Wall clock time and date at job start Tue Mar 31 2020 18:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47485 * 2 1 4 4 C 1.53003 * 109.47296 * 239.99860 * 2 1 3 5 5 N 1.46492 * 109.47314 * 184.99826 * 4 2 1 6 6 C 1.36934 * 120.00183 * 179.97438 * 5 4 2 7 7 H 1.08008 * 120.00069 * 0.02562 * 6 5 4 8 8 C 1.38817 * 120.00310 * 180.02562 * 6 5 4 9 9 N 1.31616 * 119.99797 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00002 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46838 * 60.00208 * 10 8 6 12 12 H 1.48503 * 109.47005 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47363 * 300.00283 * 10 8 6 14 14 N 1.46495 * 109.46977 * 119.99931 * 2 1 3 15 15 C 1.46506 * 119.99724 * 60.00300 * 14 2 1 16 16 C 1.34772 * 120.00192 * 239.99546 * 14 2 1 17 17 O 1.21281 * 119.99964 * 0.02562 * 16 14 2 18 18 C 1.50702 * 120.00043 * 179.97438 * 16 14 2 19 19 C 1.50706 * 109.46975 * 180.02562 * 18 16 14 20 20 N 1.29744 * 126.28910 * 90.02936 * 19 18 16 21 21 O 1.41340 * 109.73859 * 179.97438 * 20 19 18 22 22 C 1.34888 * 109.33389 * 359.97438 * 21 20 19 23 23 C 1.38954 * 133.34455 * 180.02562 * 22 21 20 24 24 C 1.37759 * 119.97260 * 179.97438 * 23 22 21 25 25 C 1.38995 * 120.58610 * 359.97438 * 24 23 22 26 26 F 1.35093 * 119.84534 * 180.02562 * 25 24 23 27 27 C 1.37801 * 120.31493 * 359.97438 * 25 24 23 28 28 C 1.39723 * 119.65450 * 359.76449 * 27 25 24 29 29 H 1.08998 * 109.47392 * 300.00469 * 1 2 3 30 30 H 1.09012 * 109.47127 * 60.00208 * 1 2 3 31 31 H 1.08998 * 109.47026 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47289 * 305.00487 * 4 2 1 33 33 H 1.09003 * 109.47138 * 64.99775 * 4 2 1 34 34 H 0.96997 * 120.00028 * 0.02562 * 5 4 2 35 35 H 0.96996 * 120.00125 * 180.02562 * 9 8 6 36 36 H 1.09001 * 109.47111 * 269.99464 * 15 14 2 37 37 H 1.08992 * 109.47230 * 29.99758 * 15 14 2 38 38 H 1.09004 * 109.46696 * 150.00271 * 15 14 2 39 39 H 1.08994 * 109.46872 * 60.00875 * 18 16 14 40 40 H 1.08997 * 109.47234 * 300.00427 * 18 16 14 41 41 H 1.07999 * 120.01188 * 0.02562 * 23 22 21 42 42 H 1.08000 * 119.70808 * 180.02562 * 24 23 22 43 43 H 1.07997 * 120.17282 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5000 -0.8264 -1.1906 6 6 4.1838 -1.4388 -2.2067 7 1 3.6467 -1.8441 -3.0516 8 6 5.5672 -1.5389 -2.1509 9 7 6.2217 -1.0455 -1.1210 10 14 6.4998 -2.3750 -3.5367 11 1 6.2432 -1.6559 -4.8104 12 1 7.9546 -2.3508 -3.2395 13 1 6.0431 -3.7825 -3.6622 14 7 2.0183 -0.6906 1.1961 15 6 1.6643 -2.0932 1.4279 16 6 2.7932 -0.0357 2.0833 17 8 3.0859 1.1256 1.8916 18 6 3.2950 -0.7459 3.3140 19 6 4.1319 0.2014 4.1346 20 7 3.7043 0.9857 5.0755 21 8 4.7856 1.7209 5.6123 22 6 5.9224 1.3728 4.9750 23 6 7.2467 1.7749 5.0989 24 6 8.2121 1.2243 4.2849 25 6 7.8750 0.2658 3.3365 26 9 8.8339 -0.2645 2.5464 27 6 6.5674 -0.1468 3.1989 28 6 5.5797 0.3999 4.0222 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6054 -1.7198 -1.2952 33 1 1.7517 -0.1584 -2.1370 34 1 3.9823 -0.4628 -0.4316 35 1 7.1883 -1.1151 -1.0822 36 1 0.7375 -2.1444 1.9993 37 1 1.5295 -2.5968 0.4708 38 1 2.4628 -2.5819 1.9863 39 1 3.9004 -1.6025 3.0177 40 1 2.4470 -1.0881 3.9072 41 1 7.5191 2.5181 5.8337 42 1 9.2402 1.5397 4.3852 43 1 6.3082 -0.8920 2.4615 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753716608.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:28 Heat of formation + Delta-G solvation = 4.505023 kcal Electronic energy + Delta-G solvation = -29397.010808 eV Core-core repulsion = 25167.292121 eV Total energy + Delta-G solvation = -4229.718687 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.70398 -41.80771 -39.81441 -37.44511 -36.56159 -34.56081 -34.04919 -32.13872 -30.75415 -30.23576 -29.70873 -28.97794 -26.72134 -25.65177 -23.68731 -22.80643 -22.69272 -21.86278 -20.16739 -18.77493 -18.17678 -17.39660 -17.15324 -17.09865 -16.49544 -16.06721 -15.67916 -15.61230 -15.23175 -14.86026 -14.68047 -14.30891 -13.78945 -13.69479 -13.53796 -13.40659 -13.15847 -13.10336 -12.77199 -12.43083 -12.31730 -12.19271 -12.12852 -11.90325 -11.83544 -11.57151 -11.48304 -11.15251 -11.07362 -10.85862 -10.78993 -10.50444 -10.10030 -9.72065 -9.59580 -9.08821 -8.89042 -8.41427 -8.36978 -6.93009 -5.76158 -3.05282 0.47821 1.07496 1.89563 2.42440 2.82219 3.16841 3.41671 3.42512 3.47647 3.48859 3.86812 4.05078 4.33901 4.45727 4.55922 4.63666 4.85496 4.98153 5.12282 5.14733 5.21172 5.29125 5.36238 5.37831 5.52136 5.57758 5.59444 5.63553 5.73896 5.84723 5.86748 5.97402 6.00223 6.05946 6.08115 6.15354 6.32507 6.45884 6.60544 6.67088 6.89870 7.16260 7.58647 7.67825 8.37247 8.41685 9.53428 10.10571 10.46391 11.45827 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.008736 B = 0.005040 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3204.374491 B = 5554.270350 C = 8273.282405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.126 3.874 3 H 0.100 0.900 4 C 0.144 3.856 5 N -0.727 5.727 6 C -0.243 4.243 7 H 0.068 0.932 8 C -0.009 4.009 9 N -0.928 5.928 10 Si 0.904 3.096 11 H -0.287 1.287 12 H -0.291 1.291 13 H -0.287 1.287 14 N -0.593 5.593 15 C 0.077 3.923 16 C 0.525 3.475 17 O -0.528 6.528 18 C -0.076 4.076 19 C 0.164 3.836 20 N -0.277 5.277 21 O -0.090 6.090 22 C 0.072 3.928 23 C -0.103 4.103 24 C -0.095 4.095 25 C 0.076 3.924 26 F -0.129 7.129 27 C -0.057 4.057 28 C -0.158 4.158 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.021 0.979 33 H 0.028 0.972 34 H 0.385 0.615 35 H 0.256 0.744 36 H 0.052 0.948 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.128 0.872 40 H 0.120 0.880 41 H 0.147 0.853 42 H 0.151 0.849 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.348 -0.624 13.262 13.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.023 3.977 3 H 0.118 0.882 4 C 0.015 3.985 5 N -0.372 5.372 6 C -0.374 4.374 7 H 0.086 0.914 8 C -0.206 4.206 9 N -0.576 5.576 10 Si 0.736 3.264 11 H -0.214 1.214 12 H -0.217 1.217 13 H -0.214 1.214 14 N -0.326 5.326 15 C -0.066 4.066 16 C 0.310 3.690 17 O -0.404 6.404 18 C -0.116 4.116 19 C -0.017 4.017 20 N -0.020 5.020 21 O -0.101 6.101 22 C 0.018 3.982 23 C -0.122 4.122 24 C -0.115 4.115 25 C 0.056 3.944 26 F -0.107 7.107 27 C -0.078 4.078 28 C -0.161 4.161 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.039 0.961 33 H 0.046 0.954 34 H 0.220 0.780 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.146 0.854 40 H 0.138 0.862 41 H 0.164 0.836 42 H 0.168 0.832 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -5.126 0.396 13.758 14.687 hybrid contribution 1.503 -0.814 -1.285 2.138 sum -3.623 -0.418 12.473 12.995 Atomic orbital electron populations 1.22050 0.95006 1.02108 1.02125 1.21424 0.93354 0.98544 0.84385 0.88173 1.21004 0.87164 0.96754 0.93573 1.42273 0.99626 1.70161 1.25149 1.19143 0.89436 1.29598 0.99223 0.91411 1.24708 0.96366 1.01529 0.97992 1.69637 1.07257 1.50557 1.30119 0.86320 0.79108 0.79192 0.81824 1.21367 1.21678 1.21380 1.47593 1.50369 1.12296 1.22350 1.21784 0.99950 0.81746 1.03107 1.19862 0.78520 0.86905 0.83681 1.90760 1.56707 1.16788 1.76176 1.20328 1.00159 0.96956 0.94191 1.23710 0.91653 0.93716 0.92670 1.79811 1.03481 1.06550 1.12126 1.89136 1.12350 1.55958 1.52642 1.20210 0.89792 0.94861 0.93295 1.19716 0.87102 1.02934 1.02474 1.21075 1.00682 0.95510 0.94259 1.17284 0.85848 0.97681 0.93558 1.91561 1.61945 1.84921 1.72284 1.20816 0.90016 0.99620 0.97329 1.20311 0.92369 1.02137 1.01331 0.92629 0.91369 0.92323 0.96089 0.95388 0.78047 0.93450 0.92967 0.89982 0.91200 0.85383 0.86211 0.83556 0.83180 0.82559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.19 37.16 0.34 -1.55 16 2 C 0.13 2.06 2.80 -67.93 -0.19 1.87 16 3 H 0.10 1.92 6.90 -51.93 -0.36 1.57 16 4 C 0.14 2.77 5.50 -4.04 -0.02 2.75 16 5 N -0.73 -18.01 5.43 -59.91 -0.33 -18.33 16 6 C -0.24 -6.64 9.99 -15.06 -0.15 -6.79 16 7 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 8 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 9 N -0.93 -27.30 13.06 55.49 0.72 -26.57 16 10 Si 0.90 22.14 29.55 -169.99 -5.02 17.12 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 13 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 14 N -0.59 -9.06 2.24 -173.93 -0.39 -9.45 16 15 C 0.08 0.89 9.30 59.85 0.56 1.45 16 16 C 0.52 8.90 7.37 -10.99 -0.08 8.82 16 17 O -0.53 -11.30 15.36 5.56 0.09 -11.21 16 18 C -0.08 -0.99 4.86 -29.03 -0.14 -1.13 16 19 C 0.16 2.57 5.96 -80.11 -0.48 2.09 16 20 N -0.28 -4.59 12.81 34.91 0.45 -4.15 16 21 O -0.09 -1.47 12.07 7.50 0.09 -1.38 16 22 C 0.07 1.08 7.48 -38.49 -0.29 0.80 16 23 C -0.10 -1.21 10.06 -39.49 -0.40 -1.61 16 24 C -0.10 -1.12 9.99 -39.48 -0.39 -1.51 16 25 C 0.08 1.13 7.29 -39.46 -0.29 0.85 16 26 F -0.13 -2.11 17.26 2.25 0.04 -2.07 16 27 C -0.06 -0.92 10.08 -39.19 -0.39 -1.31 16 28 C -0.16 -2.52 6.32 -105.16 -0.66 -3.19 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 31 H 0.06 0.63 7.67 -51.93 -0.40 0.23 16 32 H 0.02 0.39 6.88 -51.93 -0.36 0.03 16 33 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.39 10.30 7.06 -40.82 -0.29 10.01 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.08 1.02 6.53 -51.93 -0.34 0.68 16 38 H 0.07 0.71 6.44 -51.93 -0.33 0.37 16 39 H 0.13 1.45 7.40 -51.93 -0.38 1.07 16 40 H 0.12 1.16 8.11 -51.93 -0.42 0.74 16 41 H 0.15 1.24 8.06 -52.49 -0.42 0.82 16 42 H 0.15 1.28 8.06 -52.49 -0.42 0.85 16 43 H 0.16 2.65 8.06 -52.49 -0.42 2.23 16 LS Contribution 370.66 15.07 5.59 5.59 Total: -1.00 -34.53 370.66 -6.84 -41.37 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -5.39 Total: 7.91 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: -2.69 Total: 1.17 kcal Atomic # 7 Polarization: -58.95 SS G_CDS: 0.46 Total: -58.50 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: 0.18 Total: -12.59 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.04 Total: -2.07 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.53 -6.84 -41.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753716608.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.879 kcal (2) G-P(sol) polarization free energy of solvation -34.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds