Wall clock time and date at job start Tue Mar 31 2020 18:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 120.00052 * 2 1 4 4 H 1.48498 * 109.47408 * 239.99551 * 3 2 1 5 5 H 1.48504 * 109.47347 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47016 * 119.99735 * 3 2 1 7 7 C 1.37879 * 119.99914 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99819 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99848 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46595 * 180.02562 * 9 7 2 11 11 C 1.53044 * 109.45510 * 185.00112 * 10 9 7 12 12 C 1.53188 * 109.31186 * 178.61653 * 11 10 9 13 13 N 1.46927 * 108.77787 * 54.63341 * 12 11 10 14 14 C 1.34778 * 120.63332 * 126.37160 * 13 12 11 15 15 O 1.21566 * 119.99938 * 354.17765 * 14 13 12 16 16 C 1.47719 * 119.99807 * 174.17906 * 14 13 12 17 17 C 1.39324 * 120.10763 * 306.22670 * 16 14 13 18 18 C 1.39108 * 119.75519 * 179.82039 * 17 16 14 19 Xx 1.56995 * 120.01563 * 180.20849 * 18 17 16 20 19 O 1.42001 * 120.00501 * 180.22620 * 19 18 17 21 20 O 1.41996 * 119.99969 * 0.23206 * 19 18 17 22 21 C 1.39663 * 119.97313 * 0.43706 * 18 17 16 23 22 C 1.37851 * 120.21410 * 359.79211 * 22 18 17 24 23 C 1.38528 * 120.24648 * 0.02562 * 23 22 18 25 24 F 1.35099 * 119.98707 * 179.97438 * 24 23 22 26 25 C 1.46929 * 118.73441 * 306.64222 * 13 12 11 27 26 C 1.52757 * 109.00824 * 53.31549 * 26 13 12 28 27 H 0.96999 * 120.00317 * 0.02562 * 1 2 3 29 28 H 1.08996 * 109.47323 * 60.00194 * 9 7 2 30 29 H 1.09003 * 109.46731 * 299.99702 * 9 7 2 31 30 H 1.08997 * 109.45244 * 304.96030 * 10 9 7 32 31 H 1.08997 * 109.50082 * 58.66065 * 11 10 9 33 32 H 1.09004 * 109.49740 * 298.56492 * 11 10 9 34 33 H 1.09004 * 109.58835 * 294.84895 * 12 11 10 35 34 H 1.09001 * 109.70856 * 174.48886 * 12 11 10 36 35 H 1.07991 * 120.12177 * 0.02562 * 17 16 14 37 36 H 0.96698 * 114.00424 * 180.02562 * 20 19 18 38 37 H 0.96700 * 114.00643 * 179.97438 * 21 19 18 39 38 H 1.07995 * 119.89292 * 179.76649 * 22 18 17 40 39 H 1.08001 * 119.87555 * 179.97438 * 23 22 18 41 40 H 1.09011 * 109.58442 * 173.14579 * 26 13 12 42 41 H 1.08993 * 109.59261 * 293.56622 * 26 13 12 43 42 H 1.09002 * 109.56588 * 185.55388 * 27 26 13 44 43 H 1.09000 * 109.36359 * 65.49560 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 6 1.4841 -4.9838 -0.1240 12 6 2.4845 -6.1434 -0.1571 13 7 3.3496 -6.0557 1.0272 14 6 3.4902 -7.1103 1.8546 15 8 2.8186 -8.1094 1.6854 16 6 4.4602 -7.0520 2.9672 17 6 5.7922 -6.7290 2.7168 18 6 6.6986 -6.6726 3.7705 19 8 9.1261 -6.2516 4.5711 20 8 8.6318 -6.0243 2.1727 21 6 6.2737 -6.9481 5.0721 22 6 4.9565 -7.2721 5.3178 23 6 4.0454 -7.3273 4.2757 24 9 2.7559 -7.6459 4.5224 25 6 4.0540 -4.7945 1.2955 26 6 3.0403 -3.6518 1.3095 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6240 -2.5566 0.8904 30 1 2.9295 -3.5556 -0.8400 31 1 0.8997 -4.9810 -1.0441 32 1 0.8177 -5.1025 0.7304 33 1 3.0923 -6.0760 -1.0594 34 1 1.9479 -7.0922 -0.1481 35 1 6.1190 -6.5201 1.7090 36 1 10.0254 -6.0164 4.3045 37 1 9.5716 -5.8078 2.1030 38 1 6.9793 -6.9075 5.8886 39 1 4.6339 -7.4846 6.3263 40 1 4.5507 -4.8523 2.2642 41 1 4.7923 -4.6148 0.5142 42 1 3.5636 -2.7008 1.4096 43 1 2.3593 -3.7830 2.1504 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585001498.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:25 Heat of formation + Delta-G solvation = 32.860732 kcal Electronic energy + Delta-G solvation = -27312.530175 eV Core-core repulsion = 23166.318734 eV Total energy + Delta-G solvation = -4146.211441 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 324.144 amu Computer time = 2.62 seconds Orbital eigenvalues (eV) -48.68468 -40.41279 -38.43347 -37.57535 -36.25699 -34.00770 -31.95437 -30.70179 -30.01594 -29.40065 -28.91764 -28.50091 -26.67252 -24.19623 -23.50779 -22.59148 -21.87934 -20.58310 -19.31181 -18.98612 -17.43503 -17.05940 -16.79776 -16.23275 -15.88070 -15.32982 -14.94465 -14.86751 -14.79417 -14.26531 -14.19048 -13.73528 -13.60987 -13.53904 -13.31427 -13.07580 -12.85795 -12.77122 -12.54251 -12.30702 -12.08081 -11.85777 -11.64798 -11.63905 -11.39089 -11.12568 -11.07012 -11.01646 -10.90203 -10.62316 -10.57225 -9.84590 -9.19724 -8.90497 -8.65718 -8.31968 -7.12722 -7.05865 -6.71781 -5.73164 -4.02747 0.00349 1.08264 1.47873 1.75227 1.79109 1.99290 2.47712 2.58964 2.73415 2.98345 3.89556 4.35057 4.40531 4.46971 4.55229 4.57357 4.65913 4.96625 4.97182 5.08405 5.18112 5.24531 5.33040 5.34411 5.39228 5.47173 5.49959 5.66848 5.71792 5.77046 5.80191 5.82168 5.91444 5.94607 5.99340 5.99638 6.10198 6.24635 6.26518 6.36965 6.51537 6.87783 7.10202 7.33865 7.62757 8.16215 10.03406 10.17136 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.011419 B = 0.003364 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2451.501056 B = 8322.307298 C = 9516.482634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.071 4.071 3 Si 0.947 3.053 4 H -0.244 1.244 5 H -0.254 1.254 6 H -0.242 1.242 7 C -0.088 4.088 8 H 0.132 0.868 9 C -0.077 4.077 10 C -0.094 4.094 11 C -0.127 4.127 12 C 0.111 3.889 13 N -0.604 5.604 14 C 0.577 3.423 15 O -0.529 6.529 16 C -0.156 4.156 17 C -0.071 4.071 18 C 0.203 3.797 19 O -0.878 6.878 20 O -0.877 6.877 21 C -0.078 4.078 22 C -0.143 4.143 23 C 0.110 3.890 24 F -0.130 7.130 25 C 0.099 3.901 26 C -0.131 4.131 27 H 0.330 0.670 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.156 0.844 36 H 0.271 0.729 37 H 0.271 0.729 38 H 0.157 0.843 39 H 0.151 0.849 40 H 0.093 0.907 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.049 11.546 -7.192 23.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.263 5.263 2 C -0.283 4.283 3 Si 0.764 3.236 4 H -0.167 1.167 5 H -0.177 1.177 6 H -0.165 1.165 7 C -0.106 4.106 8 H 0.150 0.850 9 C -0.113 4.113 10 C -0.112 4.112 11 C -0.165 4.165 12 C -0.011 4.011 13 N -0.337 5.337 14 C 0.365 3.635 15 O -0.405 6.405 16 C -0.160 4.160 17 C -0.090 4.090 18 C 0.181 3.819 19 O -0.695 6.695 20 O -0.694 6.694 21 C -0.096 4.096 22 C -0.162 4.162 23 C 0.090 3.910 24 F -0.108 7.108 25 C -0.023 4.023 26 C -0.170 4.170 27 H 0.143 0.857 28 H 0.111 0.889 29 H 0.110 0.890 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.112 0.888 35 H 0.173 0.827 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.175 0.825 39 H 0.168 0.832 40 H 0.112 0.888 41 H 0.095 0.905 42 H 0.099 0.901 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -20.867 10.689 -7.046 24.481 hybrid contribution 1.595 1.039 -0.190 1.914 sum -19.272 11.728 -7.236 23.692 Atomic orbital electron populations 1.69912 1.08246 1.35740 1.12356 1.26777 0.96659 1.05275 0.99590 0.85474 0.80254 0.75275 0.82562 1.16702 1.17720 1.16494 1.25505 0.99591 0.93429 0.92098 0.85030 1.20750 0.97479 0.90397 1.02697 1.21312 0.97152 0.94306 0.98461 1.21947 0.97876 0.93842 1.02854 1.21618 0.92395 1.00140 0.86927 1.47953 1.47160 1.12770 1.25840 1.17975 0.81517 0.82857 0.81193 1.90772 1.45900 1.31629 1.72248 1.19689 0.93826 1.09633 0.92894 1.21250 0.87671 0.97407 1.02640 1.30654 0.73255 0.89425 0.88584 1.93496 1.20954 1.94933 1.60134 1.93487 1.20464 1.94946 1.60512 1.21387 0.93622 0.96227 0.98349 1.20965 0.91365 1.04835 0.98991 1.17589 0.79334 1.01720 0.92356 1.91507 1.34343 1.90178 1.94809 1.21874 0.94415 0.82391 1.03666 1.21993 0.98420 0.98601 0.97944 0.85742 0.88926 0.88960 0.90341 0.90519 0.91254 0.91211 0.88832 0.82652 0.89922 0.89899 0.82504 0.83186 0.88844 0.90459 0.90120 0.91234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 50. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.61 -5.30 13.29 55.43 0.74 -4.56 16 2 C -0.07 -0.54 5.46 -17.82 -0.10 -0.64 16 3 Si 0.95 6.23 29.54 -169.99 -5.02 1.21 16 4 H -0.24 -1.75 7.11 56.52 0.40 -1.34 16 5 H -0.25 -1.77 7.11 56.52 0.40 -1.37 16 6 H -0.24 -1.84 7.11 56.52 0.40 -1.44 16 7 C -0.09 -0.63 8.39 -34.44 -0.29 -0.92 16 8 H 0.13 0.74 7.06 -52.49 -0.37 0.37 16 9 C -0.08 -0.58 4.45 -27.88 -0.12 -0.70 16 10 C -0.09 -0.75 2.10 -90.57 -0.19 -0.94 16 11 C -0.13 -1.12 5.36 -26.61 -0.14 -1.26 16 12 C 0.11 1.27 6.44 -3.71 -0.02 1.24 16 13 N -0.60 -8.58 2.98 -174.19 -0.52 -9.10 16 14 C 0.58 10.29 6.89 -12.39 -0.09 10.20 16 15 O -0.53 -10.72 16.25 5.31 0.09 -10.63 16 16 C -0.16 -2.92 4.60 -104.96 -0.48 -3.40 16 17 C -0.07 -1.52 7.48 -38.85 -0.29 -1.81 16 18 C 0.20 5.14 9.79 -38.73 -0.38 4.76 16 19 O -0.88 -31.56 17.23 -57.73 -0.99 -32.56 16 20 O -0.88 -31.23 17.23 -57.73 -0.99 -32.23 16 21 C -0.08 -1.61 9.74 -39.19 -0.38 -1.99 16 22 C -0.14 -2.37 10.00 -39.62 -0.40 -2.77 16 23 C 0.11 1.95 7.28 -38.81 -0.28 1.67 16 24 F -0.13 -2.27 16.63 2.25 0.04 -2.24 16 25 C 0.10 1.26 5.53 -3.93 -0.02 1.24 16 26 C -0.13 -1.26 5.17 -26.83 -0.14 -1.40 16 27 H 0.33 2.32 8.31 -40.82 -0.34 1.98 16 28 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.09 1.18 7.00 -51.93 -0.36 0.82 16 35 H 0.16 3.46 7.46 -52.49 -0.39 3.07 16 36 H 0.27 9.38 8.90 45.56 0.41 9.78 16 37 H 0.27 9.32 8.90 45.56 0.41 9.73 16 38 H 0.16 3.31 7.76 -52.49 -0.41 2.90 16 39 H 0.15 1.92 8.06 -52.49 -0.42 1.50 16 40 H 0.09 1.37 5.40 -51.92 -0.28 1.09 16 41 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.08 0.66 6.91 -51.93 -0.36 0.31 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 374.05 15.07 5.64 5.64 Total: -1.00 -42.86 374.05 -8.66 -51.52 By element: Atomic # 1 Polarization: 33.97 SS G_CDS: -4.30 Total: 29.67 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: -3.33 Total: 3.28 kcal Atomic # 7 Polarization: -13.88 SS G_CDS: 0.22 Total: -13.66 kcal Atomic # 8 Polarization: -73.51 SS G_CDS: -1.90 Total: -75.41 kcal Atomic # 9 Polarization: -2.27 SS G_CDS: 0.04 Total: -2.24 kcal Atomic # 14 Polarization: 6.23 SS G_CDS: -5.02 Total: 1.21 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -42.86 -8.66 -51.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585001498.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.383 kcal (2) G-P(sol) polarization free energy of solvation -42.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.62 seconds