Wall clock time and date at job start Tue Mar 31 2020 18:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46885 * 2 1 4 4 C 1.53002 * 109.46927 * 119.99531 * 2 1 3 5 5 N 1.46497 * 109.46713 * 175.00154 * 4 2 1 6 6 C 1.36935 * 119.99549 * 180.02562 * 5 4 2 7 7 H 1.07998 * 120.00245 * 0.02562 * 6 5 4 8 8 C 1.38821 * 119.99917 * 179.97438 * 6 5 4 9 9 N 1.31620 * 119.99587 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 119.99945 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47144 * 90.00228 * 10 8 6 12 12 H 1.48504 * 109.46962 * 209.99625 * 10 8 6 13 13 H 1.48498 * 109.47283 * 329.99873 * 10 8 6 14 14 N 1.46496 * 109.46870 * 239.99875 * 2 1 3 15 15 C 1.46496 * 119.99962 * 299.99763 * 14 2 1 16 16 C 1.34778 * 119.99602 * 120.00563 * 14 2 1 17 17 O 1.21273 * 120.00363 * 359.97438 * 16 14 2 18 18 C 1.50700 * 119.99665 * 179.97438 * 16 14 2 19 19 C 1.50700 * 109.47236 * 179.97438 * 18 16 14 20 20 N 1.29746 * 126.28707 * 89.97081 * 19 18 16 21 21 O 1.41350 * 109.73600 * 180.02562 * 20 19 18 22 22 C 1.34894 * 109.33207 * 359.97438 * 21 20 19 23 23 C 1.38954 * 133.34221 * 180.02562 * 22 21 20 24 24 C 1.37760 * 119.97056 * 180.23276 * 23 22 21 25 25 C 1.38993 * 120.58100 * 359.52965 * 24 23 22 26 26 F 1.35102 * 119.84120 * 180.24355 * 25 24 23 27 27 C 1.37797 * 120.31847 * 0.45015 * 25 24 23 28 28 C 1.39713 * 119.65780 * 359.78970 * 27 25 24 29 29 H 1.08998 * 109.47302 * 300.00191 * 1 2 3 30 30 H 1.09004 * 109.47345 * 60.00451 * 1 2 3 31 31 H 1.09006 * 109.47188 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47253 * 295.00552 * 4 2 1 33 33 H 1.09004 * 109.46447 * 55.00271 * 4 2 1 34 34 H 0.96999 * 120.00149 * 359.97438 * 5 4 2 35 35 H 0.97000 * 119.99820 * 180.02562 * 9 8 6 36 36 H 1.09007 * 109.47469 * 270.00162 * 15 14 2 37 37 H 1.08999 * 109.47532 * 30.00355 * 15 14 2 38 38 H 1.09009 * 109.47102 * 150.00503 * 15 14 2 39 39 H 1.09003 * 109.47637 * 59.99544 * 18 16 14 40 40 H 1.09001 * 109.47230 * 299.99651 * 18 16 14 41 41 H 1.08002 * 120.01255 * 359.94992 * 23 22 21 42 42 H 1.07998 * 119.71090 * 179.74442 * 24 23 22 43 43 H 1.08008 * 120.16793 * 179.81455 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8262 1.1906 6 6 4.1837 -1.4386 2.2069 7 1 3.6466 -1.8445 3.0513 8 6 5.5672 -1.5387 2.1511 9 7 6.2217 -1.0445 1.1216 10 14 6.4997 -2.3747 3.5369 11 1 6.6314 -3.8240 3.2413 12 1 7.8505 -1.7700 3.6599 13 1 5.7589 -2.1947 4.8113 14 7 2.0183 -0.6906 -1.1961 15 6 1.6644 -2.0932 -1.4279 16 6 2.7932 -0.0356 -2.0832 17 8 3.0859 1.1255 -1.8915 18 6 3.2960 -0.7462 -3.3134 19 6 4.1327 0.2011 -4.1341 20 7 5.4130 0.3830 -4.0289 21 8 5.8364 1.3510 -4.9678 22 6 4.7726 1.7796 -5.6779 23 6 4.6209 2.7030 -6.7051 24 6 3.3738 2.9368 -7.2418 25 6 2.2614 2.2487 -6.7717 26 9 1.0462 2.4861 -7.3122 27 6 2.3913 1.3287 -5.7540 28 6 3.6498 1.0862 -5.1979 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.7516 -0.1583 2.1370 33 1 1.6053 -1.7197 1.2952 34 1 3.9823 -0.4627 0.4316 35 1 7.1883 -1.1148 1.0824 36 1 2.4157 -2.7378 -0.9715 37 1 0.6904 -2.3002 -0.9845 38 1 1.6238 -2.2853 -2.5001 39 1 2.4484 -1.0892 -3.9069 40 1 3.9017 -1.6024 -3.0164 41 1 5.4795 3.2407 -7.0794 42 1 3.2601 3.6584 -8.0371 43 1 1.5247 0.7976 -5.3886 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753716607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:25 Heat of formation + Delta-G solvation = -19.277804 kcal Electronic energy + Delta-G solvation = -28881.514438 eV Core-core repulsion = 24650.764451 eV Total energy + Delta-G solvation = -4230.749987 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.94874 -42.97306 -41.10304 -38.56227 -37.97770 -35.87498 -35.74623 -33.69157 -32.08858 -31.77547 -30.86099 -30.12265 -27.80162 -27.35441 -24.81541 -24.53536 -23.83921 -23.27740 -21.43840 -20.06466 -19.35144 -19.11166 -18.57072 -18.35673 -17.65003 -17.30898 -17.01469 -16.82613 -16.59078 -16.43241 -16.04431 -15.44062 -15.40833 -15.24669 -14.94707 -14.61848 -14.31457 -14.29289 -13.98858 -13.83145 -13.72346 -13.40214 -13.24284 -12.99388 -12.98421 -12.97582 -12.77922 -12.63372 -12.51171 -12.35380 -12.18931 -12.14675 -11.80152 -11.72015 -11.02751 -10.87628 -10.19885 -9.61035 -9.57792 -9.01397 -7.94277 -5.24915 -0.60126 -0.07114 0.78026 1.32955 1.43584 1.46314 1.53887 1.54906 2.03902 2.30347 2.54181 2.72305 2.96064 3.21272 3.38481 3.39265 3.47435 3.82135 3.87774 3.92878 4.08588 4.10556 4.13580 4.28675 4.33145 4.36219 4.46508 4.52088 4.71786 4.76195 4.81048 4.84049 4.87566 4.88050 4.93930 4.96116 5.08266 5.16891 5.33784 5.46598 5.51731 5.63554 6.06516 6.24176 6.38226 7.11618 7.31027 8.08396 8.30474 9.28100 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014096 B = 0.003251 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.831913 B = 8610.301093 C =10096.112197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.129 3.871 3 H 0.063 0.937 4 C 0.142 3.858 5 N -0.743 5.743 6 C -0.243 4.243 7 H 0.079 0.921 8 C -0.078 4.078 9 N -0.969 5.969 10 Si 0.975 3.025 11 H -0.283 1.283 12 H -0.301 1.301 13 H -0.268 1.268 14 N -0.591 5.591 15 C 0.068 3.932 16 C 0.516 3.484 17 O -0.585 6.585 18 C -0.069 4.069 19 C 0.153 3.847 20 N -0.310 5.310 21 O -0.109 6.109 22 C 0.047 3.953 23 C -0.092 4.092 24 C -0.078 4.078 25 C 0.068 3.932 26 F -0.132 7.132 27 C -0.073 4.073 28 C -0.172 4.172 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.027 0.973 33 H 0.041 0.959 34 H 0.370 0.630 35 H 0.247 0.753 36 H 0.042 0.958 37 H 0.099 0.901 38 H 0.107 0.893 39 H 0.176 0.824 40 H 0.127 0.873 41 H 0.177 0.823 42 H 0.191 0.809 43 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.603 1.792 -19.745 25.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.025 3.975 3 H 0.081 0.919 4 C 0.014 3.986 5 N -0.386 5.386 6 C -0.375 4.375 7 H 0.097 0.903 8 C -0.270 4.270 9 N -0.619 5.619 10 Si 0.804 3.196 11 H -0.210 1.210 12 H -0.228 1.228 13 H -0.192 1.192 14 N -0.322 5.322 15 C -0.073 4.073 16 C 0.303 3.697 17 O -0.465 6.465 18 C -0.109 4.109 19 C -0.028 4.028 20 N -0.053 5.053 21 O -0.120 6.120 22 C -0.007 4.007 23 C -0.111 4.111 24 C -0.098 4.098 25 C 0.048 3.952 26 F -0.111 7.111 27 C -0.094 4.094 28 C -0.175 4.175 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.044 0.956 33 H 0.058 0.942 34 H 0.201 0.799 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.117 0.883 38 H 0.125 0.875 39 H 0.194 0.806 40 H 0.145 0.855 41 H 0.194 0.806 42 H 0.209 0.791 43 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -14.309 2.010 -18.889 23.782 hybrid contribution 0.704 0.010 0.579 0.911 sum -13.605 2.021 -18.310 22.901 Atomic orbital electron populations 1.21968 0.90785 1.03947 1.03224 1.21290 0.96309 0.96170 0.83683 0.91890 1.21227 0.83997 0.98005 0.95327 1.42538 1.02124 1.69798 1.24108 1.19639 0.89878 1.28289 0.99690 0.90273 1.25625 0.97629 1.03154 1.00574 1.69890 1.06820 1.52716 1.32503 0.85124 0.77478 0.77881 0.79162 1.20973 1.22847 1.19245 1.47723 1.49564 1.13665 1.21297 1.22107 1.02185 0.79104 1.03952 1.20487 0.77820 0.86457 0.84931 1.90724 1.58566 1.19487 1.77741 1.20475 1.00916 0.96217 0.93328 1.24199 0.91563 0.94234 0.92819 1.80035 1.14494 1.04764 1.06010 1.89147 1.29636 1.49865 1.43313 1.20945 0.86904 0.97346 0.95485 1.20257 0.99967 0.96900 0.94016 1.21486 0.89115 0.98908 1.00250 1.17389 0.81466 0.99703 0.96594 1.91538 1.41385 1.93500 1.84661 1.20735 0.96347 0.97663 0.94656 1.20425 0.95858 1.01495 0.99764 0.90456 0.91428 0.89873 0.95561 0.94150 0.79855 0.94380 0.93919 0.88253 0.87466 0.80624 0.85455 0.80552 0.79147 0.81524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 9.17 71.98 0.66 -2.31 16 2 C 0.13 4.19 2.80 44.99 0.13 4.32 16 3 H 0.06 2.53 6.90 -2.39 -0.02 2.51 16 4 C 0.14 5.53 5.56 86.38 0.48 6.01 16 5 N -0.74 -39.07 5.43 -343.45 -1.87 -40.93 16 6 C -0.24 -13.88 9.99 84.04 0.84 -13.04 16 7 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 8 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 9 N -0.97 -63.02 13.06 21.65 0.28 -62.74 16 10 Si 0.97 47.67 29.55 68.60 2.03 49.70 16 11 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 12 H -0.30 -15.12 7.11 99.48 0.71 -14.41 16 13 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 14 N -0.59 -17.63 2.24 -822.59 -1.85 -19.48 16 15 C 0.07 1.40 9.40 127.77 1.20 2.60 16 16 C 0.52 17.77 7.37 87.66 0.65 18.42 16 17 O -0.58 -26.38 15.36 -3.01 -0.05 -26.42 16 18 C -0.07 -1.80 4.85 29.10 0.14 -1.66 16 19 C 0.15 4.94 5.95 45.04 0.27 5.21 16 20 N -0.31 -12.36 12.81 -43.47 -0.56 -12.91 16 21 O -0.11 -3.94 12.07 29.13 0.35 -3.59 16 22 C 0.05 1.31 7.48 22.97 0.17 1.48 16 23 C -0.09 -1.65 10.06 22.33 0.22 -1.42 16 24 C -0.08 -1.07 9.99 22.34 0.22 -0.85 16 25 C 0.07 1.17 7.29 22.35 0.16 1.33 16 26 F -0.13 -2.23 17.26 44.97 0.78 -1.46 16 27 C -0.07 -1.46 10.07 22.52 0.23 -1.23 16 28 C -0.17 -4.65 6.32 -20.22 -0.13 -4.78 16 29 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.08 1.37 6.66 -2.38 -0.02 1.35 16 32 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.04 1.44 7.84 -2.38 -0.02 1.43 16 34 H 0.37 21.71 7.06 -92.71 -0.65 21.06 16 35 H 0.25 15.78 8.31 -92.71 -0.77 15.01 16 36 H 0.04 1.13 8.14 -2.38 -0.02 1.11 16 37 H 0.10 1.53 6.43 -2.39 -0.02 1.51 16 38 H 0.11 1.28 6.44 -2.38 -0.02 1.26 16 39 H 0.18 2.35 7.40 -2.39 -0.02 2.33 16 40 H 0.13 3.32 8.11 -2.39 -0.02 3.30 16 41 H 0.18 2.09 8.06 -2.91 -0.02 2.06 16 42 H 0.19 1.11 8.06 -2.91 -0.02 1.08 16 43 H 0.17 2.42 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -87.34 370.64 5.24 -82.10 By element: Atomic # 1 Polarization: 25.42 SS G_CDS: 0.41 Total: 25.83 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: 5.71 Total: 9.91 kcal Atomic # 7 Polarization: -132.08 SS G_CDS: -3.99 Total: -136.06 kcal Atomic # 8 Polarization: -30.32 SS G_CDS: 0.31 Total: -30.02 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 0.78 Total: -1.46 kcal Atomic # 14 Polarization: 47.67 SS G_CDS: 2.03 Total: 49.70 kcal Total: -87.34 5.24 -82.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753716607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.824 kcal (2) G-P(sol) polarization free energy of solvation -87.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds