Wall clock time and date at job start Tue Mar 31 2020 18:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47485 * 2 1 4 4 C 1.53003 * 109.47296 * 239.99860 * 2 1 3 5 5 N 1.46492 * 109.47314 * 184.99826 * 4 2 1 6 6 C 1.36934 * 120.00183 * 179.97438 * 5 4 2 7 7 H 1.08008 * 120.00069 * 0.02562 * 6 5 4 8 8 C 1.38817 * 120.00310 * 180.02562 * 6 5 4 9 9 N 1.31616 * 119.99797 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00002 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46838 * 60.00208 * 10 8 6 12 12 H 1.48503 * 109.47005 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47363 * 300.00283 * 10 8 6 14 14 N 1.46495 * 109.46977 * 119.99931 * 2 1 3 15 15 C 1.46506 * 119.99724 * 60.00300 * 14 2 1 16 16 C 1.34772 * 120.00192 * 239.99546 * 14 2 1 17 17 O 1.21281 * 119.99964 * 0.02562 * 16 14 2 18 18 C 1.50702 * 120.00043 * 179.97438 * 16 14 2 19 19 C 1.50706 * 109.46975 * 180.02562 * 18 16 14 20 20 N 1.29744 * 126.28910 * 90.02936 * 19 18 16 21 21 O 1.41340 * 109.73859 * 179.97438 * 20 19 18 22 22 C 1.34888 * 109.33389 * 359.97438 * 21 20 19 23 23 C 1.38954 * 133.34455 * 180.02562 * 22 21 20 24 24 C 1.37759 * 119.97260 * 179.97438 * 23 22 21 25 25 C 1.38995 * 120.58610 * 359.97438 * 24 23 22 26 26 F 1.35093 * 119.84534 * 180.02562 * 25 24 23 27 27 C 1.37801 * 120.31493 * 359.97438 * 25 24 23 28 28 C 1.39723 * 119.65450 * 359.76449 * 27 25 24 29 29 H 1.08998 * 109.47392 * 300.00469 * 1 2 3 30 30 H 1.09012 * 109.47127 * 60.00208 * 1 2 3 31 31 H 1.08998 * 109.47026 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47289 * 305.00487 * 4 2 1 33 33 H 1.09003 * 109.47138 * 64.99775 * 4 2 1 34 34 H 0.96997 * 120.00028 * 0.02562 * 5 4 2 35 35 H 0.96996 * 120.00125 * 180.02562 * 9 8 6 36 36 H 1.09001 * 109.47111 * 269.99464 * 15 14 2 37 37 H 1.08992 * 109.47230 * 29.99758 * 15 14 2 38 38 H 1.09004 * 109.46696 * 150.00271 * 15 14 2 39 39 H 1.08994 * 109.46872 * 60.00875 * 18 16 14 40 40 H 1.08997 * 109.47234 * 300.00427 * 18 16 14 41 41 H 1.07999 * 120.01188 * 0.02562 * 23 22 21 42 42 H 1.08000 * 119.70808 * 180.02562 * 24 23 22 43 43 H 1.07997 * 120.17282 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5000 -0.8264 -1.1906 6 6 4.1838 -1.4388 -2.2067 7 1 3.6467 -1.8441 -3.0516 8 6 5.5672 -1.5389 -2.1509 9 7 6.2217 -1.0455 -1.1210 10 14 6.4998 -2.3750 -3.5367 11 1 6.2432 -1.6559 -4.8104 12 1 7.9546 -2.3508 -3.2395 13 1 6.0431 -3.7825 -3.6622 14 7 2.0183 -0.6906 1.1961 15 6 1.6643 -2.0932 1.4279 16 6 2.7932 -0.0357 2.0833 17 8 3.0859 1.1256 1.8916 18 6 3.2950 -0.7459 3.3140 19 6 4.1319 0.2014 4.1346 20 7 3.7043 0.9857 5.0755 21 8 4.7856 1.7209 5.6123 22 6 5.9224 1.3728 4.9750 23 6 7.2467 1.7749 5.0989 24 6 8.2121 1.2243 4.2849 25 6 7.8750 0.2658 3.3365 26 9 8.8339 -0.2645 2.5464 27 6 6.5674 -0.1468 3.1989 28 6 5.5797 0.3999 4.0222 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6054 -1.7198 -1.2952 33 1 1.7517 -0.1584 -2.1370 34 1 3.9823 -0.4628 -0.4316 35 1 7.1883 -1.1151 -1.0822 36 1 0.7375 -2.1444 1.9993 37 1 1.5295 -2.5968 0.4708 38 1 2.4628 -2.5819 1.9863 39 1 3.9004 -1.6025 3.0177 40 1 2.4470 -1.0881 3.9072 41 1 7.5191 2.5181 5.8337 42 1 9.2402 1.5397 4.3852 43 1 6.3082 -0.8920 2.4615 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753716608.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:28 Heat of formation + Delta-G solvation = -17.840562 kcal Electronic energy + Delta-G solvation = -29397.979785 eV Core-core repulsion = 25167.292121 eV Total energy + Delta-G solvation = -4230.687664 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.94528 -42.96690 -41.10616 -38.55610 -37.97836 -35.84752 -35.74065 -33.67061 -32.06566 -31.76474 -30.85420 -30.11728 -27.76648 -27.35985 -24.81387 -24.51834 -23.84038 -23.26743 -21.41369 -20.05706 -19.33874 -19.07991 -18.57549 -18.35947 -17.65097 -17.30266 -16.99746 -16.84237 -16.57709 -16.43172 -16.04402 -15.46889 -15.33919 -15.21658 -14.96595 -14.58520 -14.38370 -14.22896 -13.94335 -13.82308 -13.68550 -13.38091 -13.22752 -13.14765 -12.97375 -12.92556 -12.75018 -12.70542 -12.51089 -12.34363 -12.19704 -12.16642 -11.79758 -11.72747 -10.98580 -10.87038 -10.18356 -9.60531 -9.57829 -8.96668 -7.90380 -5.19677 -0.63612 -0.07426 0.74728 1.28535 1.46764 1.49165 1.54788 1.55424 2.01417 2.29597 2.56733 2.75966 2.92646 3.21768 3.39561 3.42132 3.46828 3.81892 3.89512 3.92962 4.10657 4.11940 4.14021 4.26774 4.29646 4.34201 4.48308 4.51488 4.74400 4.78234 4.80129 4.84553 4.86031 4.87456 4.94662 4.96414 5.06579 5.15707 5.31293 5.48152 5.50460 5.62938 6.00013 6.28245 6.37670 7.10986 7.36121 8.11427 8.35392 9.31155 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.008736 B = 0.005040 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3204.374491 B = 5554.270350 C = 8273.282405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.130 3.870 3 H 0.063 0.937 4 C 0.142 3.858 5 N -0.740 5.740 6 C -0.246 4.246 7 H 0.075 0.925 8 C -0.068 4.068 9 N -0.959 5.959 10 Si 0.967 3.033 11 H -0.284 1.284 12 H -0.299 1.299 13 H -0.274 1.274 14 N -0.591 5.591 15 C 0.069 3.931 16 C 0.516 3.484 17 O -0.585 6.585 18 C -0.069 4.069 19 C 0.160 3.840 20 N -0.295 5.295 21 O -0.099 6.099 22 C 0.058 3.942 23 C -0.086 4.086 24 C -0.078 4.078 25 C 0.060 3.940 26 F -0.142 7.142 27 C -0.078 4.078 28 C -0.179 4.179 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.041 0.959 33 H 0.026 0.974 34 H 0.372 0.628 35 H 0.248 0.752 36 H 0.091 0.909 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.144 0.856 40 H 0.160 0.840 41 H 0.189 0.811 42 H 0.192 0.808 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.009 -1.432 13.983 14.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.026 3.974 3 H 0.081 0.919 4 C 0.015 3.985 5 N -0.383 5.383 6 C -0.377 4.377 7 H 0.093 0.907 8 C -0.262 4.262 9 N -0.609 5.609 10 Si 0.797 3.203 11 H -0.210 1.210 12 H -0.226 1.226 13 H -0.200 1.200 14 N -0.323 5.323 15 C -0.073 4.073 16 C 0.303 3.697 17 O -0.465 6.465 18 C -0.109 4.109 19 C -0.021 4.021 20 N -0.038 5.038 21 O -0.110 6.110 22 C 0.004 3.996 23 C -0.105 4.105 24 C -0.098 4.098 25 C 0.041 3.959 26 F -0.120 7.120 27 C -0.099 4.099 28 C -0.182 4.182 29 H 0.080 0.920 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.059 0.941 33 H 0.044 0.956 34 H 0.204 0.796 35 H 0.057 0.943 36 H 0.109 0.891 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.162 0.838 40 H 0.177 0.823 41 H 0.206 0.794 42 H 0.209 0.791 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.855 -0.462 14.459 15.606 hybrid contribution 1.676 -0.544 -1.544 2.343 sum -4.179 -1.006 12.915 13.611 Atomic orbital electron populations 1.21955 0.91206 1.03839 1.02966 1.21270 0.96070 0.96255 0.83780 0.91856 1.21194 0.84280 0.97961 0.95049 1.42471 1.01863 1.69832 1.24153 1.19536 0.89891 1.28621 0.99679 0.90680 1.25475 0.97406 1.02972 1.00300 1.69816 1.06778 1.52343 1.31965 0.85312 0.77164 0.78745 0.79087 1.21002 1.22584 1.20023 1.47727 1.49522 1.13687 1.21349 1.22093 1.02335 0.79268 1.03563 1.20476 0.77986 0.86489 0.84737 1.90726 1.58807 1.19340 1.77649 1.20449 1.01432 0.96279 0.92771 1.24077 0.91943 0.93646 0.92444 1.79744 1.03967 1.07166 1.12970 1.89081 1.12749 1.56190 1.52984 1.20700 0.90679 0.94977 0.93196 1.20264 0.85361 1.02522 1.02352 1.21488 1.02645 0.93436 0.92194 1.17639 0.85192 0.98702 0.94406 1.91524 1.62245 1.85338 1.72917 1.20701 0.91089 1.00349 0.97786 1.20476 0.92688 1.03047 1.02024 0.91963 0.90426 0.90039 0.94074 0.95625 0.79618 0.94324 0.89054 0.90713 0.89894 0.83846 0.82275 0.79354 0.79083 0.84752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 9.19 71.98 0.66 -2.50 16 2 C 0.13 4.24 2.80 44.99 0.13 4.36 16 3 H 0.06 2.55 6.90 -2.39 -0.02 2.53 16 4 C 0.14 5.43 5.50 86.38 0.48 5.91 16 5 N -0.74 -37.23 5.43 -343.45 -1.87 -39.10 16 6 C -0.25 -13.48 9.99 84.04 0.84 -12.64 16 7 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 8 C -0.07 -3.89 5.50 84.86 0.47 -3.43 16 9 N -0.96 -58.20 13.06 21.65 0.28 -57.92 16 10 Si 0.97 45.95 29.55 68.60 2.03 47.98 16 11 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 12 H -0.30 -14.51 7.11 99.48 0.71 -13.81 16 13 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 14 N -0.59 -17.69 2.24 -822.59 -1.85 -19.54 16 15 C 0.07 1.42 9.30 127.77 1.19 2.61 16 16 C 0.52 17.79 7.37 87.66 0.65 18.43 16 17 O -0.58 -26.31 15.36 -3.03 -0.05 -26.36 16 18 C -0.07 -1.80 4.86 29.10 0.14 -1.66 16 19 C 0.16 5.12 5.96 45.04 0.27 5.39 16 20 N -0.30 -9.88 12.81 -43.47 -0.56 -10.44 16 21 O -0.10 -3.23 12.07 29.21 0.35 -2.88 16 22 C 0.06 1.72 7.48 22.97 0.17 1.89 16 23 C -0.09 -1.83 10.06 22.33 0.22 -1.60 16 24 C -0.08 -1.68 9.99 22.34 0.22 -1.46 16 25 C 0.06 1.82 7.29 22.35 0.16 1.98 16 26 F -0.14 -4.77 17.26 44.97 0.78 -4.00 16 27 C -0.08 -2.66 10.08 22.53 0.23 -2.43 16 28 C -0.18 -5.89 6.32 -20.21 -0.13 -6.02 16 29 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 31 H 0.08 1.47 7.67 -2.39 -0.02 1.45 16 32 H 0.04 1.44 6.88 -2.39 -0.02 1.42 16 33 H 0.03 1.00 8.14 -2.39 -0.02 0.99 16 34 H 0.37 20.61 7.06 -92.71 -0.65 19.96 16 35 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 36 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.07 1.68 6.53 -2.39 -0.02 1.66 16 38 H 0.08 1.50 6.44 -2.38 -0.02 1.48 16 39 H 0.14 3.23 7.40 -2.39 -0.02 3.21 16 40 H 0.16 2.75 8.11 -2.39 -0.02 2.73 16 41 H 0.19 2.40 8.06 -2.91 -0.02 2.38 16 42 H 0.19 2.51 8.06 -2.91 -0.02 2.49 16 43 H 0.13 5.02 8.06 -2.91 -0.02 5.00 16 Total: -1.00 -79.16 370.66 5.22 -73.94 By element: Atomic # 1 Polarization: 29.07 SS G_CDS: 0.41 Total: 29.47 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: 5.70 Total: 8.84 kcal Atomic # 7 Polarization: -123.01 SS G_CDS: -3.99 Total: -126.99 kcal Atomic # 8 Polarization: -29.55 SS G_CDS: 0.31 Total: -29.24 kcal Atomic # 9 Polarization: -4.77 SS G_CDS: 0.78 Total: -4.00 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -79.16 5.22 -73.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753716608.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.096 kcal (2) G-P(sol) polarization free energy of solvation -79.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds