Wall clock time and date at job start Tue Mar 31 2020 18:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 O 1.21287 * 120.00060 * 2 1 4 4 N 1.34779 * 119.99805 * 180.02562 * 2 1 3 5 5 C 1.40056 * 119.99724 * 184.61394 * 4 2 1 6 6 C 1.39038 * 119.96136 * 324.88892 * 5 4 2 7 7 C 1.38115 * 120.26860 * 180.02562 * 6 5 4 8 8 C 1.38339 * 120.19329 * 0.02562 * 7 6 5 9 9 F 1.35098 * 120.03619 * 179.97438 * 8 7 6 10 10 C 1.39811 * 119.92424 * 0.02562 * 8 7 6 11 11 C 1.47698 * 120.13386 * 179.72839 * 10 8 7 12 12 O 1.21573 * 120.00038 * 359.97438 * 11 10 8 13 13 N 1.34785 * 120.00412 * 179.97438 * 11 10 8 14 14 C 1.46493 * 120.00270 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.46976 * 180.02562 * 14 13 11 16 16 C 1.31000 * 120.00039 * 125.00493 * 15 14 13 17 17 C 1.50693 * 119.99999 * 180.02562 * 16 15 14 18 18 N 1.46503 * 109.47563 * 124.99520 * 17 16 15 19 19 C 1.36937 * 120.00604 * 179.97438 * 18 17 16 20 20 H 1.07996 * 119.99734 * 0.02562 * 19 18 17 21 21 C 1.38806 * 120.00053 * 179.97438 * 19 18 17 22 22 N 1.31613 * 120.00237 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99866 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47094 * 90.00280 * 23 21 19 25 25 H 1.48508 * 109.47394 * 210.00532 * 23 21 19 26 26 H 1.48501 * 109.47243 * 330.00197 * 23 21 19 27 27 C 1.38484 * 119.96032 * 144.89460 * 5 4 2 28 28 H 1.08997 * 109.47248 * 269.99951 * 1 2 3 29 29 H 1.08996 * 109.46762 * 29.99860 * 1 2 3 30 30 H 1.09002 * 109.47193 * 149.99672 * 1 2 3 31 31 H 0.97002 * 119.99883 * 4.60618 * 4 2 1 32 32 H 1.07994 * 119.86489 * 359.97438 * 6 5 4 33 33 H 1.07994 * 119.90509 * 179.97438 * 7 6 5 34 34 H 0.96997 * 119.99263 * 0.02562 * 13 11 10 35 35 H 1.09000 * 109.47311 * 300.00364 * 14 13 11 36 36 H 1.09001 * 109.47344 * 60.00396 * 14 13 11 37 37 H 1.07999 * 119.99817 * 304.99759 * 15 14 13 38 38 H 1.08003 * 119.99662 * 359.97438 * 16 15 14 39 39 H 1.08998 * 109.47151 * 244.99341 * 17 16 15 40 40 H 1.09001 * 109.47478 * 4.99629 * 17 16 15 41 41 H 0.97008 * 119.99623 * 359.97438 * 18 17 16 42 42 H 0.97003 * 120.00091 * 179.97438 * 22 21 19 43 43 H 1.08004 * 120.09656 * 0.02562 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5781 -1.1692 0.0970 6 6 4.3177 -0.1575 -0.5051 7 6 5.6958 -0.1535 -0.4133 8 6 6.3499 -1.1572 0.2784 9 9 7.6980 -1.1505 0.3657 10 6 5.6142 -2.1791 0.8861 11 6 6.3082 -3.2563 1.6206 12 8 7.5215 -3.2558 1.6974 13 7 5.5964 -4.2399 2.2059 14 6 6.2847 -5.3086 2.9340 15 6 5.2688 -6.2742 3.4877 16 6 5.3564 -7.5505 3.2055 17 6 4.3402 -8.5159 3.7588 18 7 3.7327 -9.2692 2.6589 19 6 2.7748 -10.2119 2.9215 20 1 2.4669 -10.3998 3.9394 21 6 2.1989 -10.9252 1.8792 22 7 2.5738 -10.6958 0.6386 23 14 0.8917 -12.2106 2.2374 24 1 -0.4493 -11.5732 2.2125 25 1 0.9516 -13.2782 1.2068 26 1 1.1336 -12.8026 3.5777 27 6 4.2213 -2.1790 0.7930 28 1 -0.3633 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5139 31 1 1.6982 -2.0059 -0.0684 32 1 3.8125 0.6280 -1.0474 33 1 6.2644 0.6350 -0.8836 34 1 4.6284 -4.2405 2.1443 35 1 6.9555 -5.8365 2.2561 36 1 6.8610 -4.8777 3.7527 37 1 4.4687 -5.9140 4.1174 38 1 6.1564 -7.9105 2.5756 39 1 4.8309 -9.2065 4.4446 40 1 3.5663 -7.9633 4.2916 41 1 4.0090 -9.1002 1.7445 42 1 2.1715 -11.1946 -0.0897 43 1 3.6472 -2.9653 1.2605 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754213227.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:05 Heat of formation + Delta-G solvation = -82.334605 kcal Electronic energy + Delta-G solvation = -26969.172170 eV Core-core repulsion = 22735.687835 eV Total energy + Delta-G solvation = -4233.484336 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.96068 -41.73348 -40.85406 -39.12333 -37.68080 -36.28782 -35.77541 -34.53178 -32.97018 -32.03374 -31.68616 -29.27422 -28.71123 -26.24594 -25.12900 -23.88041 -23.41236 -22.37488 -21.47147 -20.74212 -19.45583 -19.06481 -18.59082 -18.44876 -17.48170 -17.34922 -16.94802 -16.76867 -16.59972 -16.22063 -16.08844 -15.74303 -15.47138 -15.22561 -15.06241 -14.98173 -14.55906 -14.46320 -14.31831 -14.08642 -13.66763 -13.49754 -13.32877 -13.27028 -12.99099 -12.86827 -12.73408 -12.65053 -12.18553 -11.98361 -11.78545 -11.48286 -11.32649 -11.02914 -10.94156 -10.48049 -10.30170 -9.99595 -9.25378 -8.99895 -7.94730 -5.24472 -0.48283 -0.08713 1.03229 1.40088 1.49936 1.51378 1.59958 1.72112 1.97368 2.19007 2.53248 2.58272 3.07756 3.39239 3.43585 3.53213 3.72886 3.79863 3.97054 4.03722 4.09795 4.24877 4.27078 4.45905 4.53143 4.55439 4.66809 4.68575 4.70700 4.81440 4.93944 4.98052 4.99674 5.02090 5.11126 5.22280 5.23368 5.49381 5.66122 5.68910 5.83316 6.27345 6.35589 6.37455 7.03252 7.05732 7.33738 8.07698 8.31689 9.28619 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.009420 B = 0.002365 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2971.692732 B =11836.320116 C =14136.428890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.509 3.491 3 O -0.572 6.572 4 N -0.661 5.661 5 C 0.127 3.873 6 C -0.069 4.069 7 C -0.139 4.139 8 C 0.119 3.881 9 F -0.135 7.135 10 C -0.165 4.165 11 C 0.555 3.445 12 O -0.570 6.570 13 N -0.704 5.704 14 C 0.157 3.843 15 C -0.161 4.161 16 C -0.129 4.129 17 C 0.173 3.827 18 N -0.744 5.744 19 C -0.248 4.248 20 H 0.078 0.922 21 C -0.074 4.074 22 N -0.969 5.969 23 Si 0.975 3.025 24 H -0.283 1.283 25 H -0.297 1.297 26 H -0.270 1.270 27 C -0.071 4.071 28 H 0.113 0.887 29 H 0.098 0.902 30 H 0.111 0.889 31 H 0.433 0.567 32 H 0.154 0.846 33 H 0.164 0.836 34 H 0.415 0.585 35 H 0.062 0.938 36 H 0.081 0.919 37 H 0.135 0.865 38 H 0.106 0.894 39 H 0.029 0.971 40 H 0.036 0.964 41 H 0.375 0.625 42 H 0.252 0.748 43 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.395 24.162 -0.886 24.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.300 3.700 3 O -0.451 6.451 4 N -0.309 5.309 5 C 0.032 3.968 6 C -0.090 4.090 7 C -0.158 4.158 8 C 0.098 3.902 9 F -0.113 7.113 10 C -0.169 4.169 11 C 0.343 3.657 12 O -0.450 6.450 13 N -0.356 5.356 14 C 0.034 3.966 15 C -0.180 4.180 16 C -0.149 4.149 17 C 0.048 3.952 18 N -0.387 5.387 19 C -0.379 4.379 20 H 0.096 0.904 21 C -0.267 4.267 22 N -0.619 5.619 23 Si 0.803 3.197 24 H -0.210 1.210 25 H -0.224 1.224 26 H -0.195 1.195 27 C -0.092 4.092 28 H 0.131 0.869 29 H 0.117 0.883 30 H 0.130 0.870 31 H 0.273 0.727 32 H 0.171 0.829 33 H 0.182 0.818 34 H 0.253 0.747 35 H 0.080 0.920 36 H 0.099 0.901 37 H 0.152 0.848 38 H 0.124 0.876 39 H 0.047 0.953 40 H 0.054 0.946 41 H 0.206 0.794 42 H 0.061 0.939 43 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -2.266 24.770 -0.660 24.882 hybrid contribution -0.502 -1.238 -0.384 1.390 sum -2.768 23.532 -1.044 23.717 Atomic orbital electron populations 1.21944 0.86937 1.06839 1.06650 1.21851 0.92567 0.82222 0.73331 1.90719 1.71559 1.32868 1.49970 1.43674 1.03575 1.11325 1.72323 1.17690 0.84529 0.96620 0.97964 1.21449 0.92439 0.98474 0.96612 1.21233 0.95027 0.98772 1.00759 1.18016 0.77068 0.96012 0.99064 1.91543 1.29426 1.96122 1.94201 1.19752 0.94547 0.97311 1.05321 1.18256 0.86592 0.81996 0.78879 1.90824 1.15010 1.77405 1.61763 1.45773 1.11322 1.24661 1.53890 1.20295 0.93727 0.86947 0.95648 1.22735 1.00270 0.93230 1.01758 1.23019 0.98153 0.95174 0.98520 1.19910 0.92719 0.92092 0.90512 1.42530 1.46409 1.44579 1.05164 1.19656 1.12876 1.12125 0.93285 0.90425 1.25582 1.03065 1.02842 0.95178 1.69817 1.47433 1.45827 0.98844 0.85128 0.79039 0.78423 0.77082 1.21003 1.22370 1.19531 1.21126 0.91489 0.99716 0.96841 0.86874 0.88344 0.87015 0.72666 0.82866 0.81816 0.74712 0.92004 0.90055 0.84753 0.87567 0.95335 0.94575 0.79370 0.93945 0.81328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.54 10.31 71.24 0.73 0.20 16 2 C 0.51 5.97 7.78 87.66 0.68 6.66 16 3 O -0.57 -11.85 14.53 -3.05 -0.04 -11.89 16 4 N -0.66 -6.13 5.34 -303.55 -1.62 -7.75 16 5 C 0.13 1.89 6.29 38.08 0.24 2.13 16 6 C -0.07 -1.19 8.69 22.43 0.19 -1.00 16 7 C -0.14 -2.54 10.01 22.26 0.22 -2.32 16 8 C 0.12 2.85 7.28 22.67 0.17 3.01 16 9 F -0.13 -3.95 15.54 44.97 0.70 -3.25 16 10 C -0.16 -3.66 5.88 -20.07 -0.12 -3.78 16 11 C 0.55 14.86 7.77 86.74 0.67 15.53 16 12 O -0.57 -20.13 15.33 -3.95 -0.06 -20.19 16 13 N -0.70 -15.05 5.50 -469.84 -2.58 -17.63 16 14 C 0.16 3.63 6.11 85.64 0.52 4.15 16 15 C -0.16 -3.74 9.24 25.65 0.24 -3.51 16 16 C -0.13 -3.85 9.24 25.64 0.24 -3.62 16 17 C 0.17 6.48 6.70 85.63 0.57 7.05 16 18 N -0.74 -36.54 5.59 -347.19 -1.94 -38.48 16 19 C -0.25 -13.40 9.99 84.03 0.84 -12.56 16 20 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 21 C -0.07 -4.14 5.50 84.86 0.47 -3.68 16 22 N -0.97 -57.70 13.06 21.65 0.28 -57.42 16 23 Si 0.97 44.48 29.55 68.60 2.03 46.51 16 24 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 25 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 26 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 27 C -0.07 -1.07 9.45 22.66 0.21 -0.85 16 28 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 29 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.11 -0.19 8.14 -2.39 -0.02 -0.20 16 31 H 0.43 1.15 8.82 -92.71 -0.82 0.33 16 32 H 0.15 2.68 6.21 -2.91 -0.02 2.66 16 33 H 0.16 2.28 8.06 -2.91 -0.02 2.26 16 34 H 0.41 6.43 6.49 -92.71 -0.60 5.83 16 35 H 0.06 1.62 7.79 -2.39 -0.02 1.60 16 36 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.13 2.68 7.84 -2.91 -0.02 2.66 16 38 H 0.11 3.25 7.84 -2.91 -0.02 3.23 16 39 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.04 1.28 7.79 -2.39 -0.02 1.27 16 41 H 0.37 19.65 7.66 -92.70 -0.71 18.94 16 42 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 43 H 0.17 1.48 6.40 -2.91 -0.02 1.46 16 Total: -1.00 -79.03 377.75 1.60 -77.43 By element: Atomic # 1 Polarization: 26.31 SS G_CDS: -1.04 Total: 25.26 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: 5.89 Total: 7.42 kcal Atomic # 7 Polarization: -115.42 SS G_CDS: -5.86 Total: -121.28 kcal Atomic # 8 Polarization: -31.98 SS G_CDS: -0.10 Total: -32.08 kcal Atomic # 9 Polarization: -3.95 SS G_CDS: 0.70 Total: -3.25 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -79.03 1.60 -77.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754213227.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.904 kcal (2) G-P(sol) polarization free energy of solvation -79.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds