Wall clock time and date at job start Tue Mar 31 2020 18:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46506 * 119.99926 * 2 1 4 4 C 1.52999 * 109.46873 * 270.00201 * 3 2 1 5 5 H 1.08997 * 109.47377 * 304.99540 * 4 3 2 6 6 O 1.42898 * 109.47216 * 64.99966 * 4 3 2 7 7 C 1.53008 * 109.47036 * 184.99763 * 4 3 2 8 8 N 1.46495 * 109.47004 * 179.97438 * 7 4 3 9 9 C 1.36941 * 119.99675 * 179.72355 * 8 7 4 10 10 H 1.07998 * 120.00054 * 0.27915 * 9 8 7 11 11 C 1.38813 * 120.00254 * 180.27806 * 9 8 7 12 12 N 1.31621 * 119.99600 * 359.97438 * 11 9 8 13 13 Si 1.86791 * 120.00308 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.47250 * 59.99697 * 13 11 9 15 15 H 1.48500 * 109.47248 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.47065 * 299.99776 * 13 11 9 17 17 C 1.34775 * 120.00630 * 180.02562 * 2 1 3 18 18 O 1.21675 * 120.00673 * 175.00107 * 17 2 1 19 19 C 1.46829 * 119.99589 * 355.00147 * 17 2 1 20 20 C 1.41306 * 126.49653 * 260.22035 * 19 17 2 21 21 N 1.30372 * 108.45963 * 180.02562 * 20 19 17 22 22 N 1.39986 * 109.30674 * 359.97438 * 21 20 19 23 23 C 1.35990 * 108.16762 * 359.72802 * 22 21 20 24 24 N 1.37177 * 120.54491 * 179.60631 * 23 22 21 25 25 H 0.97006 * 119.87581 * 180.30209 * 24 23 22 26 26 C 1.36348 * 120.24501 * 0.60288 * 24 23 22 27 27 C 1.35249 * 119.83315 * 359.69870 * 26 24 23 28 28 C 1.34858 * 131.92107 * 179.97438 * 22 21 20 29 29 O 1.21821 * 120.11571 * 0.02562 * 28 22 21 30 30 H 1.09004 * 109.47646 * 95.05472 * 1 2 3 31 31 H 1.09008 * 109.47073 * 215.05167 * 1 2 3 32 32 H 1.09001 * 109.47664 * 335.05051 * 1 2 3 33 33 H 1.08995 * 109.46879 * 150.00344 * 3 2 1 34 34 H 1.08999 * 109.46974 * 29.99756 * 3 2 1 35 35 H 0.96702 * 114.00171 * 60.00166 * 6 4 3 36 36 H 1.08997 * 109.46463 * 59.99859 * 7 4 3 37 37 H 1.08997 * 109.46855 * 300.00097 * 7 4 3 38 38 H 0.97001 * 120.00597 * 0.02562 * 8 7 4 39 39 H 0.97005 * 120.00071 * 179.97438 * 12 11 9 40 40 H 1.07994 * 125.76969 * 359.96829 * 20 19 17 41 41 H 1.07998 * 120.08667 * 179.72688 * 26 24 23 42 42 H 1.07998 * 120.15342 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7104 -1.4425 5 1 2.9641 0.9132 -1.9816 6 8 1.2059 1.9935 -2.0814 7 6 3.3236 2.9682 -1.4444 8 7 3.5682 3.3907 -2.8256 9 6 4.3241 4.5046 -3.0772 10 1 4.7436 5.0689 -2.2575 11 6 4.5511 4.9083 -4.3857 12 7 4.0402 4.2203 -5.3847 13 14 5.5828 6.4272 -4.7289 14 1 6.9456 6.2365 -4.1708 15 1 5.6746 6.6423 -6.1954 16 1 4.9487 7.6102 -4.0934 17 6 2.1389 -1.1671 -0.0005 18 8 3.3522 -1.1691 -0.0923 19 6 1.4090 -2.4363 0.1097 20 6 1.2425 -3.2112 1.2796 21 7 0.5374 -4.2659 0.9792 22 7 0.2122 -4.2330 -0.3820 23 6 0.7439 -3.1018 -0.9177 24 7 0.5829 -2.8192 -2.2504 25 1 0.9700 -2.0117 -2.6233 26 6 -0.1243 -3.6660 -3.0514 27 6 -0.6637 -4.7916 -2.5306 28 6 -0.4900 -5.0805 -1.1613 29 8 -0.9725 -6.0922 -0.6841 30 1 -0.3634 -0.0905 -1.0237 31 1 -0.3634 -0.8413 0.5902 32 1 -0.3634 0.9317 0.4335 33 1 3.1498 1.1384 0.5138 34 1 1.6083 2.0284 0.5138 35 1 0.6953 2.6950 -1.6542 36 1 4.2744 2.7522 -0.9571 37 1 2.8119 3.7654 -0.9053 38 1 3.1911 2.8841 -3.5619 39 1 4.1985 4.5026 -6.2992 40 1 1.6339 -2.9709 2.2570 41 1 -0.2532 -3.4388 -4.0994 42 1 -1.2252 -5.4658 -3.1603 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755791804.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:15 Heat of formation + Delta-G solvation = -16.553065 kcal Electronic energy + Delta-G solvation = -28745.814110 eV Core-core repulsion = 24535.102238 eV Total energy + Delta-G solvation = -4210.711872 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.87148 -41.03296 -39.92631 -39.09584 -38.69185 -36.39220 -35.74859 -34.13359 -33.18492 -32.57229 -31.45076 -30.30443 -27.88102 -27.05015 -25.57186 -25.25912 -24.40295 -23.26777 -22.58339 -20.93053 -19.81589 -19.25155 -19.21596 -18.70579 -18.09628 -17.78682 -17.65371 -17.01831 -16.93849 -16.49361 -16.34441 -16.10187 -15.33164 -15.05239 -14.94602 -14.87933 -14.55148 -14.52563 -14.26285 -14.24433 -14.07701 -13.81354 -13.62346 -13.25235 -12.96637 -12.71846 -12.53928 -12.30402 -12.19532 -12.00748 -11.80251 -11.77404 -11.30277 -11.20101 -11.00399 -10.94422 -10.68012 -9.60349 -9.16659 -8.98050 -7.93102 -5.21794 -0.20247 -0.12561 0.73752 1.18343 1.36711 1.46721 1.48643 1.51442 1.57399 1.98885 2.16703 2.57391 3.01033 3.34375 3.38799 3.53940 3.64282 3.72685 3.82358 3.86412 4.09595 4.12621 4.24132 4.34361 4.45504 4.51038 4.51849 4.62043 4.70440 4.80040 4.94784 4.99027 5.01241 5.21721 5.26896 5.47298 5.50522 5.63072 5.74459 5.86949 6.27956 6.28691 6.62593 6.93835 7.05153 7.35495 8.12377 8.34873 9.29941 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.020512 B = 0.002485 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.707100 B =11263.170698 C =12005.266041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.589 5.589 3 C 0.095 3.905 4 C 0.106 3.894 5 H 0.071 0.929 6 O -0.559 6.559 7 C 0.121 3.879 8 N -0.740 5.740 9 C -0.247 4.247 10 H 0.076 0.924 11 C -0.075 4.075 12 N -0.968 5.968 13 Si 0.973 3.027 14 H -0.280 1.280 15 H -0.296 1.296 16 H -0.275 1.275 17 C 0.596 3.404 18 O -0.568 6.568 19 C -0.305 4.305 20 C 0.147 3.853 21 N -0.308 5.308 22 N -0.366 5.366 23 C 0.349 3.651 24 N -0.586 5.586 25 H 0.450 0.550 26 C 0.229 3.771 27 C -0.323 4.323 28 C 0.547 3.453 29 O -0.549 6.549 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.120 0.880 35 H 0.384 0.616 36 H 0.022 0.978 37 H 0.039 0.961 38 H 0.376 0.624 39 H 0.251 0.749 40 H 0.234 0.766 41 H 0.252 0.748 42 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.440 -12.036 9.055 20.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.319 5.319 3 C -0.028 4.028 4 C 0.045 3.955 5 H 0.089 0.911 6 O -0.365 6.365 7 C -0.006 4.006 8 N -0.383 5.383 9 C -0.379 4.379 10 H 0.094 0.906 11 C -0.268 4.268 12 N -0.618 5.618 13 Si 0.801 3.199 14 H -0.207 1.207 15 H -0.222 1.222 16 H -0.201 1.201 17 C 0.383 3.617 18 O -0.447 6.447 19 C -0.323 4.323 20 C -0.042 4.042 21 N -0.126 5.126 22 N -0.166 5.166 23 C 0.126 3.874 24 N -0.203 5.203 25 H 0.292 0.708 26 C 0.101 3.899 27 C -0.351 4.351 28 C 0.349 3.651 29 O -0.425 6.425 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.117 0.883 33 H 0.102 0.898 34 H 0.138 0.862 35 H 0.233 0.767 36 H 0.040 0.960 37 H 0.057 0.943 38 H 0.208 0.792 39 H 0.059 0.941 40 H 0.250 0.750 41 H 0.268 0.732 42 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -13.437 -14.166 9.350 21.648 hybrid contribution 1.027 1.847 -0.544 2.182 sum -12.410 -12.319 8.806 19.578 Atomic orbital electron populations 1.21958 0.77026 1.04473 1.02587 1.47724 1.08290 1.04591 1.71330 1.22188 0.99075 0.85433 0.96128 1.22165 0.84599 0.95320 0.93413 0.91089 1.86541 1.31842 1.59916 1.58237 1.21449 0.97191 0.95252 0.86729 1.42415 1.61681 1.31326 1.02850 1.19609 1.23299 1.02927 0.92057 0.90641 1.25564 1.03044 1.02556 0.95608 1.69821 1.51120 1.42594 0.98287 0.85229 0.78731 0.79649 0.76244 1.20674 1.22226 1.20125 1.17206 0.85734 0.82922 0.75856 1.90861 1.15550 1.87688 1.50555 1.19266 1.16990 1.02571 0.93495 1.24573 0.91798 0.88147 0.99666 1.77553 1.22450 1.23350 0.89201 1.48112 1.41727 1.18063 1.08667 1.18846 0.94171 0.88439 0.85976 1.41286 1.49383 1.26294 1.03319 0.70814 1.23309 0.82411 0.85622 0.98568 1.21856 1.17006 1.04802 0.91422 1.18160 0.76964 0.82035 0.87915 1.90878 1.48742 1.26929 1.75966 0.91974 0.91181 0.88318 0.89805 0.86234 0.76698 0.96025 0.94286 0.79209 0.94051 0.74966 0.73239 0.78079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.91 9.84 127.77 1.26 2.17 16 2 N -0.59 -10.37 2.84 -851.34 -2.41 -12.78 16 3 C 0.10 1.86 5.07 86.38 0.44 2.30 16 4 C 0.11 2.91 3.30 30.60 0.10 3.02 16 5 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 6 O -0.56 -14.24 12.64 -148.98 -1.88 -16.12 16 7 C 0.12 4.35 5.92 86.38 0.51 4.86 16 8 N -0.74 -36.29 5.49 -343.45 -1.89 -38.18 16 9 C -0.25 -13.49 9.99 84.03 0.84 -12.65 16 10 H 0.08 3.93 7.83 -2.91 -0.02 3.90 16 11 C -0.08 -4.26 5.50 84.86 0.47 -3.79 16 12 N -0.97 -58.36 13.06 21.65 0.28 -58.08 16 13 Si 0.97 45.21 29.55 68.60 2.03 47.24 16 14 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 15 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 16 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 17 C 0.60 13.62 7.51 86.49 0.65 14.26 16 18 O -0.57 -18.24 16.74 -4.27 -0.07 -18.31 16 19 C -0.30 -6.12 4.06 -20.02 -0.08 -6.21 16 20 C 0.15 2.86 11.99 85.66 1.03 3.89 16 21 N -0.31 -7.95 12.54 -56.31 -0.71 -8.65 16 22 N -0.37 -8.83 3.79 -315.77 -1.20 -10.02 16 23 C 0.35 6.47 7.89 132.61 1.05 7.52 16 24 N -0.59 -6.08 5.39 -191.03 -1.03 -7.11 16 25 H 0.45 3.65 8.93 -92.70 -0.83 2.83 16 26 C 0.23 1.09 11.25 83.30 0.94 2.02 16 27 C -0.32 -3.87 9.95 22.26 0.22 -3.65 16 28 C 0.55 13.36 7.70 84.91 0.65 14.01 16 29 O -0.55 -18.35 17.90 -4.74 -0.08 -18.43 16 30 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 31 H 0.07 0.77 6.99 -2.38 -0.02 0.76 16 32 H 0.10 0.70 7.84 -2.39 -0.02 0.68 16 33 H 0.08 1.91 7.49 -2.39 -0.02 1.90 16 34 H 0.12 1.53 7.86 -2.39 -0.02 1.51 16 35 H 0.38 7.16 9.05 -74.06 -0.67 6.49 16 36 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.38 20.03 7.54 -92.71 -0.70 19.33 16 39 H 0.25 14.68 8.31 -92.70 -0.77 13.91 16 40 H 0.23 2.77 8.06 -2.91 -0.02 2.74 16 41 H 0.25 -1.72 8.06 -2.91 -0.02 -1.75 16 42 H 0.20 1.42 8.06 -2.91 -0.02 1.40 16 Total: -1.00 -90.54 369.79 0.01 -90.52 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: -1.09 Total: 22.17 kcal Atomic # 6 Polarization: 19.69 SS G_CDS: 8.07 Total: 27.75 kcal Atomic # 7 Polarization: -127.87 SS G_CDS: -6.95 Total: -134.82 kcal Atomic # 8 Polarization: -50.82 SS G_CDS: -2.04 Total: -52.86 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -90.54 0.01 -90.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755791804.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.968 kcal (2) G-P(sol) polarization free energy of solvation -90.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds