Wall clock time and date at job start Tue Mar 31 2020 18:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46500 * 120.00097 * 2 1 4 4 C 1.53001 * 109.46760 * 269.99814 * 3 2 1 5 5 H 1.09006 * 109.46941 * 304.99679 * 4 3 2 6 6 O 1.42901 * 109.47440 * 64.99738 * 4 3 2 7 7 C 1.53003 * 109.47143 * 185.00053 * 4 3 2 8 8 N 1.46499 * 109.47095 * 179.97438 * 7 4 3 9 9 C 1.36941 * 120.00046 * 179.97438 * 8 7 4 10 10 H 1.07998 * 119.99506 * 0.02562 * 9 8 7 11 11 C 1.38804 * 120.00057 * 179.97438 * 9 8 7 12 12 N 1.31624 * 120.00223 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00176 * 180.02562 * 11 9 8 14 14 H 1.48507 * 109.47115 * 59.99994 * 13 11 9 15 15 H 1.48496 * 109.47398 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.46764 * 300.00297 * 13 11 9 17 17 C 1.34780 * 119.99986 * 179.97438 * 2 1 3 18 18 O 1.21677 * 119.99860 * 175.73584 * 17 2 1 19 19 C 1.46893 * 119.99982 * 355.74032 * 17 2 1 20 20 C 1.36390 * 126.76604 * 35.26126 * 19 17 2 21 21 N 1.35447 * 109.77428 * 180.02562 * 20 19 17 22 22 H 0.97005 * 124.79209 * 180.02562 * 21 20 19 23 23 C 1.38050 * 110.41643 * 0.02562 * 21 20 19 24 24 C 1.39110 * 133.15655 * 180.02562 * 23 21 20 25 25 C 1.37765 * 119.96554 * 179.22826 * 24 23 21 26 26 C 1.38947 * 120.60102 * 0.65344 * 25 24 23 27 27 F 1.35103 * 119.87167 * 179.56525 * 26 25 24 28 28 C 1.37945 * 120.25309 * 359.58248 * 26 25 24 29 29 C 1.39291 * 119.64870 * 359.97438 * 28 26 25 30 30 H 1.08997 * 109.46773 * 95.43640 * 1 2 3 31 31 H 1.08999 * 109.47329 * 215.44037 * 1 2 3 32 32 H 1.09004 * 109.46940 * 335.43840 * 1 2 3 33 33 H 1.08997 * 109.47354 * 149.99602 * 3 2 1 34 34 H 1.09005 * 109.47353 * 29.99451 * 3 2 1 35 35 H 0.96697 * 113.99644 * 60.00205 * 6 4 3 36 36 H 1.08996 * 109.46927 * 299.99662 * 7 4 3 37 37 H 1.08998 * 109.47316 * 59.99555 * 7 4 3 38 38 H 0.96996 * 120.00047 * 359.97438 * 8 7 4 39 39 H 0.97001 * 120.00197 * 179.97438 * 12 11 9 40 40 H 1.07998 * 125.10947 * 359.97438 * 20 19 17 41 41 H 1.08006 * 120.01977 * 359.97438 * 24 23 21 42 42 H 1.07991 * 119.69616 * 180.20947 * 25 24 23 43 43 H 1.08008 * 120.17894 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 -1.4425 5 1 2.9643 0.9129 -1.9815 6 8 1.2061 1.9934 -2.0815 7 6 3.3239 2.9680 -1.4445 8 7 3.5685 3.3904 -2.8257 9 6 4.3288 4.5012 -3.0776 10 1 4.7483 5.0655 -2.2579 11 6 4.5611 4.9012 -4.3863 12 7 4.0502 4.2131 -5.3853 13 14 5.5987 6.4160 -4.7299 14 1 6.9593 6.2221 -4.1672 15 1 5.6947 6.6281 -6.1964 16 1 4.9666 7.6024 -4.0989 17 6 2.1389 -1.1672 0.0005 18 8 3.3532 -1.1687 -0.0778 19 6 1.4075 -2.4376 0.0956 20 6 0.1889 -2.7205 -0.4477 21 7 -0.1622 -3.9938 -0.1474 22 1 -0.9876 -4.4207 -0.4257 23 6 0.8206 -4.5983 0.6105 24 6 0.9487 -5.8676 1.1652 25 6 2.0808 -6.1960 1.8782 26 6 3.0957 -5.2650 2.0621 27 9 4.1957 -5.6000 2.7713 28 6 2.9842 -3.9999 1.5237 29 6 1.8481 -3.6596 0.7931 30 1 -0.3633 -0.0974 -1.0230 31 1 -0.3634 -0.8372 0.5959 32 1 -0.3633 0.9347 0.4272 33 1 3.1499 1.1384 0.5139 34 1 1.6084 2.0285 0.5138 35 1 0.6956 2.6948 -1.6545 36 1 2.8121 3.7653 -0.9056 37 1 4.2746 2.7521 -0.9571 38 1 3.1921 2.8833 -3.5619 39 1 4.2122 4.4928 -6.2999 40 1 -0.4069 -2.0325 -1.0290 41 1 0.1663 -6.5992 1.0268 42 1 2.1772 -7.1837 2.3040 43 1 3.7741 -3.2772 1.6670 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755796182.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:10 Heat of formation + Delta-G solvation = -46.966389 kcal Electronic energy + Delta-G solvation = -28029.403454 eV Core-core repulsion = 23797.452799 eV Total energy + Delta-G solvation = -4231.950655 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.99398 -41.87114 -39.59869 -37.34500 -37.08498 -35.14992 -33.95414 -32.53968 -31.33013 -30.15871 -29.48364 -28.80116 -26.91265 -25.55497 -23.60009 -23.15070 -22.29775 -21.91739 -21.12972 -19.39435 -18.28567 -17.57550 -17.11657 -17.03746 -16.42811 -16.26110 -16.03414 -15.73070 -15.56871 -14.98512 -14.82420 -14.64121 -14.39230 -14.22156 -13.72888 -13.47345 -13.44843 -13.43001 -13.01159 -12.90987 -12.75234 -12.40756 -12.39773 -11.98729 -11.69321 -11.45954 -11.33157 -10.89763 -10.76692 -10.62321 -10.23779 -10.15680 -9.94648 -9.74280 -9.61095 -8.84159 -8.60770 -8.49128 -8.13994 -6.86542 -5.69789 -2.99034 0.53200 1.00219 1.74469 2.52268 2.91285 3.08082 3.43284 3.47791 3.51743 3.53239 3.95607 4.21182 4.39660 4.42477 4.61080 4.66916 4.80341 4.90355 4.92654 4.96336 5.07992 5.16481 5.28949 5.30503 5.36272 5.53905 5.59447 5.61030 5.73981 5.80579 5.84289 5.87753 6.05703 6.14461 6.16960 6.29936 6.51273 6.60540 6.63932 6.81419 6.92342 7.36004 7.73004 8.06933 8.23664 8.48618 9.59763 10.18364 10.54244 11.52629 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.020072 B = 0.002212 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.647355 B =12655.937824 C =13359.806521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.604 5.604 3 C 0.090 3.910 4 C 0.086 3.914 5 H 0.102 0.898 6 O -0.551 6.551 7 C 0.126 3.874 8 N -0.725 5.725 9 C -0.242 4.242 10 H 0.069 0.931 11 C -0.014 4.014 12 N -0.931 5.931 13 Si 0.908 3.092 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 C 0.585 3.415 18 O -0.532 6.532 19 C -0.218 4.218 20 C 0.110 3.890 21 N -0.578 5.578 22 H 0.422 0.578 23 C 0.076 3.924 24 C -0.095 4.095 25 C -0.133 4.133 26 C 0.078 3.922 27 F -0.140 7.140 28 C -0.099 4.099 29 C -0.039 4.039 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.366 0.634 36 H 0.019 0.981 37 H 0.027 0.973 38 H 0.389 0.611 39 H 0.255 0.745 40 H 0.188 0.812 41 H 0.133 0.867 42 H 0.140 0.860 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.496 -20.992 16.652 30.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.336 5.336 3 C -0.033 4.033 4 C 0.026 3.974 5 H 0.119 0.881 6 O -0.355 6.355 7 C -0.003 4.003 8 N -0.370 5.370 9 C -0.373 4.373 10 H 0.087 0.913 11 C -0.210 4.210 12 N -0.579 5.579 13 Si 0.739 3.261 14 H -0.213 1.213 15 H -0.217 1.217 16 H -0.213 1.213 17 C 0.374 3.626 18 O -0.408 6.408 19 C -0.228 4.228 20 C -0.022 4.022 21 N -0.180 5.180 22 H 0.260 0.740 23 C -0.030 4.030 24 C -0.115 4.115 25 C -0.153 4.153 26 C 0.057 3.943 27 F -0.119 7.119 28 C -0.119 4.119 29 C -0.044 4.044 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.111 0.889 34 H 0.099 0.901 35 H 0.212 0.788 36 H 0.037 0.963 37 H 0.045 0.955 38 H 0.223 0.777 39 H 0.065 0.935 40 H 0.205 0.795 41 H 0.151 0.849 42 H 0.158 0.842 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -14.604 -21.380 16.213 30.549 hybrid contribution 0.032 0.960 -0.201 0.981 sum -14.573 -20.420 16.012 29.761 Atomic orbital electron populations 1.22037 0.79852 1.03094 1.01760 1.47541 1.06854 1.05637 1.73603 1.22258 0.98362 0.84197 0.98532 1.22557 0.85080 0.98142 0.91660 0.88063 1.86605 1.32391 1.58974 1.57519 1.21219 0.96422 0.92931 0.89686 1.42233 1.61781 1.32159 1.00822 1.19182 1.23692 1.02622 0.91788 0.91326 1.24759 1.01226 0.99418 0.95591 1.69677 1.49171 1.40845 0.98228 0.86257 0.80216 0.82779 0.76853 1.21255 1.21692 1.21315 1.17245 0.86681 0.82366 0.76304 1.90837 1.13475 1.87030 1.49501 1.19955 0.96967 0.94945 1.10984 1.22490 0.95530 0.85721 0.98468 1.41541 1.19254 1.11642 1.45516 0.73998 1.18225 0.90350 0.94942 0.99435 1.19824 0.98707 0.93289 0.99714 1.20773 0.93056 0.99817 1.01648 1.17346 0.85155 0.94079 0.97674 1.91500 1.51393 1.92770 1.76189 1.20530 0.98222 0.95502 0.97610 1.18405 0.93889 0.92340 0.99795 0.91931 0.91287 0.90848 0.88862 0.90115 0.78822 0.96333 0.95498 0.77679 0.93492 0.79518 0.84925 0.84244 0.83953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.58 8.63 59.85 0.52 1.09 16 2 N -0.60 -7.25 2.84 -183.04 -0.52 -7.76 16 3 C 0.09 1.18 5.07 -4.04 -0.02 1.16 16 4 C 0.09 1.45 3.30 -26.73 -0.09 1.37 16 5 H 0.10 2.04 8.14 -51.93 -0.42 1.62 16 6 O -0.55 -8.95 12.64 -35.23 -0.45 -9.40 16 7 C 0.13 2.58 5.92 -4.04 -0.02 2.56 16 8 N -0.73 -19.23 5.49 -59.91 -0.33 -19.56 16 9 C -0.24 -7.00 9.99 -15.06 -0.15 -7.15 16 10 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 11 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 12 N -0.93 -29.20 13.06 55.49 0.72 -28.48 16 13 Si 0.91 22.97 29.55 -169.99 -5.02 17.95 16 14 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 15 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 16 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 17 C 0.59 8.47 7.60 -12.76 -0.10 8.38 16 18 O -0.53 -9.94 16.71 5.21 0.09 -9.85 16 19 C -0.22 -2.53 5.59 -103.31 -0.58 -3.11 16 20 C 0.11 0.82 9.55 -16.62 -0.16 0.66 16 21 N -0.58 -3.40 5.99 -10.47 -0.06 -3.46 16 22 H 0.42 0.90 8.96 -40.82 -0.37 0.53 16 23 C 0.08 0.65 7.26 -83.94 -0.61 0.04 16 24 C -0.09 -0.66 10.07 -39.43 -0.40 -1.06 16 25 C -0.13 -1.07 9.99 -39.49 -0.39 -1.47 16 26 C 0.08 0.84 7.29 -39.43 -0.29 0.55 16 27 F -0.14 -1.63 17.26 2.25 0.04 -1.59 16 28 C -0.10 -1.22 10.07 -39.30 -0.40 -1.61 16 29 C -0.04 -0.46 6.34 -104.95 -0.67 -1.13 16 30 H 0.06 0.45 7.28 -51.93 -0.38 0.07 16 31 H 0.07 0.41 5.84 -51.93 -0.30 0.11 16 32 H 0.07 0.46 7.83 -51.93 -0.41 0.05 16 33 H 0.09 1.35 7.48 -51.93 -0.39 0.96 16 34 H 0.08 0.83 7.86 -51.93 -0.41 0.42 16 35 H 0.37 4.66 9.04 45.56 0.41 5.07 16 36 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.39 11.11 7.54 -40.82 -0.31 10.80 16 39 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 40 H 0.19 0.87 5.99 -52.49 -0.31 0.56 16 41 H 0.13 0.50 8.06 -52.48 -0.42 0.08 16 42 H 0.14 0.79 8.06 -52.49 -0.42 0.36 16 43 H 0.14 1.89 8.06 -52.48 -0.42 1.47 16 LS Contribution 369.61 15.07 5.57 5.57 Total: -1.00 -38.18 369.61 -7.95 -46.13 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -4.54 Total: 10.69 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -3.44 Total: -0.23 kcal Atomic # 7 Polarization: -59.08 SS G_CDS: -0.19 Total: -59.26 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: -0.36 Total: -19.25 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.04 Total: -1.59 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -5.02 Total: 17.95 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -38.18 -7.95 -46.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755796182.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.840 kcal (2) G-P(sol) polarization free energy of solvation -38.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds