Wall clock time and date at job start Tue Mar 31 2020 18:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46885 * 2 1 4 4 C 1.53002 * 109.46927 * 119.99531 * 2 1 3 5 5 N 1.46497 * 109.46713 * 175.00154 * 4 2 1 6 6 C 1.36935 * 119.99549 * 180.02562 * 5 4 2 7 7 H 1.07998 * 120.00245 * 0.02562 * 6 5 4 8 8 C 1.38821 * 119.99917 * 179.97438 * 6 5 4 9 9 N 1.31620 * 119.99587 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 119.99945 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47144 * 90.00228 * 10 8 6 12 12 H 1.48504 * 109.46962 * 209.99625 * 10 8 6 13 13 H 1.48498 * 109.47283 * 329.99873 * 10 8 6 14 14 N 1.46496 * 109.46870 * 239.99875 * 2 1 3 15 15 C 1.46496 * 119.99962 * 299.99763 * 14 2 1 16 16 C 1.34778 * 119.99602 * 120.00563 * 14 2 1 17 17 O 1.21273 * 120.00363 * 359.97438 * 16 14 2 18 18 C 1.50700 * 119.99665 * 179.97438 * 16 14 2 19 19 C 1.50700 * 109.47236 * 179.97438 * 18 16 14 20 20 N 1.29746 * 126.28707 * 89.97081 * 19 18 16 21 21 O 1.41350 * 109.73600 * 180.02562 * 20 19 18 22 22 C 1.34894 * 109.33207 * 359.97438 * 21 20 19 23 23 C 1.38954 * 133.34221 * 180.02562 * 22 21 20 24 24 C 1.37760 * 119.97056 * 180.23276 * 23 22 21 25 25 C 1.38993 * 120.58100 * 359.52965 * 24 23 22 26 26 F 1.35102 * 119.84120 * 180.24355 * 25 24 23 27 27 C 1.37797 * 120.31847 * 0.45015 * 25 24 23 28 28 C 1.39713 * 119.65780 * 359.78970 * 27 25 24 29 29 H 1.08998 * 109.47302 * 300.00191 * 1 2 3 30 30 H 1.09004 * 109.47345 * 60.00451 * 1 2 3 31 31 H 1.09006 * 109.47188 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47253 * 295.00552 * 4 2 1 33 33 H 1.09004 * 109.46447 * 55.00271 * 4 2 1 34 34 H 0.96999 * 120.00149 * 359.97438 * 5 4 2 35 35 H 0.97000 * 119.99820 * 180.02562 * 9 8 6 36 36 H 1.09007 * 109.47469 * 270.00162 * 15 14 2 37 37 H 1.08999 * 109.47532 * 30.00355 * 15 14 2 38 38 H 1.09009 * 109.47102 * 150.00503 * 15 14 2 39 39 H 1.09003 * 109.47637 * 59.99544 * 18 16 14 40 40 H 1.09001 * 109.47230 * 299.99651 * 18 16 14 41 41 H 1.08002 * 120.01255 * 359.94992 * 23 22 21 42 42 H 1.07998 * 119.71090 * 179.74442 * 24 23 22 43 43 H 1.08008 * 120.16793 * 179.81455 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8262 1.1906 6 6 4.1837 -1.4386 2.2069 7 1 3.6466 -1.8445 3.0513 8 6 5.5672 -1.5387 2.1511 9 7 6.2217 -1.0445 1.1216 10 14 6.4997 -2.3747 3.5369 11 1 6.6314 -3.8240 3.2413 12 1 7.8505 -1.7700 3.6599 13 1 5.7589 -2.1947 4.8113 14 7 2.0183 -0.6906 -1.1961 15 6 1.6644 -2.0932 -1.4279 16 6 2.7932 -0.0356 -2.0832 17 8 3.0859 1.1255 -1.8915 18 6 3.2960 -0.7462 -3.3134 19 6 4.1327 0.2011 -4.1341 20 7 5.4130 0.3830 -4.0289 21 8 5.8364 1.3510 -4.9678 22 6 4.7726 1.7796 -5.6779 23 6 4.6209 2.7030 -6.7051 24 6 3.3738 2.9368 -7.2418 25 6 2.2614 2.2487 -6.7717 26 9 1.0462 2.4861 -7.3122 27 6 2.3913 1.3287 -5.7540 28 6 3.6498 1.0862 -5.1979 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.7516 -0.1583 2.1370 33 1 1.6053 -1.7197 1.2952 34 1 3.9823 -0.4627 0.4316 35 1 7.1883 -1.1148 1.0824 36 1 2.4157 -2.7378 -0.9715 37 1 0.6904 -2.3002 -0.9845 38 1 1.6238 -2.2853 -2.5001 39 1 2.4484 -1.0892 -3.9069 40 1 3.9017 -1.6024 -3.0164 41 1 5.4795 3.2407 -7.0794 42 1 3.2601 3.6584 -8.0371 43 1 1.5247 0.7976 -5.3886 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753716607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:26 Heat of formation + Delta-G solvation = 5.963884 kcal Electronic energy + Delta-G solvation = -28880.419876 eV Core-core repulsion = 24650.764451 eV Total energy + Delta-G solvation = -4229.655426 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.16268 -41.93886 -39.81772 -37.67789 -36.55623 -34.62448 -34.02726 -32.14152 -30.99116 -30.23020 -29.90527 -29.03034 -26.75051 -25.60616 -23.91123 -22.93225 -22.79737 -21.88985 -20.25282 -18.79254 -18.43968 -17.52654 -17.22225 -17.06620 -16.80306 -16.20687 -15.81084 -15.66870 -15.51405 -15.01981 -14.67818 -14.57213 -13.90952 -13.80192 -13.62465 -13.45319 -13.21170 -13.12196 -12.97221 -12.47475 -12.31285 -12.28477 -12.10512 -12.03039 -11.93709 -11.65396 -11.49209 -11.30824 -11.17235 -10.83072 -10.77531 -10.47535 -10.03976 -9.68358 -9.61916 -9.29146 -8.85845 -8.69082 -8.34927 -6.88904 -5.70557 -3.01063 0.29083 0.79279 1.82284 2.35044 2.81462 3.06089 3.26729 3.44878 3.49960 3.52703 3.68575 3.87622 4.10566 4.22566 4.54140 4.57617 4.64104 4.81182 4.96656 4.98552 5.15816 5.20995 5.27226 5.34372 5.42607 5.51902 5.54473 5.60204 5.61324 5.64958 5.66118 5.80827 5.91907 6.05485 6.07373 6.15696 6.30251 6.34083 6.44552 6.70168 6.91205 7.11566 7.58867 7.71948 8.37578 8.46107 9.57516 10.15535 10.50569 11.51003 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014096 B = 0.003251 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.831913 B = 8610.301093 C =10096.112197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.126 3.874 3 H 0.100 0.900 4 C 0.145 3.855 5 N -0.728 5.728 6 C -0.244 4.244 7 H 0.069 0.931 8 C -0.011 4.011 9 N -0.926 5.926 10 Si 0.905 3.095 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.283 1.283 14 N -0.593 5.593 15 C 0.075 3.925 16 C 0.525 3.475 17 O -0.529 6.529 18 C -0.075 4.075 19 C 0.152 3.848 20 N -0.247 5.247 21 O -0.085 6.085 22 C 0.076 3.924 23 C -0.094 4.094 24 C -0.098 4.098 25 C 0.067 3.933 26 F -0.135 7.135 27 C -0.072 4.072 28 C -0.154 4.154 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.027 0.973 33 H 0.021 0.979 34 H 0.386 0.614 35 H 0.255 0.745 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.121 0.879 40 H 0.128 0.872 41 H 0.150 0.850 42 H 0.151 0.849 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.554 2.471 -18.494 22.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.023 3.977 3 H 0.118 0.882 4 C 0.016 3.984 5 N -0.373 5.373 6 C -0.375 4.375 7 H 0.087 0.913 8 C -0.208 4.208 9 N -0.574 5.574 10 Si 0.736 3.264 11 H -0.218 1.218 12 H -0.218 1.218 13 H -0.208 1.208 14 N -0.326 5.326 15 C -0.068 4.068 16 C 0.310 3.690 17 O -0.405 6.405 18 C -0.116 4.116 19 C -0.030 4.030 20 N 0.012 4.988 21 O -0.096 6.096 22 C 0.022 3.978 23 C -0.114 4.114 24 C -0.118 4.118 25 C 0.048 3.952 26 F -0.114 7.114 27 C -0.093 4.093 28 C -0.158 4.158 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.045 0.955 33 H 0.038 0.962 34 H 0.220 0.780 35 H 0.065 0.935 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.139 0.861 40 H 0.146 0.854 41 H 0.168 0.832 42 H 0.169 0.831 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -11.175 2.734 -17.656 21.073 hybrid contribution -0.093 -0.274 0.240 0.376 sum -11.267 2.460 -17.415 20.888 Atomic orbital electron populations 1.22063 0.95059 1.02070 1.02162 1.21427 0.93258 0.98552 0.84480 0.88162 1.20993 0.87199 0.96723 0.93492 1.42297 0.99634 1.70169 1.25193 1.19178 0.89416 1.29686 0.99267 0.91328 1.24764 0.96462 1.01559 0.97998 1.69686 1.07250 1.50324 1.30093 0.86226 0.79526 0.78959 0.81651 1.21795 1.21782 1.20844 1.47587 1.50378 1.12309 1.22352 1.21821 1.01945 0.82108 1.00969 1.19850 0.78428 0.86875 0.83837 1.90754 1.56566 1.16872 1.76289 1.20316 0.99474 0.97381 0.94398 1.23758 0.92044 0.94414 0.92794 1.80136 1.12341 1.02493 1.03811 1.89246 1.28126 1.49527 1.42690 1.20305 0.87467 0.95798 0.94232 1.19828 0.98287 0.97953 0.95343 1.21040 0.90496 0.99639 1.00591 1.17243 0.80980 1.00013 0.96985 1.91521 1.41472 1.93596 1.84821 1.20524 0.96802 0.97323 0.94675 1.20372 0.94755 1.01082 0.99563 0.91306 0.92616 0.92272 0.95484 0.96164 0.77984 0.93464 0.91263 0.90855 0.91683 0.86143 0.85390 0.83246 0.83095 0.83715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 9.17 37.16 0.34 -1.51 16 2 C 0.13 2.07 2.80 -67.93 -0.19 1.88 16 3 H 0.10 1.93 6.90 -51.93 -0.36 1.57 16 4 C 0.14 2.86 5.56 -4.04 -0.02 2.84 16 5 N -0.73 -18.75 5.43 -59.91 -0.33 -19.07 16 6 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 7 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 8 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 9 N -0.93 -28.95 13.06 55.49 0.72 -28.22 16 10 Si 0.91 22.79 29.55 -169.99 -5.02 17.77 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16 13 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 14 N -0.59 -9.08 2.24 -173.93 -0.39 -9.47 16 15 C 0.07 0.86 9.40 59.84 0.56 1.42 16 16 C 0.52 8.89 7.37 -10.98 -0.08 8.81 16 17 O -0.53 -11.29 15.36 5.56 0.09 -11.21 16 18 C -0.08 -0.98 4.85 -29.04 -0.14 -1.12 16 19 C 0.15 2.36 5.95 -80.12 -0.48 1.88 16 20 N -0.25 -4.54 12.81 34.91 0.45 -4.09 16 21 O -0.09 -1.43 12.07 7.48 0.09 -1.34 16 22 C 0.08 1.04 7.48 -38.49 -0.29 0.75 16 23 C -0.09 -0.92 10.06 -39.49 -0.40 -1.31 16 24 C -0.10 -0.82 9.99 -39.48 -0.39 -1.22 16 25 C 0.07 0.67 7.29 -39.46 -0.29 0.38 16 26 F -0.14 -1.36 17.26 2.25 0.04 -1.32 16 27 C -0.07 -0.78 10.07 -39.19 -0.39 -1.18 16 28 C -0.15 -2.08 6.32 -105.17 -0.66 -2.74 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.62 6.66 -51.93 -0.35 0.27 16 32 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.02 0.39 7.84 -51.93 -0.41 -0.02 16 34 H 0.39 10.84 7.06 -40.82 -0.29 10.55 16 35 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.07 0.71 6.43 -51.93 -0.33 0.38 16 38 H 0.06 0.52 6.44 -51.92 -0.33 0.18 16 39 H 0.12 0.99 7.40 -51.93 -0.38 0.60 16 40 H 0.13 1.64 8.11 -51.93 -0.42 1.22 16 41 H 0.15 1.04 8.06 -52.49 -0.42 0.61 16 42 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 43 H 0.15 1.25 8.06 -52.48 -0.42 0.83 16 LS Contribution 370.64 15.07 5.59 5.59 Total: -1.00 -36.85 370.64 -6.83 -43.68 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -5.38 Total: 6.30 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: -2.68 Total: 1.40 kcal Atomic # 7 Polarization: -61.31 SS G_CDS: 0.46 Total: -60.86 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: 0.18 Total: -12.55 kcal Atomic # 9 Polarization: -1.36 SS G_CDS: 0.04 Total: -1.32 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.85 -6.83 -43.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753716607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.643 kcal (2) G-P(sol) polarization free energy of solvation -36.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds