -83.94 -0.61 0.24 16 28 N -0.58 -4.93 5.11 -7.34 -0.04 -4.97 16 29 H 0.43 2.54 4.83 -40.82 -0.20 2.34 16 30 H 0.06 0.41 7.67 -51.93 -0.40 0.01 16 31 H 0.07 0.38 5.21 -51.93 -0.27 0.11 16 32 H 0.09 0.45 7.82 -51.93 -0.41 0.04 16 33 H 0.09 1.15 7.42 -51.93 -0.39 0.77 16 34 H 0.09 0.83 7.85 -51.93 -0.41 0.43 16 35 H 0.38 6.47 8.45 45.56 0.38 6.86 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.39 10.79 7.67 -40.82 -0.31 10.47 16 39 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 40 H 0.16 1.62 8.06 -52.49 -0.42 1.20 16 41 H 0.14 1.05 8.06 -52.48 -0.42 0.63 16 42 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 43 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 LS Contribution 365.49 15.07 5.51 5.51 Total: -1.00 -35.33 365.49 -8.35 -43.69 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -4.50 Total: 13.21 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: -3.63 Total: -0.95 kcal Atomic # 7 Polarization: -58.78 SS G_CDS: -0.16 Total: -58.94 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -0.58 Total: -18.72 kcal Atomic # 9 Polarization: -1.38 SS G_CDS: 0.04 Total: -1.34 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.33 -8.35 -43.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734523658.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.186 kcal (2) G-P(sol) polarization free energy of solvation -35.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds