Wall clock time and date at job start Tue Mar 31 2020 18:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46500 * 120.00058 * 2 1 4 4 C 1.52998 * 109.47301 * 270.00194 * 3 2 1 5 5 H 1.09004 * 109.47434 * 59.99507 * 4 3 2 6 6 O 1.42900 * 109.47044 * 299.99801 * 4 3 2 7 7 C 1.52997 * 109.47589 * 179.97438 * 4 3 2 8 8 N 1.46499 * 109.47817 * 184.99880 * 7 4 3 9 9 C 1.36928 * 120.00503 * 179.72650 * 8 7 4 10 10 H 1.08006 * 119.99765 * 0.27910 * 9 8 7 11 11 C 1.38812 * 120.00254 * 180.27437 * 9 8 7 12 12 N 1.31620 * 119.99889 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 120.00112 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47055 * 60.00062 * 13 11 9 15 15 H 1.48497 * 109.46812 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.46875 * 299.99914 * 13 11 9 17 17 C 1.34777 * 120.00729 * 180.02562 * 2 1 3 18 18 O 1.21642 * 120.00427 * 180.15896 * 17 2 1 19 19 C 1.47056 * 119.99598 * 0.15824 * 17 2 1 20 20 C 1.35872 * 125.43069 * 190.05466 * 19 17 2 21 21 C 1.41593 * 107.74090 * 179.90495 * 20 19 17 22 22 C 1.40126 * 133.34898 * 180.10196 * 21 20 19 23 23 C 1.36614 * 119.81111 * 180.28056 * 22 21 20 24 24 F 1.35097 * 119.71587 * 180.02562 * 23 22 21 25 25 C 1.39127 * 120.56260 * 359.97438 * 23 22 21 26 26 C 1.37663 * 120.62758 * 359.97438 * 25 23 22 27 27 C 1.39214 * 119.83909 * 0.03311 * 26 25 23 28 28 N 1.37574 * 133.15069 * 179.97438 * 27 26 25 29 29 H 0.97005 * 125.61114 * 0.02562 * 28 27 26 30 30 H 1.09002 * 109.47262 * 96.26524 * 1 2 3 31 31 H 1.09002 * 109.46860 * 216.25726 * 1 2 3 32 32 H 1.08996 * 109.47652 * 336.25623 * 1 2 3 33 33 H 1.08996 * 109.47868 * 149.99663 * 3 2 1 34 34 H 1.09003 * 109.47146 * 29.99614 * 3 2 1 35 35 H 0.96697 * 114.00107 * 299.99409 * 6 4 3 36 36 H 1.09002 * 109.46542 * 64.99911 * 7 4 3 37 37 H 1.09000 * 109.47126 * 305.00299 * 7 4 3 38 38 H 0.97000 * 119.99234 * 359.97438 * 8 7 4 39 39 H 0.96998 * 119.99853 * 179.97438 * 12 11 9 40 40 H 1.08000 * 126.13194 * 0.02562 * 20 19 17 41 41 H 1.08003 * 120.09378 * 0.29481 * 22 21 20 42 42 H 1.07997 * 119.68475 * 180.02562 * 25 23 22 43 43 H 1.07997 * 120.07872 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7104 -1.4425 5 1 1.5000 1.8407 -1.9564 6 8 3.2248 0.7146 -2.1161 7 6 3.2169 3.0358 -1.4425 8 7 3.3568 3.5189 -2.8185 9 6 4.0057 4.6987 -3.0673 10 1 4.4183 5.2709 -2.2494 11 6 4.1333 5.1593 -4.3705 12 7 3.6301 4.4622 -5.3671 13 14 5.0192 6.7685 -4.7099 14 1 6.4192 6.6749 -4.2239 15 1 5.0185 7.0352 -6.1708 16 1 4.3233 7.8749 -4.0050 17 6 2.1390 -1.1671 -0.0005 18 8 3.3554 -1.1671 0.0024 19 6 1.4038 -2.4407 -0.0046 20 6 1.9536 -3.6682 0.1877 21 6 0.9121 -4.6244 0.1106 22 6 0.8771 -6.0202 0.2292 23 6 -0.3100 -6.6834 0.0974 24 9 -0.3417 -8.0290 0.2127 25 6 -1.4867 -5.9847 -0.1533 26 6 -1.4762 -4.6133 -0.2726 27 6 -0.2784 -3.9158 -0.1423 28 7 0.0447 -2.5802 -0.2089 29 1 -0.5791 -1.8556 -0.3727 30 1 -0.3634 -0.1122 -1.0215 31 1 -0.3633 -0.8287 0.6078 32 1 -0.3634 0.9406 0.4138 33 1 3.1498 1.1385 0.5138 34 1 1.6083 2.0284 0.5138 35 1 4.0873 0.5462 -1.7127 36 1 4.2052 2.8851 -1.0081 37 1 2.6692 3.7711 -0.8532 38 1 2.9866 3.0047 -3.5529 39 1 3.7189 4.7842 -6.2777 40 1 2.9976 -3.8771 0.3691 41 1 1.7859 -6.5701 0.4244 42 1 -2.4173 -6.5232 -0.2545 43 1 -2.3948 -4.0798 -0.4669 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734523658.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:37 Heat of formation + Delta-G solvation = -55.657989 kcal Electronic energy + Delta-G solvation = -27886.763010 eV Core-core repulsion = 23654.435460 eV Total energy + Delta-G solvation = -4232.327551 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.79346 -42.83409 -40.80132 -38.71910 -37.63984 -36.60492 -35.88059 -33.40013 -33.20583 -31.44107 -30.28720 -29.94837 -28.17077 -27.21270 -25.33600 -24.03986 -23.14812 -22.71787 -22.06001 -21.06656 -19.24510 -18.88093 -18.72448 -18.00685 -17.83380 -17.23763 -16.80156 -16.57404 -16.54127 -16.44620 -16.12140 -15.69349 -15.50215 -15.05587 -14.92654 -14.86628 -14.61907 -14.24043 -14.16821 -14.10348 -14.07212 -13.71799 -13.62159 -13.17155 -12.96290 -12.75033 -12.62495 -12.27346 -12.21566 -12.07760 -11.96078 -11.83252 -11.37714 -11.07794 -11.04526 -10.97001 -9.77880 -9.24977 -9.02469 -8.88511 -7.95754 -5.25674 -0.40908 0.35399 0.95487 1.45893 1.49801 1.55863 1.62915 1.96476 2.20617 2.54935 2.66091 3.19992 3.35476 3.41801 3.51696 3.58308 3.73945 3.93228 3.94447 4.02970 4.08546 4.20959 4.26963 4.30862 4.34664 4.47146 4.48877 4.59546 4.65754 4.71880 4.83241 4.91878 4.96153 5.15221 5.19336 5.22392 5.24771 5.43420 5.46541 5.51377 5.93456 6.16018 6.24899 6.32469 6.77804 6.94145 7.31322 8.07788 8.30025 9.27458 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.028453 B = 0.001956 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.835025 B =14310.658767 C =14389.646783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.601 5.601 3 C 0.095 3.905 4 C 0.094 3.906 5 H 0.092 0.908 6 O -0.568 6.568 7 C 0.123 3.877 8 N -0.742 5.742 9 C -0.248 4.248 10 H 0.079 0.921 11 C -0.079 4.079 12 N -0.970 5.970 13 Si 0.978 3.022 14 H -0.279 1.279 15 H -0.296 1.296 16 H -0.273 1.273 17 C 0.581 3.419 18 O -0.552 6.552 19 C 0.023 3.977 20 C -0.124 4.124 21 C -0.114 4.114 22 C -0.109 4.109 23 C 0.058 3.942 24 F -0.150 7.150 25 C -0.119 4.119 26 C -0.090 4.090 27 C 0.091 3.909 28 N -0.566 5.566 29 H 0.437 0.563 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.116 0.884 33 H 0.084 0.916 34 H 0.125 0.875 35 H 0.377 0.623 36 H 0.022 0.978 37 H 0.044 0.956 38 H 0.373 0.627 39 H 0.251 0.749 40 H 0.154 0.846 41 H 0.143 0.857 42 H 0.166 0.834 43 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.741 -19.228 17.122 30.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 N -0.332 5.332 3 C -0.028 4.028 4 C 0.034 3.966 5 H 0.110 0.890 6 O -0.374 6.374 7 C -0.004 4.004 8 N -0.384 5.384 9 C -0.380 4.380 10 H 0.096 0.904 11 C -0.271 4.271 12 N -0.621 5.621 13 Si 0.806 3.194 14 H -0.205 1.205 15 H -0.223 1.223 16 H -0.199 1.199 17 C 0.370 3.630 18 O -0.429 6.429 19 C -0.087 4.087 20 C -0.151 4.151 21 C -0.119 4.119 22 C -0.129 4.129 23 C 0.038 3.962 24 F -0.129 7.129 25 C -0.139 4.139 26 C -0.110 4.110 27 C -0.020 4.020 28 N -0.180 5.180 29 H 0.287 0.713 30 H 0.090 0.910 31 H 0.109 0.891 32 H 0.134 0.866 33 H 0.102 0.898 34 H 0.143 0.857 35 H 0.225 0.775 36 H 0.040 0.960 37 H 0.062 0.938 38 H 0.205 0.795 39 H 0.060 0.940 40 H 0.172 0.828 41 H 0.161 0.839 42 H 0.184 0.816 43 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -15.630 -18.907 16.782 29.722 hybrid contribution 0.951 0.739 -0.576 1.335 sum -14.679 -18.167 16.206 28.428 Atomic orbital electron populations 1.22596 0.77844 1.06388 1.03067 1.47616 1.08089 1.05155 1.72351 1.22213 0.99315 0.85114 0.96144 1.22452 0.94556 0.86393 0.93202 0.89007 1.86522 1.33579 1.59397 1.57951 1.21454 0.97591 0.94502 0.86867 1.42458 1.68081 1.24453 1.03426 1.19639 1.27540 0.98297 0.92525 0.90360 1.25656 1.03094 1.02775 0.95613 1.69844 1.52332 1.41154 0.98766 0.85155 0.78521 0.79470 0.76256 1.20495 1.22265 1.19926 1.17408 0.86533 0.82774 0.76327 1.90798 1.13993 1.86901 1.51252 1.19977 0.83778 0.94644 1.10332 1.20996 0.99699 0.89674 1.04698 1.18004 0.93409 0.93021 1.07452 1.20419 0.98194 0.92620 1.01639 1.17260 0.95180 0.77006 1.06752 1.91477 1.97365 1.29903 1.94116 1.21176 0.97948 0.93942 1.00862 1.20275 0.95798 0.92895 1.02049 1.18727 0.95956 0.84019 1.03288 1.43178 1.06928 1.07043 1.60897 0.71282 0.91016 0.89073 0.86585 0.89762 0.85684 0.77500 0.96013 0.93798 0.79494 0.94040 0.82823 0.83911 0.81604 0.81362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 8.90 127.77 1.14 1.58 16 2 N -0.60 -12.00 2.83 -851.11 -2.41 -14.41 16 3 C 0.10 2.09 5.19 86.38 0.45 2.54 16 4 C 0.09 2.93 3.27 30.59 0.10 3.03 16 5 H 0.09 2.92 8.14 -2.38 -0.02 2.90 16 6 O -0.57 -21.23 12.10 -140.79 -1.70 -22.93 16 7 C 0.12 4.68 5.90 86.38 0.51 5.19 16 8 N -0.74 -38.25 5.55 -343.46 -1.91 -40.16 16 9 C -0.25 -14.01 9.99 84.03 0.84 -13.17 16 10 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 11 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 12 N -0.97 -60.92 13.06 21.65 0.28 -60.63 16 13 Si 0.98 46.51 29.55 68.60 2.03 48.54 16 14 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 15 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 16 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 17 C 0.58 14.92 7.15 86.56 0.62 15.54 16 18 O -0.55 -18.09 15.23 4.03 0.06 -18.02 16 19 C 0.02 0.50 6.58 39.91 0.26 0.77 16 20 C -0.12 -2.79 10.55 22.55 0.24 -2.55 16 21 C -0.11 -2.28 6.16 -21.36 -0.13 -2.41 16 22 C -0.11 -1.98 10.03 22.35 0.22 -1.76 16 23 C 0.06 0.97 7.24 22.10 0.16 1.13 16 24 F -0.15 -2.77 17.25 44.97 0.78 -1.99 16 25 C -0.12 -1.41 9.99 22.35 0.22 -1.19 16 26 C -0.09 -0.97 10.07 22.37 0.23 -0.75 16 27 C 0.09 1.47 7.25 39.11 0.28 1.75 16 28 N -0.57 -8.60 5.11 -177.15 -0.91 -9.51 16 29 H 0.44 4.03 4.83 -92.70 -0.45 3.58 16 30 H 0.07 0.69 7.67 -2.39 -0.02 0.67 16 31 H 0.09 0.65 5.21 -2.39 -0.01 0.64 16 32 H 0.12 0.66 7.82 -2.39 -0.02 0.64 16 33 H 0.08 2.03 7.42 -2.39 -0.02 2.01 16 34 H 0.13 1.87 7.85 -2.39 -0.02 1.86 16 35 H 0.38 13.49 8.45 -74.06 -0.63 12.86 16 36 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.37 21.16 7.67 -92.71 -0.71 20.45 16 39 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 40 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 41 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 42 H 0.17 1.06 8.06 -2.91 -0.02 1.03 16 43 H 0.17 0.62 8.06 -2.91 -0.02 0.59 16 Total: -1.00 -78.11 365.49 1.14 -76.97 By element: Atomic # 1 Polarization: 37.31 SS G_CDS: -0.69 Total: 36.62 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: 5.61 Total: 5.53 kcal Atomic # 7 Polarization: -119.78 SS G_CDS: -4.94 Total: -124.71 kcal Atomic # 8 Polarization: -39.31 SS G_CDS: -1.64 Total: -40.96 kcal Atomic # 9 Polarization: -2.77 SS G_CDS: 0.78 Total: -1.99 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -78.11 1.14 -76.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734523658.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.313 kcal (2) G-P(sol) polarization free energy of solvation -78.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds