Wall clock time and date at job start Tue Mar 31 2020 18:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 120.00276 * 2 1 4 4 H 1.48502 * 109.46958 * 274.98770 * 3 2 1 5 5 H 1.48493 * 109.47261 * 34.98361 * 3 2 1 6 6 H 1.48500 * 109.47418 * 154.98805 * 3 2 1 7 7 C 1.38815 * 119.99713 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00051 * 185.66557 * 7 2 1 9 9 N 1.36939 * 119.99942 * 5.66756 * 7 2 1 10 10 C 1.48378 * 126.56003 * 353.05879 * 9 7 2 11 11 C 1.55477 * 106.97350 * 185.48989 * 10 9 7 12 12 C 1.53134 * 101.18839 * 22.83710 * 11 10 9 13 13 H 1.08998 * 111.75866 * 77.64825 * 12 11 10 14 14 C 1.45017 * 126.56016 * 173.01190 * 9 7 2 15 15 H 1.09003 * 108.70385 * 263.53359 * 14 9 7 16 16 C 1.51082 * 119.19578 * 28.81469 * 14 9 7 17 17 C 1.53872 * 107.34388 * 183.26146 * 16 14 9 18 18 C 1.52721 * 111.52336 * 303.06615 * 17 16 14 19 19 N 1.45719 * 115.92400 * 206.28902 * 12 11 10 20 20 C 1.34783 * 122.22725 * 350.49265 * 19 12 11 21 21 O 1.21280 * 119.99631 * 359.72346 * 20 19 12 22 22 C 1.50699 * 119.99860 * 179.43843 * 20 19 12 23 23 C 1.53003 * 109.46544 * 180.27774 * 22 20 19 24 24 C 1.50707 * 109.46735 * 180.02562 * 23 22 20 25 25 C 1.33637 * 122.74462 * 124.73388 * 24 23 22 26 26 S 1.76206 * 107.92169 * 179.97438 * 25 24 23 27 27 C 1.70975 * 90.27982 * 0.27543 * 26 25 24 28 28 N 1.29027 * 110.17336 * 359.83983 * 27 26 25 29 29 H 0.97004 * 119.99731 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.96297 * 304.86085 * 10 9 7 31 31 H 1.08991 * 109.96415 * 66.07022 * 10 9 7 32 32 H 1.08991 * 110.98807 * 140.69468 * 11 10 9 33 33 H 1.09001 * 110.98260 * 264.46547 * 11 10 9 34 34 H 1.09000 * 109.88294 * 63.80068 * 16 14 9 35 35 H 1.09004 * 109.88400 * 302.71209 * 16 14 9 36 36 H 1.09003 * 109.07217 * 182.54186 * 17 16 14 37 37 H 1.08999 * 109.01672 * 63.55924 * 17 16 14 38 38 H 1.08997 * 109.16019 * 288.13674 * 18 17 16 39 39 H 1.08998 * 109.16388 * 168.94317 * 18 17 16 40 40 H 1.08996 * 109.47127 * 300.27651 * 22 20 19 41 41 H 1.08996 * 109.47000 * 60.28029 * 22 20 19 42 42 H 1.08996 * 109.47307 * 299.99766 * 23 22 20 43 43 H 1.09004 * 109.47118 * 60.00709 * 23 22 20 44 44 H 1.07999 * 126.04270 * 0.03732 * 25 24 23 45 45 H 1.08005 * 124.91222 * 179.83692 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3924 2.1072 -1.3948 5 1 1.5045 2.6199 0.8027 6 1 3.5966 1.4120 0.5919 7 6 2.0102 -1.2022 0.0005 8 1 3.0862 -1.2045 0.0929 9 7 1.3305 -2.3852 -0.1161 10 6 -0.1426 -2.5628 -0.1067 11 6 -0.4154 -4.0934 -0.1262 12 6 0.9001 -4.6369 0.4385 13 1 0.9523 -4.5239 1.5213 14 6 1.9126 -3.7041 -0.2733 15 1 1.9257 -3.9563 -1.3337 16 6 3.2794 -3.9805 0.3081 17 6 3.6628 -5.4180 -0.0845 18 6 2.6214 -6.4266 0.3956 19 7 1.2550 -5.9915 0.0354 20 6 0.3968 -6.7926 -0.6266 21 8 -0.7152 -6.3940 -0.9018 22 6 0.8210 -8.1811 -1.0305 23 6 -0.3283 -8.8710 -1.7682 24 6 0.0957 -10.2598 -2.1716 25 6 -0.5918 -11.3535 -1.8295 26 16 0.2443 -12.7517 -2.5009 27 6 1.4396 -11.7272 -3.1678 28 7 1.1783 -10.4957 -2.8851 29 1 -0.4850 0.8401 -0.0004 30 1 -0.5649 -2.1213 0.7960 31 1 -0.5795 -2.0951 -0.9889 32 1 -1.2538 -4.3488 0.5216 33 1 -0.5887 -4.4460 -1.1430 34 1 3.2458 -3.8892 1.3938 35 1 4.0055 -3.2783 -0.1016 36 1 4.6274 -5.6634 0.3598 37 1 3.7448 -5.4799 -1.1697 38 1 2.6916 -6.5251 1.4788 39 1 2.8217 -7.3942 -0.0645 40 1 1.6890 -8.1193 -1.6869 41 1 1.0785 -8.7555 -0.1407 42 1 -1.1962 -8.9328 -1.1118 43 1 -0.5857 -8.2965 -2.6581 44 1 -1.5001 -11.3763 -1.2457 45 1 2.2904 -12.0623 -3.7426 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049926310.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:26 Heat of formation + Delta-G solvation = 45.346532 kcal Electronic energy + Delta-G solvation = -26979.643776 eV Core-core repulsion = 23317.909286 eV Total energy + Delta-G solvation = -3661.734490 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.48656 -39.99147 -37.82069 -35.38654 -33.64612 -32.56774 -32.11605 -30.18953 -28.80702 -28.18370 -26.06343 -24.85840 -24.43976 -23.43315 -21.46099 -20.72532 -19.81457 -19.64862 -18.64835 -18.19456 -16.80179 -16.29635 -15.94732 -15.62217 -15.47602 -14.80108 -14.75068 -14.23093 -14.10672 -13.92635 -13.64011 -13.58157 -13.40345 -13.12939 -12.61985 -12.38921 -12.23191 -12.06270 -11.80145 -11.66943 -11.53909 -11.16920 -11.05742 -10.82652 -10.67246 -10.48078 -10.41033 -10.06182 -9.97570 -9.94842 -9.79676 -9.79182 -9.56463 -9.17090 -8.90766 -8.52942 -8.16689 -6.77491 -5.67951 -3.01189 0.40426 1.07407 1.40467 2.48298 2.89397 3.24453 3.42490 3.47411 3.49529 3.90889 4.51323 4.53524 4.76950 4.87504 4.91846 4.97350 5.04810 5.13584 5.28498 5.33391 5.41745 5.44587 5.49318 5.63465 5.73835 5.74871 5.82276 5.89446 5.91517 6.03311 6.05316 6.13099 6.31065 6.33352 6.44239 6.60616 6.76732 6.83447 6.94436 7.23857 7.41272 7.62342 7.70238 7.78198 7.87945 8.28759 8.48991 9.22767 9.86834 10.56014 11.44874 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.028502 B = 0.002375 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.153013 B =11788.365781 C =12312.660323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.007 4.007 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.593 5.593 10 C 0.172 3.828 11 C -0.128 4.128 12 C 0.117 3.883 13 H 0.078 0.922 14 C 0.158 3.842 15 H 0.018 0.982 16 C -0.115 4.115 17 C -0.130 4.130 18 C 0.111 3.889 19 N -0.601 5.601 20 C 0.516 3.484 21 O -0.534 6.534 22 C -0.131 4.131 23 C -0.029 4.029 24 C 0.070 3.930 25 C -0.253 4.253 26 S 0.105 5.895 27 C 0.024 3.976 28 N -0.464 5.464 29 H 0.252 0.748 30 H 0.049 0.951 31 H 0.043 0.957 32 H 0.060 0.940 33 H 0.083 0.917 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.091 0.909 44 H 0.179 0.821 45 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.583 -26.612 -1.883 26.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.318 5.318 10 C 0.047 3.953 11 C -0.167 4.167 12 C 0.013 3.987 13 H 0.095 0.905 14 C 0.049 3.951 15 H 0.035 0.965 16 C -0.154 4.154 17 C -0.168 4.168 18 C -0.012 4.012 19 N -0.334 5.334 20 C 0.304 3.696 21 O -0.412 6.412 22 C -0.171 4.171 23 C -0.069 4.069 24 C -0.061 4.061 25 C -0.391 4.391 26 S 0.357 5.643 27 C -0.275 4.275 28 N -0.178 5.178 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.117 0.883 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.109 0.891 44 H 0.196 0.804 45 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 3.139 -26.839 -2.231 27.114 hybrid contribution 0.419 1.641 0.251 1.712 sum 3.557 -25.199 -1.980 25.525 Atomic orbital electron populations 1.69968 1.04915 1.25030 1.56591 1.24831 0.95662 0.97625 1.02233 0.86147 0.78630 0.83792 0.77473 1.21673 1.21811 1.20677 1.18991 0.90771 0.82331 1.43407 0.90389 1.44090 1.01780 1.00288 1.85612 1.21740 0.83684 0.88764 1.01100 1.22894 0.94424 0.97403 1.01935 1.22289 0.98674 0.79431 0.98329 0.90459 1.20664 0.91444 0.86935 0.96098 0.96475 1.21423 0.98512 0.94503 1.00959 1.21898 0.97709 0.95557 1.01673 1.21696 0.81579 0.97792 1.00155 1.48044 1.13530 1.15126 1.56715 1.20465 0.84818 0.86733 0.77604 1.90703 1.20752 1.74975 1.54744 1.21590 1.00341 0.93475 1.01708 1.19948 0.97545 0.87996 1.01410 1.20460 0.91162 0.97322 0.97189 1.26908 1.07578 0.94070 1.10593 1.84057 1.19734 1.12941 1.47531 1.28440 1.03831 0.91002 1.04187 1.66141 1.17714 1.19939 1.13986 0.93753 0.93276 0.93886 0.92167 0.89897 0.91863 0.91477 0.90971 0.91770 0.91663 0.90337 0.88296 0.89467 0.89344 0.89096 0.80413 0.78400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.53 10.51 55.49 0.58 -26.95 16 2 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 3 Si 0.91 22.33 29.56 -169.99 -5.02 17.30 16 4 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.23 -6.32 9.95 -15.06 -0.15 -6.47 16 8 H 0.08 2.08 7.30 -52.49 -0.38 1.70 16 9 N -0.59 -15.39 3.34 -163.61 -0.55 -15.94 16 10 C 0.17 4.40 5.44 -1.69 -0.01 4.39 16 11 C -0.13 -2.76 4.95 -25.35 -0.13 -2.88 16 12 C 0.12 2.25 3.27 -67.24 -0.22 2.03 16 13 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 14 C 0.16 3.34 2.59 -68.65 -0.18 3.16 16 15 H 0.02 0.41 8.06 -51.93 -0.42 -0.01 16 16 C -0.12 -1.99 5.41 -27.24 -0.15 -2.14 16 17 C -0.13 -1.65 5.93 -26.42 -0.16 -1.81 16 18 C 0.11 1.31 6.33 -3.44 -0.02 1.29 16 19 N -0.60 -9.36 2.92 -164.49 -0.48 -9.84 16 20 C 0.52 7.95 7.69 -10.98 -0.08 7.86 16 21 O -0.53 -10.01 12.78 5.56 0.07 -9.94 16 22 C -0.13 -1.48 4.02 -27.88 -0.11 -1.59 16 23 C -0.03 -0.31 5.00 -27.88 -0.14 -0.45 16 24 C 0.07 0.71 6.08 -84.22 -0.51 0.20 16 25 C -0.25 -2.06 11.07 29.12 0.32 -1.74 16 26 S 0.11 0.68 23.22 -107.50 -2.50 -1.81 16 27 C 0.02 0.18 12.23 51.58 0.63 0.81 16 28 N -0.46 -4.84 10.34 -11.89 -0.12 -4.96 16 29 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.05 1.36 7.44 -51.93 -0.39 0.98 16 31 H 0.04 1.22 7.62 -51.93 -0.40 0.82 16 32 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.08 1.87 6.24 -51.93 -0.32 1.55 16 34 H 0.06 1.09 8.12 -51.93 -0.42 0.67 16 35 H 0.07 1.21 7.75 -51.93 -0.40 0.81 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 0.73 6.17 -51.93 -0.32 0.41 16 40 H 0.10 1.10 7.69 -51.93 -0.40 0.70 16 41 H 0.09 0.83 8.02 -51.93 -0.42 0.42 16 42 H 0.09 0.93 7.98 -51.93 -0.41 0.51 16 43 H 0.09 1.13 8.10 -51.93 -0.42 0.71 16 44 H 0.18 1.11 8.06 -52.49 -0.42 0.69 16 45 H 0.20 0.84 8.06 -52.48 -0.42 0.41 16 LS Contribution 365.05 15.07 5.50 5.50 Total: -1.00 -33.49 365.05 -10.31 -43.80 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -6.80 Total: 0.48 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: -1.00 Total: 2.36 kcal Atomic # 7 Polarization: -57.12 SS G_CDS: -0.57 Total: -57.69 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.07 Total: -9.94 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Atomic # 16 Polarization: 0.68 SS G_CDS: -2.50 Total: -1.81 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.49 -10.31 -43.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049926310.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.143 kcal (2) G-P(sol) polarization free energy of solvation -33.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds