Wall clock time and date at job start Tue Mar 31 2020 18:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00178 * 2 1 4 4 H 1.48498 * 109.47257 * 274.46534 * 3 2 1 5 5 H 1.48502 * 109.46682 * 34.47146 * 3 2 1 6 6 H 1.48498 * 109.46845 * 154.46483 * 3 2 1 7 7 C 1.38816 * 119.99855 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00006 * 4.65547 * 7 2 1 9 9 N 1.36931 * 120.00108 * 184.66753 * 7 2 1 10 10 C 1.46506 * 120.00372 * 174.79113 * 9 7 2 11 11 C 1.53001 * 109.46980 * 184.92854 * 10 9 7 12 12 H 1.08996 * 109.87953 * 54.11437 * 11 10 9 13 13 C 1.54322 * 109.88090 * 292.93712 * 11 10 9 14 14 C 1.55152 * 102.94438 * 218.39450 * 13 11 10 15 15 C 1.54911 * 101.58171 * 35.50203 * 14 13 11 16 16 N 1.47026 * 109.87843 * 175.13268 * 11 10 9 17 17 C 1.34776 * 125.64897 * 298.31732 * 16 11 10 18 18 O 1.21285 * 119.99933 * 354.98685 * 17 16 11 19 19 C 1.50699 * 120.00091 * 174.98309 * 17 16 11 20 20 C 1.50699 * 109.47037 * 180.02562 * 19 17 16 21 21 C 1.33641 * 122.74778 * 84.71225 * 20 19 17 22 22 S 1.76203 * 107.92094 * 179.97438 * 21 20 19 23 23 C 1.70976 * 90.28111 * 0.27267 * 22 21 20 24 24 C 1.50703 * 124.91258 * 179.83880 * 23 22 21 25 25 C 1.53002 * 117.49785 * 8.62124 * 24 23 22 26 26 C 1.53000 * 117.49766 * 299.99888 * 24 23 22 27 27 N 1.29022 * 110.16937 * 359.83989 * 23 22 21 28 28 H 0.97004 * 120.00109 * 359.97438 * 1 2 3 29 29 H 0.97003 * 119.99948 * 354.77834 * 9 7 2 30 30 H 1.08992 * 109.47224 * 64.92069 * 10 9 7 31 31 H 1.09004 * 109.46478 * 304.92044 * 10 9 7 32 32 H 1.08994 * 110.72085 * 100.02916 * 13 11 10 33 33 H 1.09006 * 110.72160 * 336.75567 * 13 11 10 34 34 H 1.09000 * 111.00539 * 277.43399 * 14 13 11 35 35 H 1.08996 * 111.00808 * 153.57639 * 14 13 11 36 36 H 1.09004 * 110.36590 * 81.83012 * 15 14 13 37 37 H 1.09003 * 110.36711 * 204.04401 * 15 14 13 38 38 H 1.09003 * 109.46746 * 300.00181 * 19 17 16 39 39 H 1.08994 * 109.47089 * 59.99754 * 19 17 16 40 40 H 1.08000 * 126.04016 * 0.03184 * 21 20 19 41 41 H 1.09003 * 115.54899 * 154.32906 * 24 23 22 42 42 H 1.08996 * 117.49852 * 0.02562 * 25 24 23 43 43 H 1.09003 * 117.49582 * 145.01778 * 25 24 23 44 44 H 1.08998 * 117.49656 * 214.97605 * 26 24 23 45 45 H 1.08995 * 117.49939 * 0.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4033 2.1009 -1.3958 5 1 1.4980 2.6235 0.7925 6 1 3.5917 1.4146 0.6035 7 6 2.0102 -1.2022 -0.0005 8 1 1.4729 -2.1359 -0.0769 9 7 3.3761 -1.2043 0.0960 10 6 4.1005 -2.4725 0.2104 11 6 5.5891 -2.1919 0.4258 12 1 5.7212 -1.5277 1.2799 13 6 6.1907 -1.5488 -0.8414 14 6 7.5942 -2.2041 -0.9310 15 6 7.3028 -3.6351 -0.4142 16 7 6.3072 -3.4537 0.6579 17 6 6.0916 -4.3034 1.6816 18 8 5.3080 -4.0091 2.5593 19 6 6.8241 -5.6193 1.7357 20 6 6.4066 -6.3763 2.9700 21 6 5.3151 -7.1463 3.0113 22 16 5.2011 -7.8392 4.6273 23 6 6.6280 -7.0182 5.0891 24 6 7.2609 -7.0903 6.4549 25 6 6.6964 -8.1140 7.4420 26 6 6.4236 -6.6225 7.6470 27 7 7.0844 -6.3281 4.0991 28 1 -0.4850 0.8401 0.0004 29 1 3.8641 -0.3660 0.0884 30 1 3.9683 -3.0503 -0.7042 31 1 3.7112 -3.0381 1.0570 32 1 6.2762 -0.4687 -0.7223 33 1 5.5935 -1.7948 -1.7195 34 1 8.3063 -1.6924 -0.2836 35 1 7.9503 -2.2256 -1.9609 36 1 6.8912 -4.2508 -1.2140 37 1 8.2117 -4.0875 -0.0175 38 1 6.5815 -6.2068 0.8501 39 1 7.8981 -5.4363 1.7671 40 1 4.6253 -7.3149 2.1975 41 1 8.3334 -6.8982 6.4868 42 1 5.8676 -8.7357 7.1034 43 1 7.3977 -8.5958 8.1234 44 1 6.9454 -6.1231 8.4634 45 1 5.4150 -6.2631 7.4435 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483946310.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:55 Heat of formation + Delta-G solvation = 57.229045 kcal Electronic energy + Delta-G solvation = -26115.390159 eV Core-core repulsion = 22454.170934 eV Total energy + Delta-G solvation = -3661.219225 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.52689 -39.64965 -37.69786 -37.14309 -34.67726 -32.46638 -31.49554 -31.33311 -29.29005 -28.11322 -25.84931 -25.25799 -23.21325 -22.82678 -21.90252 -21.68463 -20.71969 -19.87193 -18.98301 -17.82075 -17.58629 -16.95737 -16.45385 -16.31540 -15.42009 -14.80708 -14.59962 -14.45396 -14.41481 -14.00163 -13.89279 -13.57756 -13.38282 -12.97841 -12.89788 -12.69495 -12.57371 -12.37044 -12.24957 -12.00339 -11.65355 -11.48387 -11.25081 -11.18123 -11.12723 -10.93437 -10.89816 -10.65631 -10.49100 -10.06591 -9.78814 -9.72769 -9.56994 -9.43976 -8.82007 -8.76379 -8.48931 -7.17574 -5.72415 -3.07429 0.56671 1.21048 1.59232 2.47860 2.75747 3.10734 3.39855 3.41361 3.44563 3.47887 3.72216 4.38533 4.46339 4.52296 4.52542 4.55644 4.62774 4.81457 4.86260 4.96386 5.01833 5.15350 5.22049 5.22710 5.27580 5.35964 5.44046 5.47965 5.55150 5.56651 5.63592 5.65478 5.70089 5.77927 5.85022 5.94438 5.98068 6.01696 6.28122 6.42319 6.74022 6.90674 7.61807 7.63765 8.05126 8.30941 8.46413 9.25871 9.97874 10.18573 11.46093 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012967 B = 0.002795 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.770162 B =10017.023607 C =11218.126788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.886 3.114 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.240 4.240 8 H 0.089 0.911 9 N -0.752 5.752 10 C 0.151 3.849 11 C 0.128 3.872 12 H 0.075 0.925 13 C -0.126 4.126 14 C -0.133 4.133 15 C 0.099 3.901 16 N -0.614 5.614 17 C 0.530 3.470 18 O -0.518 6.518 19 C -0.061 4.061 20 C 0.089 3.911 21 C -0.240 4.240 22 S 0.124 5.876 23 C 0.078 3.922 24 C -0.085 4.085 25 C -0.170 4.170 26 C -0.159 4.159 27 N -0.462 5.462 28 H 0.259 0.741 29 H 0.361 0.639 30 H 0.023 0.977 31 H 0.042 0.958 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.110 0.890 39 H 0.109 0.891 40 H 0.178 0.822 41 H 0.132 0.868 42 H 0.098 0.902 43 H 0.109 0.891 44 H 0.108 0.892 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.115 -17.866 6.810 28.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.192 4.192 3 Si 0.717 3.283 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.370 4.370 8 H 0.106 0.894 9 N -0.399 5.399 10 C 0.023 3.977 11 C 0.024 3.976 12 H 0.093 0.907 13 C -0.164 4.164 14 C -0.171 4.171 15 C -0.024 4.024 16 N -0.350 5.350 17 C 0.317 3.683 18 O -0.393 6.393 19 C -0.104 4.104 20 C -0.043 4.043 21 C -0.380 4.380 22 S 0.379 5.621 23 C -0.200 4.200 24 C -0.107 4.107 25 C -0.208 4.208 26 C -0.198 4.198 27 N -0.176 5.176 28 H 0.069 0.931 29 H 0.194 0.806 30 H 0.040 0.960 31 H 0.060 0.940 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.092 0.908 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.128 0.872 39 H 0.127 0.873 40 H 0.195 0.805 41 H 0.150 0.850 42 H 0.117 0.883 43 H 0.127 0.873 44 H 0.126 0.874 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 20.206 -18.236 7.926 28.349 hybrid contribution 0.714 1.796 -0.936 2.147 sum 20.919 -16.440 6.990 27.509 Atomic orbital electron populations 1.69718 1.05110 1.25730 1.57662 1.24672 0.95226 0.97217 1.02129 0.86505 0.79250 0.85036 0.77554 1.21136 1.21697 1.20323 1.19027 0.80828 0.94812 1.42287 0.89368 1.42608 1.04520 1.02199 1.90527 1.20905 0.88160 0.89779 0.98811 1.21833 0.93357 0.84578 0.97784 0.90673 1.22720 0.95266 1.00459 0.97951 1.22783 0.97738 0.94853 1.01755 1.22344 0.91715 0.98167 0.90215 1.48473 1.38087 1.22691 1.25704 1.19964 0.82846 0.84807 0.80715 1.90785 1.35977 1.75813 1.36696 1.20158 1.02220 0.93363 0.94675 1.19387 0.92961 0.98330 0.93575 1.26789 1.03617 1.06245 1.01303 1.83762 1.25979 1.46319 1.06021 1.25971 0.96962 0.98904 0.98146 1.20385 0.99580 1.06629 0.84061 1.23143 1.03492 0.92589 1.01542 1.23162 1.01481 0.96829 0.98338 1.65864 1.32828 1.19859 0.99024 0.93114 0.80604 0.95952 0.93956 0.90164 0.89660 0.90765 0.89840 0.91123 0.90722 0.87202 0.87318 0.80471 0.85005 0.88325 0.87286 0.87410 0.88041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -30.26 13.97 55.49 0.78 -29.49 16 2 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16 3 Si 0.89 22.71 27.92 -169.99 -4.75 17.96 16 4 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 6 H -0.28 -6.66 6.26 56.52 0.35 -6.30 16 7 C -0.24 -7.13 10.47 -15.06 -0.16 -7.29 16 8 H 0.09 2.82 8.06 -52.49 -0.42 2.40 16 9 N -0.75 -18.91 5.26 -59.91 -0.31 -19.22 16 10 C 0.15 3.24 5.66 -4.04 -0.02 3.22 16 11 C 0.13 2.16 2.92 -66.95 -0.20 1.97 16 12 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 13 C -0.13 -1.69 6.09 -24.90 -0.15 -1.84 16 14 C -0.13 -1.26 7.08 -24.58 -0.17 -1.43 16 15 C 0.10 0.95 6.65 -2.53 -0.02 0.93 16 16 N -0.61 -8.76 3.06 -163.01 -0.50 -9.26 16 17 C 0.53 8.36 7.57 -10.99 -0.08 8.27 16 18 O -0.52 -10.80 15.21 5.55 0.08 -10.72 16 19 C -0.06 -0.71 5.20 -29.04 -0.15 -0.86 16 20 C 0.09 1.21 5.23 -84.23 -0.44 0.77 16 21 C -0.24 -2.99 11.14 29.12 0.32 -2.66 16 22 S 0.12 1.34 21.94 -107.50 -2.36 -1.02 16 23 C 0.08 0.94 7.04 -13.46 -0.09 0.85 16 24 C -0.08 -0.77 6.33 -91.77 -0.58 -1.35 16 25 C -0.17 -1.11 10.01 -26.73 -0.27 -1.38 16 26 C -0.16 -1.24 10.23 -26.73 -0.27 -1.52 16 27 N -0.46 -6.57 10.53 -8.06 -0.08 -6.65 16 28 H 0.26 7.94 8.31 -40.82 -0.34 7.60 16 29 H 0.36 8.70 5.20 -40.82 -0.21 8.49 16 30 H 0.02 0.48 8.03 -51.93 -0.42 0.06 16 31 H 0.04 1.04 6.89 -51.93 -0.36 0.68 16 32 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.08 1.19 7.77 -51.93 -0.40 0.79 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.54 7.51 -51.93 -0.39 0.15 16 38 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.11 1.05 7.77 -51.93 -0.40 0.65 16 40 H 0.18 1.89 8.06 -52.49 -0.42 1.47 16 41 H 0.13 1.09 8.14 -51.93 -0.42 0.66 16 42 H 0.10 0.64 7.22 -51.93 -0.38 0.26 16 43 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 381.74 15.07 5.75 5.75 Total: -1.00 -37.79 381.74 -10.59 -48.38 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -6.81 Total: 6.59 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -2.38 Total: -2.32 kcal Atomic # 7 Polarization: -64.50 SS G_CDS: -0.12 Total: -64.62 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.08 Total: -10.72 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -4.75 Total: 17.96 kcal Atomic # 16 Polarization: 1.34 SS G_CDS: -2.36 Total: -1.02 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -37.79 -10.59 -48.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483946310.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.606 kcal (2) G-P(sol) polarization free energy of solvation -37.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds