Wall clock time and date at job start Tue Mar 31 2020 18:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38286 * 119.97163 * 2 1 4 4 C 1.38246 * 120.10838 * 179.72962 * 3 2 1 5 5 C 1.38164 * 120.05483 * 0.54869 * 4 3 2 6 6 C 1.38704 * 119.94394 * 359.72272 * 5 4 3 7 7 O 1.35908 * 120.05440 * 179.97438 * 6 5 4 8 8 C 1.42903 * 117.00023 * 0.02562 * 7 6 5 9 9 C 1.52994 * 109.47313 * 179.97438 * 8 7 6 10 10 C 1.52992 * 109.47240 * 180.02562 * 9 8 7 11 11 C 1.53003 * 109.47094 * 180.02562 * 10 9 8 12 12 C 1.50698 * 109.46866 * 180.02562 * 11 10 9 13 13 O 1.20829 * 120.00619 * 359.97438 * 12 11 10 14 14 O 1.34232 * 119.99804 * 180.02562 * 12 11 10 15 15 C 1.45206 * 117.00127 * 179.97438 * 14 12 11 16 16 C 1.50697 * 109.47173 * 179.97438 * 15 14 12 17 17 O 1.21294 * 120.00092 * 0.02562 * 16 15 14 18 18 N 1.34774 * 120.00132 * 179.97438 * 16 15 14 19 19 C 1.37095 * 120.00268 * 179.97438 * 18 16 15 20 20 H 1.08003 * 120.00105 * 0.02562 * 19 18 16 21 21 C 1.38955 * 120.00220 * 180.02562 * 19 18 16 22 22 N 1.31412 * 119.99429 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 119.99934 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47466 * 59.99895 * 23 21 19 25 25 H 1.48507 * 109.46938 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.47109 * 299.99345 * 23 21 19 27 27 C 1.38123 * 119.96761 * 180.27598 * 2 1 3 28 28 H 1.09001 * 109.46953 * 269.72253 * 1 2 3 29 29 H 1.09000 * 109.47318 * 29.71851 * 1 2 3 30 30 H 1.09000 * 109.47161 * 149.72481 * 1 2 3 31 31 H 1.08000 * 119.94258 * 359.97438 * 3 2 1 32 32 H 1.08003 * 119.97108 * 180.25440 * 4 3 2 33 33 H 1.08004 * 120.02622 * 179.75128 * 5 4 3 34 34 H 1.09000 * 109.46823 * 300.00313 * 8 7 6 35 35 H 1.09008 * 109.46511 * 59.99921 * 8 7 6 36 36 H 1.09003 * 109.47171 * 300.00390 * 9 8 7 37 37 H 1.09002 * 109.47269 * 59.99750 * 9 8 7 38 38 H 1.08998 * 109.47132 * 299.99619 * 10 9 8 39 39 H 1.08997 * 109.47536 * 60.00010 * 10 9 8 40 40 H 1.08998 * 109.46817 * 299.99808 * 11 10 9 41 41 H 1.08994 * 109.47195 * 60.00080 * 11 10 9 42 42 H 1.09003 * 109.46590 * 299.99551 * 15 14 12 43 43 H 1.09001 * 109.47000 * 59.99656 * 15 14 12 44 44 H 0.97001 * 119.99884 * 0.02562 * 18 16 15 45 45 H 0.97002 * 119.99300 * 180.02562 * 22 21 19 46 46 H 1.07997 * 120.03255 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2012 0.0056 5 6 4.2752 0.0071 -0.0002 6 6 3.5846 -1.1958 -0.0058 7 8 4.2658 -2.3718 -0.0121 8 6 5.6928 -2.2950 -0.0118 9 6 6.2796 -3.7078 -0.0186 10 6 7.8073 -3.6256 -0.0178 11 6 8.3942 -5.0386 -0.0252 12 6 9.8990 -4.9574 -0.0237 13 8 10.4460 -3.8801 -0.0178 14 8 10.6317 -6.0821 -0.0300 15 6 12.0756 -5.9283 -0.0286 16 6 12.7256 -7.2878 -0.0357 17 8 12.0396 -8.2881 -0.0417 18 7 14.0693 -7.3923 -0.0363 19 6 14.6607 -8.6291 -0.0421 20 1 14.0499 -9.5198 -0.0467 21 6 16.0461 -8.7369 -0.0422 22 7 16.7893 -7.6531 -0.0372 23 14 16.8518 -10.4221 -0.0509 24 1 16.4342 -11.1642 -1.2674 25 1 18.3285 -10.2647 -0.0502 26 1 16.4334 -11.1770 1.1576 27 6 2.1970 -1.1966 -0.0058 28 1 -0.3633 -0.0050 1.0277 29 1 -0.3634 0.8925 -0.5094 30 1 -0.3633 -0.8875 -0.5181 31 1 1.6565 2.1324 -0.0004 32 1 4.1176 2.1381 0.0098 33 1 5.3552 0.0102 0.0002 34 1 6.0278 -1.7576 -0.8990 35 1 6.0280 -1.7669 0.8810 36 1 5.9445 -4.2448 0.8688 37 1 5.9443 -4.2363 -0.9111 38 1 8.1428 -3.0886 -0.9050 39 1 8.1423 -3.0974 0.8749 40 1 8.0588 -5.5759 0.8618 41 1 8.0593 -5.5663 -0.9181 42 1 12.3826 -5.3737 -0.9154 43 1 12.3821 -5.3839 0.8646 44 1 14.6180 -6.5924 -0.0318 45 1 17.7564 -7.7283 -0.0376 46 1 1.6570 -2.1318 -0.0099 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731246292.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:30 Heat of formation + Delta-G solvation = -158.094301 kcal Electronic energy + Delta-G solvation = -26182.758853 eV Core-core repulsion = 22037.156884 eV Total energy + Delta-G solvation = -4145.601969 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.55444 -40.33624 -38.26808 -38.11079 -36.34082 -35.18377 -34.00683 -32.91873 -31.42040 -31.24585 -29.81997 -28.28090 -27.40623 -25.29742 -24.37240 -22.98285 -22.07010 -21.15719 -20.47735 -19.58230 -18.13873 -18.06148 -17.48464 -16.94132 -16.58004 -16.42006 -16.33304 -16.12784 -15.44148 -15.12235 -14.70082 -14.53679 -14.21502 -14.09960 -13.88314 -13.86250 -13.61759 -13.01982 -12.98270 -12.75687 -12.45360 -12.30622 -12.26600 -11.96724 -11.95453 -11.84541 -11.62376 -11.59101 -11.26398 -11.12186 -11.11831 -10.89893 -10.49542 -10.42377 -10.41247 -10.28500 -9.60242 -9.19374 -8.56064 -8.52822 -8.09016 -6.50657 -3.92762 0.91440 1.06731 2.30814 2.57916 2.90846 3.15014 3.22378 3.27292 3.35763 3.73236 4.10755 4.31959 4.39571 4.46928 4.47324 4.56065 4.66464 4.78280 4.84423 4.85106 4.91364 4.96669 5.01716 5.10890 5.14333 5.16073 5.24821 5.31347 5.33375 5.36119 5.46205 5.56311 5.57567 5.67708 5.68905 5.81825 5.91698 5.95847 6.04377 6.05344 6.18681 6.39048 6.64649 7.05687 7.46904 7.83822 7.95757 8.47967 9.06339 9.38617 9.88713 10.66516 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.054247 B = 0.001238 C = 0.001212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.033318 B =22613.209611 C =23087.586160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.049 4.049 3 C -0.163 4.163 4 C -0.076 4.076 5 C -0.216 4.216 6 C 0.137 3.863 7 O -0.315 6.315 8 C 0.059 3.941 9 C -0.119 4.119 10 C -0.106 4.106 11 C -0.111 4.111 12 C 0.457 3.543 13 O -0.517 6.517 14 O -0.327 6.327 15 C 0.061 3.939 16 C 0.437 3.563 17 O -0.576 6.576 18 N -0.552 5.552 19 C -0.304 4.304 20 H 0.106 0.894 21 C 0.026 3.974 22 N -0.897 5.897 23 Si 0.935 3.065 24 H -0.272 1.272 25 H -0.283 1.283 26 H -0.272 1.272 27 C -0.156 4.156 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.122 0.878 32 H 0.125 0.875 33 H 0.128 0.872 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.395 0.605 45 H 0.274 0.726 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.532 18.005 0.111 32.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.049 4.049 3 C -0.181 4.181 4 C -0.094 4.094 5 C -0.234 4.234 6 C 0.091 3.909 7 O -0.229 6.229 8 C -0.016 4.016 9 C -0.156 4.156 10 C -0.143 4.143 11 C -0.149 4.149 12 C 0.300 3.700 13 O -0.407 6.407 14 O -0.241 6.241 15 C -0.017 4.017 16 C 0.222 3.778 17 O -0.461 6.461 18 N -0.189 5.189 19 C -0.433 4.433 20 H 0.123 0.877 21 C -0.177 4.177 22 N -0.538 5.538 23 Si 0.761 3.239 24 H -0.197 1.197 25 H -0.209 1.209 26 H -0.197 1.197 27 C -0.175 4.175 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.140 0.860 32 H 0.143 0.857 33 H 0.146 0.854 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.127 0.873 41 H 0.127 0.873 42 H 0.104 0.896 43 H 0.104 0.896 44 H 0.228 0.772 45 H 0.084 0.916 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -27.636 17.441 0.105 32.680 hybrid contribution 1.302 0.064 0.009 1.303 sum -26.335 17.506 0.114 31.622 Atomic orbital electron populations 1.20821 0.90721 1.03039 1.02629 1.19719 0.96080 0.92274 0.96817 1.20953 0.94187 0.97572 1.05363 1.20951 0.94187 0.97474 0.96795 1.21297 1.00461 0.92290 1.09396 1.18994 0.91732 0.84738 0.95400 1.86051 1.20393 1.28113 1.88356 1.22852 0.77776 0.99150 1.01784 1.21526 0.94583 0.95190 1.04311 1.21303 0.93110 0.95565 1.04358 1.21317 0.87426 0.99709 1.06454 1.23749 0.91508 0.82292 0.72433 1.90651 1.73965 1.29993 1.46056 1.86556 1.20103 1.34615 1.82819 1.22737 0.76825 0.98696 1.03432 1.19337 0.83476 0.88977 0.85990 1.90561 1.62580 1.37649 1.55271 1.41697 1.03752 1.09693 1.63805 1.19688 0.89951 0.85324 1.48356 0.87661 1.25307 0.96159 0.99368 0.96831 1.69609 1.06319 1.28284 1.49575 0.85856 0.77589 0.81229 0.79206 1.19747 1.20854 1.19741 1.20316 0.90935 0.98685 1.07574 0.90832 0.91272 0.91264 0.85983 0.85750 0.85381 0.91728 0.91736 0.90305 0.90300 0.90523 0.90515 0.87335 0.87325 0.89590 0.89597 0.77164 0.91571 0.85231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.54 10.01 36.01 0.36 -0.18 16 2 C -0.05 -0.36 5.88 -104.64 -0.62 -0.97 16 3 C -0.16 -1.14 9.70 -39.56 -0.38 -1.53 16 4 C -0.08 -0.56 10.04 -39.61 -0.40 -0.95 16 5 C -0.22 -1.79 9.04 -39.44 -0.36 -2.14 16 6 C 0.14 1.28 6.69 -39.22 -0.26 1.02 16 7 O -0.32 -3.02 10.14 -19.45 -0.20 -3.22 16 8 C 0.06 0.44 4.74 37.15 0.18 0.62 16 9 C -0.12 -0.83 5.58 -26.74 -0.15 -0.97 16 10 C -0.11 -0.87 4.50 -26.73 -0.12 -0.99 16 11 C -0.11 -1.08 5.81 -27.88 -0.16 -1.24 16 12 C 0.46 6.76 7.96 36.00 0.29 7.04 16 13 O -0.52 -8.60 15.73 -18.75 -0.29 -8.90 16 14 O -0.33 -5.96 9.76 -45.91 -0.45 -6.41 16 15 C 0.06 1.15 5.94 36.00 0.21 1.37 16 16 C 0.44 10.56 7.86 -10.99 -0.09 10.48 16 17 O -0.58 -16.05 16.08 -14.11 -0.23 -16.28 16 18 N -0.55 -13.97 5.29 -10.96 -0.06 -14.02 16 19 C -0.30 -8.39 9.68 -14.93 -0.14 -8.54 16 20 H 0.11 3.02 7.16 -52.48 -0.38 2.65 16 21 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 22 N -0.90 -24.03 13.05 55.50 0.72 -23.30 16 23 Si 0.93 20.66 29.55 -169.99 -5.02 15.64 16 24 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 25 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 26 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 27 C -0.16 -1.34 9.64 -39.43 -0.38 -1.72 16 28 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.25 8.08 -51.93 -0.42 -0.17 16 30 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16 31 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 32 H 0.12 0.65 8.06 -52.48 -0.42 0.23 16 33 H 0.13 0.89 6.30 -52.48 -0.33 0.56 16 34 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 35 H 0.06 0.44 7.66 -51.92 -0.40 0.04 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.66 8.10 -51.93 -0.42 0.24 16 39 H 0.08 0.66 8.10 -51.93 -0.42 0.24 16 40 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.09 1.49 8.13 -51.93 -0.42 1.07 16 43 H 0.09 1.49 8.13 -51.93 -0.42 1.07 16 44 H 0.39 9.46 7.90 -40.82 -0.32 9.13 16 45 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 46 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 397.99 15.07 6.00 6.00 Total: -1.00 -33.61 397.99 -8.51 -42.12 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -6.87 Total: 6.51 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: -2.12 Total: 1.87 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: 0.67 Total: -37.33 kcal Atomic # 8 Polarization: -33.64 SS G_CDS: -1.17 Total: -34.80 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.61 -8.51 -42.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731246292.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.979 kcal (2) G-P(sol) polarization free energy of solvation -33.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds