Wall clock time and date at job start Tue Mar 31 2020 18:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 120.00052 * 2 1 4 4 H 1.48498 * 109.47408 * 239.99551 * 3 2 1 5 5 H 1.48504 * 109.47347 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47016 * 119.99735 * 3 2 1 7 7 C 1.37879 * 119.99914 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99819 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99848 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46595 * 180.02562 * 9 7 2 11 11 C 1.53044 * 109.45510 * 185.00112 * 10 9 7 12 12 C 1.53188 * 109.31186 * 178.61653 * 11 10 9 13 13 N 1.46927 * 108.77787 * 54.63341 * 12 11 10 14 14 C 1.34778 * 120.63332 * 126.37160 * 13 12 11 15 15 O 1.21566 * 119.99938 * 354.17765 * 14 13 12 16 16 C 1.47719 * 119.99807 * 174.17906 * 14 13 12 17 17 C 1.39324 * 120.10763 * 306.22670 * 16 14 13 18 18 C 1.39108 * 119.75519 * 179.82039 * 17 16 14 19 Xx 1.56995 * 120.01563 * 180.20849 * 18 17 16 20 19 O 1.42001 * 120.00501 * 180.22620 * 19 18 17 21 20 O 1.41996 * 119.99969 * 0.23206 * 19 18 17 22 21 C 1.39663 * 119.97313 * 0.43706 * 18 17 16 23 22 C 1.37851 * 120.21410 * 359.79211 * 22 18 17 24 23 C 1.38528 * 120.24648 * 0.02562 * 23 22 18 25 24 F 1.35099 * 119.98707 * 179.97438 * 24 23 22 26 25 C 1.46929 * 118.73441 * 306.64222 * 13 12 11 27 26 C 1.52757 * 109.00824 * 53.31549 * 26 13 12 28 27 H 0.96999 * 120.00317 * 0.02562 * 1 2 3 29 28 H 1.08996 * 109.47323 * 60.00194 * 9 7 2 30 29 H 1.09003 * 109.46731 * 299.99702 * 9 7 2 31 30 H 1.08997 * 109.45244 * 304.96030 * 10 9 7 32 31 H 1.08997 * 109.50082 * 58.66065 * 11 10 9 33 32 H 1.09004 * 109.49740 * 298.56492 * 11 10 9 34 33 H 1.09004 * 109.58835 * 294.84895 * 12 11 10 35 34 H 1.09001 * 109.70856 * 174.48886 * 12 11 10 36 35 H 1.07991 * 120.12177 * 0.02562 * 17 16 14 37 36 H 0.96698 * 114.00424 * 180.02562 * 20 19 18 38 37 H 0.96700 * 114.00643 * 179.97438 * 21 19 18 39 38 H 1.07995 * 119.89292 * 179.76649 * 22 18 17 40 39 H 1.08001 * 119.87555 * 179.97438 * 23 22 18 41 40 H 1.09011 * 109.58442 * 173.14579 * 26 13 12 42 41 H 1.08993 * 109.59261 * 293.56622 * 26 13 12 43 42 H 1.09002 * 109.56588 * 185.55388 * 27 26 13 44 43 H 1.09000 * 109.36359 * 65.49560 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 6 1.4841 -4.9838 -0.1240 12 6 2.4845 -6.1434 -0.1571 13 7 3.3496 -6.0557 1.0272 14 6 3.4902 -7.1103 1.8546 15 8 2.8186 -8.1094 1.6854 16 6 4.4602 -7.0520 2.9672 17 6 5.7922 -6.7290 2.7168 18 6 6.6986 -6.6726 3.7705 19 8 9.1261 -6.2516 4.5711 20 8 8.6318 -6.0243 2.1727 21 6 6.2737 -6.9481 5.0721 22 6 4.9565 -7.2721 5.3178 23 6 4.0454 -7.3273 4.2757 24 9 2.7559 -7.6459 4.5224 25 6 4.0540 -4.7945 1.2955 26 6 3.0403 -3.6518 1.3095 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6240 -2.5566 0.8904 30 1 2.9295 -3.5556 -0.8400 31 1 0.8997 -4.9810 -1.0441 32 1 0.8177 -5.1025 0.7304 33 1 3.0923 -6.0760 -1.0594 34 1 1.9479 -7.0922 -0.1481 35 1 6.1190 -6.5201 1.7090 36 1 10.0254 -6.0164 4.3045 37 1 9.5716 -5.8078 2.1030 38 1 6.9793 -6.9075 5.8886 39 1 4.6339 -7.4846 6.3263 40 1 4.5507 -4.8523 2.2642 41 1 4.7923 -4.6148 0.5142 42 1 3.5636 -2.7008 1.4096 43 1 2.3593 -3.7830 2.1504 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000585001498.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:24 Heat of formation + Delta-G solvation = -5.805842 kcal Electronic energy + Delta-G solvation = -27314.206883 eV Core-core repulsion = 23166.318734 eV Total energy + Delta-G solvation = -4147.888149 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 324.144 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.35922 -41.83962 -40.01827 -38.97768 -37.03065 -35.00574 -33.41799 -31.95460 -31.53054 -31.10812 -30.81733 -30.66819 -27.57650 -25.61666 -24.52405 -24.02043 -23.43712 -21.64224 -20.37540 -19.75245 -19.02112 -18.52253 -17.95063 -17.47664 -17.39185 -16.88954 -16.19353 -15.68851 -15.59176 -15.50910 -15.42294 -15.07302 -14.96224 -14.79863 -14.46909 -14.38855 -13.97869 -13.92587 -13.83723 -13.60848 -13.42276 -13.24989 -13.07012 -12.94916 -12.73985 -12.21917 -12.20187 -11.74450 -11.65827 -11.40862 -11.37127 -11.25206 -10.72328 -10.42940 -9.86104 -9.75529 -9.31782 -9.26398 -9.24508 -8.39206 -4.60057 -2.17877 -0.85253 -0.57696 1.16871 1.22314 1.24627 1.47806 1.62389 1.86364 1.93345 2.04350 2.51091 2.84370 3.06261 3.25636 3.37046 3.71083 3.77120 3.80287 3.93497 4.05957 4.09993 4.22586 4.27674 4.30843 4.36932 4.43766 4.47676 4.57417 4.69172 4.78846 4.79252 4.87724 4.92018 5.00184 5.02296 5.09076 5.10141 5.17180 5.38688 5.44005 5.49682 5.58786 6.02796 6.73033 7.08575 7.59851 7.71510 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.011419 B = 0.003364 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2451.501056 B = 8322.307298 C = 9516.482634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.076 4.076 3 Si 0.986 3.014 4 H -0.252 1.252 5 H -0.261 1.261 6 H -0.257 1.257 7 C -0.091 4.091 8 H 0.148 0.852 9 C -0.069 4.069 10 C -0.088 4.088 11 C -0.118 4.118 12 C 0.105 3.895 13 N -0.592 5.592 14 C 0.571 3.429 15 O -0.547 6.547 16 C -0.132 4.132 17 C -0.055 4.055 18 C 0.276 3.724 19 O -1.052 7.052 20 O -1.046 7.046 21 C -0.061 4.061 22 C -0.077 4.077 23 C 0.156 3.844 24 F -0.103 7.103 25 C 0.090 3.910 26 C -0.126 4.126 27 H 0.335 0.665 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.156 0.844 36 H 0.243 0.757 37 H 0.244 0.756 38 H 0.173 0.827 39 H 0.231 0.769 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.096 0.904 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.112 10.623 -5.920 29.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.284 5.284 2 C -0.287 4.287 3 Si 0.805 3.195 4 H -0.176 1.176 5 H -0.184 1.184 6 H -0.181 1.181 7 C -0.110 4.110 8 H 0.165 0.835 9 C -0.105 4.105 10 C -0.106 4.106 11 C -0.156 4.156 12 C -0.016 4.016 13 N -0.324 5.324 14 C 0.358 3.642 15 O -0.426 6.426 16 C -0.137 4.137 17 C -0.073 4.073 18 C 0.263 3.737 19 O -0.872 6.872 20 O -0.866 6.866 21 C -0.079 4.079 22 C -0.095 4.095 23 C 0.135 3.865 24 F -0.081 7.081 25 C -0.032 4.032 26 C -0.164 4.164 27 H 0.149 0.851 28 H 0.115 0.885 29 H 0.105 0.895 30 H 0.107 0.893 31 H 0.119 0.881 32 H 0.082 0.918 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.173 0.827 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.190 0.810 39 H 0.247 0.753 40 H 0.091 0.909 41 H 0.098 0.902 42 H 0.114 0.886 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -29.074 9.765 -5.780 31.210 hybrid contribution 2.923 1.088 -0.463 3.153 sum -26.151 10.853 -6.243 28.994 Atomic orbital electron populations 1.69910 1.08789 1.36459 1.13239 1.26953 0.96563 1.05934 0.99280 0.84893 0.79046 0.74333 0.81217 1.17563 1.18426 1.18110 1.25748 1.00485 0.93224 0.91516 0.83462 1.20643 0.97133 0.90067 1.02645 1.21273 0.97192 0.94263 0.97874 1.21907 0.97111 0.92710 1.03915 1.21924 0.92708 1.01032 0.85956 1.48120 1.46484 1.12169 1.25578 1.17681 0.81458 0.83640 0.81430 1.90803 1.46748 1.32451 1.72621 1.19637 0.90705 1.08109 0.95213 1.21047 0.87906 0.96887 1.01484 1.28351 0.50321 1.01781 0.93254 1.93359 1.22167 1.94781 1.76879 1.93354 1.17702 1.95286 1.80280 1.21646 0.96129 0.95040 0.95094 1.21371 0.86034 1.00040 1.02073 1.17746 0.80255 0.96997 0.91457 1.91624 1.32805 1.89162 1.94479 1.22048 0.95526 0.82967 1.02639 1.21985 0.97728 0.97697 0.98984 0.85122 0.88494 0.89544 0.89271 0.88148 0.91783 0.89607 0.89689 0.82665 0.93005 0.92886 0.81021 0.75261 0.90885 0.90156 0.88559 0.91189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.64 -9.45 13.29 21.45 0.28 -9.17 16 2 C -0.08 -0.96 5.46 84.65 0.46 -0.50 16 3 Si 0.99 11.24 29.54 68.60 2.03 13.27 16 4 H -0.25 -3.19 7.11 99.48 0.71 -2.49 16 5 H -0.26 -3.22 7.11 99.48 0.71 -2.51 16 6 H -0.26 -3.55 7.11 99.48 0.71 -2.85 16 7 C -0.09 -1.02 8.39 25.60 0.21 -0.80 16 8 H 0.15 1.13 7.06 -2.91 -0.02 1.11 16 9 C -0.07 -0.76 4.45 29.85 0.13 -0.62 16 10 C -0.09 -1.01 2.10 -10.76 -0.02 -1.03 16 11 C -0.12 -1.50 5.36 30.67 0.16 -1.33 16 12 C 0.10 1.91 6.44 86.36 0.56 2.47 16 13 N -0.59 -14.20 2.98 -823.28 -2.45 -16.65 16 14 C 0.57 17.23 6.89 86.75 0.60 17.82 16 15 O -0.55 -19.00 16.25 -3.92 -0.06 -19.07 16 16 C -0.13 -4.11 4.60 -20.08 -0.09 -4.20 16 17 C -0.05 -2.20 7.48 22.74 0.17 -2.03 16 18 C 0.28 13.73 9.79 22.82 0.22 13.95 16 19 O -1.05 -87.71 17.23 -127.47 -2.20 -89.90 16 20 O -1.05 -87.07 17.23 -127.47 -2.20 -89.27 16 21 C -0.06 -2.19 9.74 22.52 0.22 -1.97 16 22 C -0.08 -1.74 10.00 22.25 0.22 -1.52 16 23 C 0.16 3.99 7.28 22.77 0.17 4.15 16 24 F -0.10 -2.48 16.63 44.97 0.75 -1.73 16 25 C 0.09 1.98 5.53 86.22 0.48 2.46 16 26 C -0.13 -1.88 5.17 30.53 0.16 -1.73 16 27 H 0.34 4.09 8.31 -92.71 -0.77 3.32 16 28 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.10 0.88 8.14 -2.39 -0.02 0.87 16 32 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 33 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 34 H 0.08 1.78 7.00 -2.39 -0.02 1.76 16 35 H 0.16 6.89 7.46 -2.92 -0.02 6.87 16 36 H 0.24 20.60 8.90 -74.06 -0.66 19.94 16 37 H 0.24 20.62 8.90 -74.06 -0.66 19.96 16 38 H 0.17 6.55 7.76 -2.91 -0.02 6.52 16 39 H 0.23 2.53 8.06 -2.91 -0.02 2.51 16 40 H 0.07 1.88 5.40 -2.38 -0.01 1.86 16 41 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.10 1.20 6.91 -2.39 -0.02 1.18 16 43 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -120.75 374.05 -0.46 -121.21 By element: Atomic # 1 Polarization: 66.45 SS G_CDS: -0.26 Total: 66.19 kcal Atomic # 6 Polarization: 21.47 SS G_CDS: 3.65 Total: 25.12 kcal Atomic # 7 Polarization: -23.65 SS G_CDS: -2.17 Total: -25.82 kcal Atomic # 8 Polarization: -193.79 SS G_CDS: -4.46 Total: -198.24 kcal Atomic # 9 Polarization: -2.48 SS G_CDS: 0.75 Total: -1.73 kcal Atomic # 14 Polarization: 11.24 SS G_CDS: 2.03 Total: 13.27 kcal Total: -120.75 -0.46 -121.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585001498.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.400 kcal (2) G-P(sol) polarization free energy of solvation -120.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -121.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds