Wall clock time and date at job start Tue Mar 31 2020 18:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46506 * 119.99926 * 2 1 4 4 C 1.52999 * 109.46873 * 270.00201 * 3 2 1 5 5 H 1.08997 * 109.47377 * 304.99540 * 4 3 2 6 6 O 1.42898 * 109.47216 * 64.99966 * 4 3 2 7 7 C 1.53008 * 109.47036 * 184.99763 * 4 3 2 8 8 N 1.46495 * 109.47004 * 179.97438 * 7 4 3 9 9 C 1.36941 * 119.99675 * 179.72355 * 8 7 4 10 10 H 1.07998 * 120.00054 * 0.27915 * 9 8 7 11 11 C 1.38813 * 120.00254 * 180.27806 * 9 8 7 12 12 N 1.31621 * 119.99600 * 359.97438 * 11 9 8 13 13 Si 1.86791 * 120.00308 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.47250 * 59.99697 * 13 11 9 15 15 H 1.48500 * 109.47248 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.47065 * 299.99776 * 13 11 9 17 17 C 1.34775 * 120.00630 * 180.02562 * 2 1 3 18 18 O 1.21675 * 120.00673 * 175.00107 * 17 2 1 19 19 C 1.46829 * 119.99589 * 355.00147 * 17 2 1 20 20 C 1.41306 * 126.49653 * 260.22035 * 19 17 2 21 21 N 1.30372 * 108.45963 * 180.02562 * 20 19 17 22 22 N 1.39986 * 109.30674 * 359.97438 * 21 20 19 23 23 C 1.35990 * 108.16762 * 359.72802 * 22 21 20 24 24 N 1.37177 * 120.54491 * 179.60631 * 23 22 21 25 25 H 0.97006 * 119.87581 * 180.30209 * 24 23 22 26 26 C 1.36348 * 120.24501 * 0.60288 * 24 23 22 27 27 C 1.35249 * 119.83315 * 359.69870 * 26 24 23 28 28 C 1.34858 * 131.92107 * 179.97438 * 22 21 20 29 29 O 1.21821 * 120.11571 * 0.02562 * 28 22 21 30 30 H 1.09004 * 109.47646 * 95.05472 * 1 2 3 31 31 H 1.09008 * 109.47073 * 215.05167 * 1 2 3 32 32 H 1.09001 * 109.47664 * 335.05051 * 1 2 3 33 33 H 1.08995 * 109.46879 * 150.00344 * 3 2 1 34 34 H 1.08999 * 109.46974 * 29.99756 * 3 2 1 35 35 H 0.96702 * 114.00171 * 60.00166 * 6 4 3 36 36 H 1.08997 * 109.46463 * 59.99859 * 7 4 3 37 37 H 1.08997 * 109.46855 * 300.00097 * 7 4 3 38 38 H 0.97001 * 120.00597 * 0.02562 * 8 7 4 39 39 H 0.97005 * 120.00071 * 179.97438 * 12 11 9 40 40 H 1.07994 * 125.76969 * 359.96829 * 20 19 17 41 41 H 1.07998 * 120.08667 * 179.72688 * 26 24 23 42 42 H 1.07998 * 120.15342 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7104 -1.4425 5 1 2.9641 0.9132 -1.9816 6 8 1.2059 1.9935 -2.0814 7 6 3.3236 2.9682 -1.4444 8 7 3.5682 3.3907 -2.8256 9 6 4.3241 4.5046 -3.0772 10 1 4.7436 5.0689 -2.2575 11 6 4.5511 4.9083 -4.3857 12 7 4.0402 4.2203 -5.3847 13 14 5.5828 6.4272 -4.7289 14 1 6.9456 6.2365 -4.1708 15 1 5.6746 6.6423 -6.1954 16 1 4.9487 7.6102 -4.0934 17 6 2.1389 -1.1671 -0.0005 18 8 3.3522 -1.1691 -0.0923 19 6 1.4090 -2.4363 0.1097 20 6 1.2425 -3.2112 1.2796 21 7 0.5374 -4.2659 0.9792 22 7 0.2122 -4.2330 -0.3820 23 6 0.7439 -3.1018 -0.9177 24 7 0.5829 -2.8192 -2.2504 25 1 0.9700 -2.0117 -2.6233 26 6 -0.1243 -3.6660 -3.0514 27 6 -0.6637 -4.7916 -2.5306 28 6 -0.4900 -5.0805 -1.1613 29 8 -0.9725 -6.0922 -0.6841 30 1 -0.3634 -0.0905 -1.0237 31 1 -0.3634 -0.8413 0.5902 32 1 -0.3634 0.9317 0.4335 33 1 3.1498 1.1384 0.5138 34 1 1.6083 2.0284 0.5138 35 1 0.6953 2.6950 -1.6542 36 1 4.2744 2.7522 -0.9571 37 1 2.8119 3.7654 -0.9053 38 1 3.1911 2.8841 -3.5619 39 1 4.1985 4.5026 -6.2992 40 1 1.6339 -2.9709 2.2570 41 1 -0.2532 -3.4388 -4.0994 42 1 -1.2252 -5.4658 -3.1603 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755791804.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:16 Heat of formation + Delta-G solvation = 16.573065 kcal Electronic energy + Delta-G solvation = -28744.377653 eV Core-core repulsion = 24535.102238 eV Total energy + Delta-G solvation = -4209.275415 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.10072 -40.11669 -39.06529 -38.37869 -37.49599 -35.30300 -34.06791 -33.29988 -31.92933 -31.46055 -30.37444 -29.22080 -26.92517 -25.80226 -24.86292 -24.17447 -23.12470 -22.23406 -21.28709 -20.13339 -19.05329 -18.58966 -17.96447 -17.28739 -17.18964 -16.91145 -16.63623 -16.18057 -15.99727 -15.26612 -15.02494 -14.49990 -14.31335 -14.12560 -14.01984 -13.96922 -13.66320 -13.55453 -13.49973 -13.07284 -13.00930 -12.73337 -12.50715 -12.13353 -11.62241 -11.46947 -10.98977 -10.89237 -10.84454 -10.77041 -10.46221 -10.30027 -10.21271 -9.91981 -9.85877 -9.73356 -8.93101 -8.66153 -8.45467 -6.96514 -5.79330 -3.08572 0.42666 0.59164 1.46827 1.97220 2.05019 2.31074 2.82470 2.90545 3.41401 3.45869 3.46838 3.65858 3.98099 4.23895 4.34927 4.49177 4.52648 4.69048 4.77199 4.86084 4.96154 5.00126 5.03525 5.11903 5.26365 5.48175 5.51289 5.58751 5.64348 5.68996 5.83818 5.90647 6.16090 6.17150 6.32458 6.46434 6.49216 6.64132 6.67096 7.12493 7.42462 7.64717 7.90421 7.95639 8.39168 9.50732 10.07931 10.43606 11.43052 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.020512 B = 0.002485 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.707100 B =11263.170698 C =12005.266041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.599 5.599 3 C 0.086 3.914 4 C 0.086 3.914 5 H 0.100 0.900 6 O -0.553 6.553 7 C 0.126 3.874 8 N -0.725 5.725 9 C -0.243 4.243 10 H 0.069 0.931 11 C -0.012 4.012 12 N -0.931 5.931 13 Si 0.908 3.092 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 C 0.590 3.410 18 O -0.520 6.520 19 C -0.291 4.291 20 C 0.135 3.865 21 N -0.262 5.262 22 N -0.355 5.355 23 C 0.343 3.657 24 N -0.596 5.596 25 H 0.442 0.558 26 C 0.195 3.805 27 C -0.307 4.307 28 C 0.565 3.435 29 O -0.490 6.490 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.368 0.632 36 H 0.028 0.972 37 H 0.020 0.980 38 H 0.388 0.612 39 H 0.256 0.744 40 H 0.207 0.793 41 H 0.193 0.807 42 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.599 -13.634 9.255 20.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.331 5.331 3 C -0.037 4.037 4 C 0.026 3.974 5 H 0.118 0.882 6 O -0.357 6.357 7 C -0.003 4.003 8 N -0.370 5.370 9 C -0.374 4.374 10 H 0.087 0.913 11 C -0.209 4.209 12 N -0.579 5.579 13 Si 0.739 3.261 14 H -0.212 1.212 15 H -0.217 1.217 16 H -0.213 1.213 17 C 0.376 3.624 18 O -0.395 6.395 19 C -0.310 4.310 20 C -0.055 4.055 21 N -0.079 5.079 22 N -0.155 5.155 23 C 0.121 3.879 24 N -0.213 5.213 25 H 0.282 0.718 26 C 0.067 3.933 27 C -0.336 4.336 28 C 0.363 3.637 29 O -0.360 6.360 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.113 0.887 34 H 0.102 0.898 35 H 0.215 0.785 36 H 0.046 0.954 37 H 0.037 0.963 38 H 0.223 0.777 39 H 0.065 0.935 40 H 0.223 0.777 41 H 0.210 0.790 42 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -12.565 -15.814 9.507 22.323 hybrid contribution 0.781 2.288 -0.612 2.494 sum -11.783 -13.526 8.895 20.023 Atomic orbital electron populations 1.21753 0.79173 1.02958 1.01936 1.47724 1.07127 1.05566 1.72716 1.22333 0.98472 0.84207 0.98679 1.22542 0.85128 0.98213 0.91533 0.88213 1.86566 1.32357 1.59172 1.57627 1.21217 0.96416 0.92894 0.89760 1.42213 1.61993 1.32033 1.00735 1.19176 1.23945 1.02477 0.91818 0.91305 1.24750 1.01157 0.99384 0.95577 1.69666 1.49214 1.40793 0.98266 0.86259 0.80172 0.82782 0.76901 1.21228 1.21659 1.21265 1.17087 0.86404 0.82167 0.76770 1.90879 1.13460 1.87027 1.48113 1.19387 1.16054 1.02659 0.92868 1.24092 0.93357 0.89369 0.98648 1.77586 1.20472 1.21701 0.88166 1.47990 1.41513 1.17462 1.08577 1.18700 0.95072 0.89367 0.84757 1.40993 1.50034 1.25829 1.04417 0.71752 1.22452 0.85949 0.87909 0.97006 1.21668 1.15277 1.02922 0.93773 1.17167 0.77574 0.82590 0.86361 1.90921 1.45753 1.24537 1.74830 0.92434 0.91627 0.90624 0.88662 0.89834 0.78514 0.95444 0.96252 0.77746 0.93467 0.77662 0.79010 0.80260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.61 9.84 59.84 0.59 1.20 16 2 N -0.60 -5.93 2.84 -183.07 -0.52 -6.45 16 3 C 0.09 0.95 5.07 -4.04 -0.02 0.93 16 4 C 0.09 1.25 3.30 -26.73 -0.09 1.17 16 5 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 6 O -0.55 -7.72 12.64 -35.23 -0.45 -8.17 16 7 C 0.13 2.35 5.92 -4.04 -0.02 2.32 16 8 N -0.72 -17.96 5.49 -59.91 -0.33 -18.28 16 9 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 10 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 11 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 12 N -0.93 -27.91 13.06 55.49 0.72 -27.19 16 13 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 14 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 15 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 16 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 17 C 0.59 7.03 7.51 -12.79 -0.10 6.93 16 18 O -0.52 -8.33 16.74 5.21 0.09 -8.25 16 19 C -0.29 -3.04 4.06 -104.86 -0.43 -3.46 16 20 C 0.14 1.33 11.99 -17.01 -0.20 1.13 16 21 N -0.26 -3.29 12.54 30.85 0.39 -2.90 16 22 N -0.35 -4.24 3.79 -13.82 -0.05 -4.29 16 23 C 0.34 3.35 7.89 -153.53 -1.21 2.14 16 24 N -0.60 -3.83 5.39 -11.73 -0.06 -3.89 16 25 H 0.44 2.42 8.93 -40.82 -0.36 2.06 16 26 C 0.20 0.81 11.25 -16.61 -0.19 0.62 16 27 C -0.31 -2.10 9.95 -39.59 -0.39 -2.49 16 28 C 0.56 6.75 7.70 -15.17 -0.12 6.64 16 29 O -0.49 -7.69 17.90 5.08 0.09 -7.60 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.45 6.99 -51.92 -0.36 0.08 16 32 H 0.07 0.43 7.84 -51.93 -0.41 0.02 16 33 H 0.10 1.16 7.49 -51.93 -0.39 0.77 16 34 H 0.08 0.71 7.86 -51.93 -0.41 0.30 16 35 H 0.37 4.07 9.05 45.56 0.41 4.48 16 36 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.39 10.31 7.54 -40.82 -0.31 10.00 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.21 1.30 8.06 -52.49 -0.42 0.88 16 41 H 0.19 -0.09 8.06 -52.49 -0.42 -0.51 16 42 H 0.18 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 369.79 15.07 5.57 5.57 Total: -1.00 -39.55 369.79 -6.33 -45.88 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -4.33 Total: 8.66 kcal Atomic # 6 Polarization: 12.22 SS G_CDS: -2.42 Total: 9.79 kcal Atomic # 7 Polarization: -63.15 SS G_CDS: 0.15 Total: -63.00 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.27 Total: -24.01 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -39.55 -6.33 -45.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755791804.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.454 kcal (2) G-P(sol) polarization free energy of solvation -39.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds