Wall clock time and date at job start Tue Mar 31 2020 18:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 O 1.21287 * 120.00060 * 2 1 4 4 N 1.34779 * 119.99805 * 180.02562 * 2 1 3 5 5 C 1.40056 * 119.99724 * 184.61394 * 4 2 1 6 6 C 1.39038 * 119.96136 * 324.88892 * 5 4 2 7 7 C 1.38115 * 120.26860 * 180.02562 * 6 5 4 8 8 C 1.38339 * 120.19329 * 0.02562 * 7 6 5 9 9 F 1.35098 * 120.03619 * 179.97438 * 8 7 6 10 10 C 1.39811 * 119.92424 * 0.02562 * 8 7 6 11 11 C 1.47698 * 120.13386 * 179.72839 * 10 8 7 12 12 O 1.21573 * 120.00038 * 359.97438 * 11 10 8 13 13 N 1.34785 * 120.00412 * 179.97438 * 11 10 8 14 14 C 1.46493 * 120.00270 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.46976 * 180.02562 * 14 13 11 16 16 C 1.31000 * 120.00039 * 125.00493 * 15 14 13 17 17 C 1.50693 * 119.99999 * 180.02562 * 16 15 14 18 18 N 1.46503 * 109.47563 * 124.99520 * 17 16 15 19 19 C 1.36937 * 120.00604 * 179.97438 * 18 17 16 20 20 H 1.07996 * 119.99734 * 0.02562 * 19 18 17 21 21 C 1.38806 * 120.00053 * 179.97438 * 19 18 17 22 22 N 1.31613 * 120.00237 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99866 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47094 * 90.00280 * 23 21 19 25 25 H 1.48508 * 109.47394 * 210.00532 * 23 21 19 26 26 H 1.48501 * 109.47243 * 330.00197 * 23 21 19 27 27 C 1.38484 * 119.96032 * 144.89460 * 5 4 2 28 28 H 1.08997 * 109.47248 * 269.99951 * 1 2 3 29 29 H 1.08996 * 109.46762 * 29.99860 * 1 2 3 30 30 H 1.09002 * 109.47193 * 149.99672 * 1 2 3 31 31 H 0.97002 * 119.99883 * 4.60618 * 4 2 1 32 32 H 1.07994 * 119.86489 * 359.97438 * 6 5 4 33 33 H 1.07994 * 119.90509 * 179.97438 * 7 6 5 34 34 H 0.96997 * 119.99263 * 0.02562 * 13 11 10 35 35 H 1.09000 * 109.47311 * 300.00364 * 14 13 11 36 36 H 1.09001 * 109.47344 * 60.00396 * 14 13 11 37 37 H 1.07999 * 119.99817 * 304.99759 * 15 14 13 38 38 H 1.08003 * 119.99662 * 359.97438 * 16 15 14 39 39 H 1.08998 * 109.47151 * 244.99341 * 17 16 15 40 40 H 1.09001 * 109.47478 * 4.99629 * 17 16 15 41 41 H 0.97008 * 119.99623 * 359.97438 * 18 17 16 42 42 H 0.97003 * 120.00091 * 179.97438 * 22 21 19 43 43 H 1.08004 * 120.09656 * 0.02562 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5781 -1.1692 0.0970 6 6 4.3177 -0.1575 -0.5051 7 6 5.6958 -0.1535 -0.4133 8 6 6.3499 -1.1572 0.2784 9 9 7.6980 -1.1505 0.3657 10 6 5.6142 -2.1791 0.8861 11 6 6.3082 -3.2563 1.6206 12 8 7.5215 -3.2558 1.6974 13 7 5.5964 -4.2399 2.2059 14 6 6.2847 -5.3086 2.9340 15 6 5.2688 -6.2742 3.4877 16 6 5.3564 -7.5505 3.2055 17 6 4.3402 -8.5159 3.7588 18 7 3.7327 -9.2692 2.6589 19 6 2.7748 -10.2119 2.9215 20 1 2.4669 -10.3998 3.9394 21 6 2.1989 -10.9252 1.8792 22 7 2.5738 -10.6958 0.6386 23 14 0.8917 -12.2106 2.2374 24 1 -0.4493 -11.5732 2.2125 25 1 0.9516 -13.2782 1.2068 26 1 1.1336 -12.8026 3.5777 27 6 4.2213 -2.1790 0.7930 28 1 -0.3633 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5139 31 1 1.6982 -2.0059 -0.0684 32 1 3.8125 0.6280 -1.0474 33 1 6.2644 0.6350 -0.8836 34 1 4.6284 -4.2405 2.1443 35 1 6.9555 -5.8365 2.2561 36 1 6.8610 -4.8777 3.7527 37 1 4.4687 -5.9140 4.1174 38 1 6.1564 -7.9105 2.5756 39 1 4.8309 -9.2065 4.4446 40 1 3.5663 -7.9633 4.2916 41 1 4.0090 -9.1002 1.7445 42 1 2.1715 -11.1946 -0.0897 43 1 3.6472 -2.9653 1.2605 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754213227.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:05 Heat of formation + Delta-G solvation = -56.522226 kcal Electronic energy + Delta-G solvation = -26968.052862 eV Core-core repulsion = 22735.687835 eV Total energy + Delta-G solvation = -4232.365027 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.01297 -41.05213 -39.92169 -38.33710 -36.34051 -35.13050 -34.79488 -33.06517 -31.83989 -31.18709 -30.49304 -28.72649 -27.31362 -24.89188 -23.93643 -22.96556 -22.08499 -21.52046 -20.58102 -19.62133 -18.56576 -17.80492 -17.77847 -17.15508 -16.67586 -16.51835 -16.00620 -15.82261 -15.34162 -15.17314 -14.94100 -14.73387 -14.41790 -14.06043 -13.85015 -13.70798 -13.53849 -13.39039 -13.29466 -13.05696 -13.01176 -12.83492 -12.49806 -12.10179 -11.89783 -11.85648 -11.08800 -10.88017 -10.74967 -10.69017 -10.49637 -10.14799 -10.07750 -9.86092 -9.59160 -9.32422 -9.05378 -8.78342 -8.52958 -7.01016 -5.83785 -3.13561 0.34658 0.63587 1.99015 2.18957 2.47230 2.62793 3.17114 3.35849 3.38176 3.43829 3.45590 3.87116 4.13458 4.28751 4.30047 4.53969 4.65575 4.73616 4.76227 4.86669 4.90363 4.95339 5.19891 5.23874 5.32734 5.49294 5.52851 5.57920 5.66556 5.73641 5.76749 5.88350 5.93807 6.07224 6.22703 6.40427 6.41086 6.51500 6.80177 6.84040 7.08026 7.32801 7.54308 7.62707 8.02719 8.34446 9.45881 10.01798 10.37132 11.38839 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.009420 B = 0.002365 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2971.692732 B =11836.320116 C =14136.428890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.513 3.487 3 O -0.528 6.528 4 N -0.673 5.673 5 C 0.124 3.876 6 C -0.067 4.067 7 C -0.146 4.146 8 C 0.147 3.853 9 F -0.114 7.114 10 C -0.152 4.152 11 C 0.557 3.443 12 O -0.525 6.525 13 N -0.717 5.717 14 C 0.156 3.844 15 C -0.203 4.203 16 C -0.104 4.104 17 C 0.172 3.828 18 N -0.730 5.730 19 C -0.243 4.243 20 H 0.071 0.929 21 C -0.013 4.013 22 N -0.932 5.932 23 Si 0.909 3.091 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 C -0.082 4.082 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.417 0.583 32 H 0.153 0.847 33 H 0.147 0.853 34 H 0.401 0.599 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.115 0.885 38 H 0.110 0.890 39 H 0.032 0.968 40 H 0.026 0.974 41 H 0.385 0.615 42 H 0.256 0.744 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.071 23.753 -1.703 23.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.302 3.698 3 O -0.404 6.404 4 N -0.319 5.319 5 C 0.030 3.970 6 C -0.087 4.087 7 C -0.165 4.165 8 C 0.126 3.874 9 F -0.092 7.092 10 C -0.157 4.157 11 C 0.343 3.657 12 O -0.402 6.402 13 N -0.369 5.369 14 C 0.033 3.967 15 C -0.223 4.223 16 C -0.124 4.124 17 C 0.045 3.955 18 N -0.374 5.374 19 C -0.374 4.374 20 H 0.089 0.911 21 C -0.209 4.209 22 N -0.581 5.581 23 Si 0.740 3.260 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.207 1.207 27 C -0.103 4.103 28 H 0.118 0.882 29 H 0.117 0.883 30 H 0.105 0.895 31 H 0.254 0.746 32 H 0.171 0.829 33 H 0.165 0.835 34 H 0.237 0.763 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.133 0.867 38 H 0.128 0.872 39 H 0.049 0.951 40 H 0.043 0.957 41 H 0.219 0.781 42 H 0.066 0.934 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.107 24.380 -1.524 24.428 hybrid contribution -1.207 -1.223 -0.174 1.727 sum -1.100 23.157 -1.698 23.246 Atomic orbital electron populations 1.21905 0.90195 1.05557 1.05489 1.21098 0.91096 0.82905 0.74707 1.90733 1.70454 1.31304 1.47914 1.43664 1.04649 1.10496 1.73122 1.17572 0.83240 0.97261 0.98898 1.21324 0.92542 0.98213 0.96610 1.21086 0.94770 0.99113 1.01569 1.17685 0.77698 0.94654 0.97370 1.91601 1.27893 1.95890 1.93830 1.19816 0.93453 0.97749 1.04644 1.17929 0.87014 0.81560 0.79201 1.90850 1.13055 1.76295 1.59997 1.45923 1.10687 1.25532 1.54720 1.20358 0.93880 0.86915 0.95502 1.22677 1.01067 0.94432 1.04109 1.23356 0.97958 0.94825 0.96213 1.19830 0.91966 0.91843 0.91853 1.42300 1.46513 1.44310 1.04288 1.19240 1.12989 1.12099 0.93044 0.91071 1.24761 1.00505 1.00390 0.95257 1.69663 1.45859 1.44493 0.98055 0.86166 0.81548 0.81152 0.77167 1.21672 1.21693 1.20694 1.20968 0.92670 0.99219 0.97469 0.88163 0.88346 0.89548 0.74601 0.82944 0.83520 0.76327 0.90915 0.90813 0.86722 0.87185 0.95075 0.95660 0.78136 0.93430 0.84048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.53 10.31 36.01 0.37 -0.16 16 2 C 0.51 3.55 7.78 -10.98 -0.09 3.46 16 3 O -0.53 -5.74 14.53 5.55 0.08 -5.66 16 4 N -0.67 -3.99 5.34 -9.88 -0.05 -4.05 16 5 C 0.12 1.04 6.29 -83.71 -0.53 0.51 16 6 C -0.07 -0.61 8.69 -39.33 -0.34 -0.95 16 7 C -0.15 -1.36 10.01 -39.59 -0.40 -1.76 16 8 C 0.15 1.73 7.28 -38.96 -0.28 1.45 16 9 F -0.11 -1.60 15.54 2.25 0.03 -1.56 16 10 C -0.15 -1.73 5.88 -104.94 -0.62 -2.35 16 11 C 0.56 7.56 7.77 -12.39 -0.10 7.46 16 12 O -0.52 -9.08 15.33 5.30 0.08 -9.00 16 13 N -0.72 -8.26 5.50 -62.48 -0.34 -8.61 16 14 C 0.16 1.93 6.11 -5.20 -0.03 1.89 16 15 C -0.20 -2.62 9.24 -36.02 -0.33 -2.95 16 16 C -0.10 -1.62 9.24 -36.03 -0.33 -1.95 16 17 C 0.17 3.32 6.70 -5.20 -0.03 3.28 16 18 N -0.73 -18.06 5.59 -61.09 -0.34 -18.40 16 19 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 20 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 21 C -0.01 -0.37 5.50 -17.44 -0.10 -0.46 16 22 N -0.93 -27.60 13.06 55.49 0.72 -26.87 16 23 Si 0.91 21.82 29.55 -169.99 -5.02 16.80 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 27 C -0.08 -0.70 9.45 -38.98 -0.37 -1.07 16 28 H 0.10 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.09 0.10 8.14 -51.93 -0.42 -0.33 16 31 H 0.42 1.26 8.82 -40.82 -0.36 0.90 16 32 H 0.15 1.39 6.21 -52.49 -0.33 1.06 16 33 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 34 H 0.40 3.68 6.49 -40.82 -0.27 3.41 16 35 H 0.07 0.97 7.79 -51.93 -0.40 0.57 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.11 1.37 7.84 -52.49 -0.41 0.95 16 38 H 0.11 1.69 7.84 -52.48 -0.41 1.28 16 39 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.03 0.48 7.79 -51.93 -0.40 0.08 16 41 H 0.39 10.03 7.66 -40.82 -0.31 9.72 16 42 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 43 H 0.14 0.86 6.40 -52.48 -0.34 0.52 16 LS Contribution 377.75 15.07 5.69 5.69 Total: -1.00 -35.95 377.75 -7.78 -43.74 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -5.31 Total: 8.29 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: -3.32 Total: -0.38 kcal Atomic # 7 Polarization: -57.91 SS G_CDS: -0.01 Total: -57.92 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: 0.16 Total: -14.66 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.03 Total: -1.56 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.95 -7.78 -43.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754213227.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.786 kcal (2) G-P(sol) polarization free energy of solvation -35.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds