Wall clock time and date at job start Tue Mar 31 2020 18:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86794 * 119.99854 * 2 1 4 4 H 1.48504 * 109.47089 * 274.45686 * 3 2 1 5 5 H 1.48503 * 109.47370 * 34.45409 * 3 2 1 6 6 H 1.48501 * 109.47115 * 154.45721 * 3 2 1 7 7 C 1.38809 * 120.00057 * 180.28167 * 2 1 3 8 8 H 1.08009 * 120.00107 * 353.92697 * 7 2 1 9 9 N 1.36933 * 120.00258 * 173.93600 * 7 2 1 10 10 C 1.46500 * 120.00352 * 184.80749 * 9 7 2 11 11 C 1.53000 * 109.47137 * 174.87725 * 10 9 7 12 12 N 1.46498 * 110.01532 * 53.34336 * 11 10 9 13 13 C 1.34777 * 120.00282 * 62.41514 * 12 11 10 14 14 O 1.21683 * 120.00031 * 5.03957 * 13 12 11 15 15 C 1.46687 * 119.99714 * 185.03962 * 13 12 11 16 16 C 1.35657 * 126.13193 * 0.02562 * 15 13 12 17 17 N 1.30945 * 114.18833 * 180.02562 * 16 15 13 18 18 C 1.29421 * 117.36990 * 0.02562 * 17 16 15 19 19 C 1.50702 * 124.80989 * 180.02562 * 18 17 16 20 20 C 1.53001 * 117.49693 * 8.71890 * 19 18 17 21 21 C 1.53004 * 117.49338 * 300.06067 * 19 18 17 22 22 S 1.70959 * 110.38685 * 359.72595 * 18 17 16 23 23 C 1.54262 * 110.03666 * 291.89394 * 11 10 9 24 24 C 1.54882 * 104.19886 * 217.10855 * 23 11 10 25 25 C 1.54886 * 102.74809 * 37.94070 * 24 23 11 26 26 C 1.53883 * 110.03006 * 174.72915 * 11 10 9 27 27 H 0.96995 * 119.99847 * 359.72174 * 1 2 3 28 28 H 0.96997 * 119.99984 * 4.80368 * 9 7 2 29 29 H 1.09003 * 109.46813 * 294.88176 * 10 9 7 30 30 H 1.09005 * 109.46865 * 54.87824 * 10 9 7 31 31 H 0.96996 * 119.99938 * 242.41574 * 12 11 10 32 32 H 1.08000 * 122.90741 * 359.97438 * 16 15 13 33 33 H 1.08997 * 115.54840 * 154.39017 * 19 18 17 34 34 H 1.09001 * 117.49476 * 0.02562 * 20 19 18 35 35 H 1.08997 * 117.49938 * 145.02038 * 20 19 18 36 36 H 1.09005 * 117.49521 * 214.97455 * 21 19 18 37 37 H 1.08993 * 117.50395 * 359.97438 * 21 19 18 38 38 H 1.09002 * 110.48504 * 335.78809 * 23 11 10 39 39 H 1.09000 * 110.48472 * 98.42681 * 23 11 10 40 40 H 1.09007 * 110.75656 * 279.62718 * 24 23 11 41 41 H 1.09001 * 110.75626 * 156.25862 * 24 23 11 42 42 H 1.09005 * 110.48345 * 203.37979 * 25 24 23 43 43 H 1.08997 * 110.48729 * 80.74265 * 25 24 23 44 44 H 1.08993 * 110.03016 * 238.57385 * 26 11 10 45 45 H 1.08997 * 110.03206 * 0.02562 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4035 2.1008 -1.3959 5 1 1.4979 2.6237 0.7921 6 1 3.5917 1.4148 0.6037 7 6 2.0103 -1.2021 -0.0059 8 1 1.4748 -2.1354 0.0885 9 7 3.3739 -1.2048 -0.1312 10 6 4.0967 -2.4742 -0.2434 11 6 5.5793 -2.1960 -0.4989 12 7 6.1025 -1.2872 0.5241 13 6 6.1100 -1.6622 1.8186 14 8 5.7682 -2.7884 2.1277 15 6 6.5300 -0.7127 2.8548 16 6 6.9327 0.5666 2.6516 17 7 7.2572 1.2073 3.7466 18 6 7.1589 0.5626 4.8645 19 6 7.4869 1.1350 6.2194 20 6 7.7732 2.6358 6.3018 21 6 8.9165 1.6288 6.4504 22 16 6.5964 -1.0278 4.5873 23 6 5.7676 -1.5801 -1.9007 24 6 7.0909 -2.2004 -2.4135 25 6 7.0151 -3.6538 -1.8834 26 6 6.3726 -3.5145 -0.4880 27 1 -0.4850 0.8400 0.0041 28 1 3.8613 -0.3663 -0.1457 29 1 3.9871 -3.0378 0.6831 30 1 3.6877 -3.0532 -1.0715 31 1 6.4436 -0.4155 0.2698 32 1 6.9824 1.0175 1.6715 33 1 6.9713 0.6740 7.0618 34 1 7.7239 3.2090 5.3760 35 1 7.4463 3.1620 7.1986 36 1 9.3413 1.4930 7.4450 37 1 9.6199 1.5392 5.6226 38 1 4.9390 -1.8559 -2.5529 39 1 5.8559 -0.4958 -1.8322 40 1 7.9507 -1.6798 -1.9917 41 1 7.1267 -2.1879 -3.5029 42 1 8.0138 -4.0829 -1.8025 43 1 6.3880 -4.2645 -2.5329 44 1 7.1472 -3.4778 0.2779 45 1 5.7012 -4.3526 -0.3011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732234310.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:07 Heat of formation + Delta-G solvation = 47.388248 kcal Electronic energy + Delta-G solvation = -26995.268392 eV Core-core repulsion = 23333.622438 eV Total energy + Delta-G solvation = -3661.645954 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.50654 -39.75803 -37.69623 -37.00894 -34.49298 -33.39830 -31.43306 -30.45752 -28.74087 -28.25501 -26.59445 -24.61181 -23.13811 -22.68030 -21.97368 -21.70986 -20.70613 -19.65844 -18.97470 -18.30423 -17.56267 -17.10078 -16.20936 -15.79690 -15.31831 -14.87753 -14.70290 -14.52087 -14.40275 -14.32203 -13.98910 -13.74162 -13.27714 -13.01547 -12.69137 -12.51653 -12.12519 -11.90806 -11.83177 -11.64820 -11.39663 -11.13334 -11.07734 -11.03633 -10.93487 -10.92125 -10.76077 -10.61558 -10.44573 -10.17475 -10.07157 -9.60589 -9.52925 -9.48760 -8.94515 -8.82405 -8.72893 -7.16586 -5.74368 -3.07887 0.17804 1.05006 1.60573 2.36315 3.24209 3.35007 3.35810 3.41784 3.44195 3.52249 3.83192 4.44113 4.50752 4.54123 4.59946 4.65280 4.71881 4.85385 4.95635 5.03386 5.14768 5.31704 5.35801 5.46572 5.47766 5.57288 5.58114 5.67357 5.68834 5.72864 5.84262 5.85904 5.88400 5.93123 5.97940 6.13188 6.26049 6.37113 6.41806 6.46625 6.77339 6.94003 7.49333 7.61258 8.04374 8.34055 8.45019 9.24805 9.97023 10.18157 11.44393 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.009339 B = 0.004451 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2997.540329 B = 6288.670913 C = 8155.164040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.004 3.996 3 Si 0.881 3.119 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.237 4.237 8 H 0.089 0.911 9 N -0.750 5.750 10 C 0.151 3.849 11 C 0.167 3.833 12 N -0.703 5.703 13 C 0.601 3.399 14 O -0.524 6.524 15 C -0.288 4.288 16 C 0.090 3.910 17 N -0.479 5.479 18 C 0.063 3.937 19 C -0.100 4.100 20 C -0.148 4.148 21 C -0.154 4.154 22 S 0.239 5.761 23 C -0.121 4.121 24 C -0.125 4.125 25 C -0.125 4.125 26 C -0.116 4.116 27 H 0.258 0.742 28 H 0.358 0.642 29 H 0.041 0.959 30 H 0.040 0.960 31 H 0.394 0.606 32 H 0.178 0.822 33 H 0.129 0.871 34 H 0.109 0.891 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.067 0.933 42 H 0.062 0.938 43 H 0.067 0.933 44 H 0.069 0.931 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.966 0.247 6.790 22.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.191 4.191 3 Si 0.711 3.289 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.367 4.367 8 H 0.107 0.893 9 N -0.396 5.396 10 C 0.023 3.977 11 C 0.082 3.918 12 N -0.355 5.355 13 C 0.386 3.614 14 O -0.401 6.401 15 C -0.413 4.413 16 C -0.068 4.068 17 N -0.193 5.193 18 C -0.210 4.210 19 C -0.122 4.122 20 C -0.187 4.187 21 C -0.193 4.193 22 S 0.499 5.501 23 C -0.159 4.159 24 C -0.162 4.162 25 C -0.162 4.162 26 C -0.155 4.155 27 H 0.068 0.932 28 H 0.190 0.810 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.229 0.771 32 H 0.195 0.805 33 H 0.147 0.853 34 H 0.127 0.873 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.117 0.883 38 H 0.109 0.891 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 21.378 -1.034 7.704 22.747 hybrid contribution 0.504 2.225 -0.983 2.484 sum 21.882 1.191 6.721 22.922 Atomic orbital electron populations 1.69715 1.05038 1.25615 1.57851 1.24631 0.95157 0.96982 1.02373 0.86570 0.79267 0.85438 0.77591 1.21141 1.21796 1.20611 1.19061 0.81074 0.94808 1.41740 0.89299 1.42579 1.04617 1.02096 1.90285 1.21126 0.87169 0.89721 0.99719 1.21394 0.94719 0.89264 0.86466 1.45843 1.63875 1.19997 1.05769 1.16522 0.77429 0.85896 0.81586 1.90823 1.47659 1.19864 1.81784 1.25891 1.15921 1.00586 0.98852 1.22059 0.97103 0.89528 0.98100 1.65974 1.19298 1.36699 0.97318 1.26462 1.01631 0.95686 0.97238 1.20543 1.01634 0.99062 0.90953 1.23035 1.01171 0.90170 1.04331 1.23060 0.90066 1.02783 1.03409 1.83978 1.56536 1.11157 0.98473 1.22645 0.98449 1.00008 0.94794 1.22528 0.97370 0.96042 1.00285 1.22394 1.00391 0.96795 0.96658 1.22409 0.99425 0.96849 0.96803 0.93176 0.80977 0.94082 0.94239 0.77119 0.80520 0.85288 0.87278 0.87956 0.87781 0.88282 0.89086 0.91308 0.91815 0.91445 0.91943 0.91380 0.91211 0.90602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.91 13.97 55.49 0.78 -29.14 16 2 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 3 Si 0.88 22.47 27.77 -169.99 -4.72 17.75 16 4 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 6 H -0.28 -6.68 6.49 56.52 0.37 -6.31 16 7 C -0.24 -6.88 10.47 -15.06 -0.16 -7.04 16 8 H 0.09 2.79 8.06 -52.48 -0.42 2.37 16 9 N -0.75 -18.09 5.10 -59.90 -0.31 -18.40 16 10 C 0.15 3.08 4.59 -4.04 -0.02 3.06 16 11 C 0.17 2.61 0.58 -130.70 -0.08 2.53 16 12 N -0.70 -10.67 4.38 -47.86 -0.21 -10.88 16 13 C 0.60 10.26 6.94 -12.85 -0.09 10.17 16 14 O -0.52 -10.39 14.18 5.20 0.07 -10.31 16 15 C -0.29 -4.39 6.48 -37.10 -0.24 -4.63 16 16 C 0.09 1.25 10.93 -18.85 -0.21 1.04 16 17 N -0.48 -6.59 9.98 -11.50 -0.11 -6.70 16 18 C 0.06 0.78 6.96 -13.29 -0.09 0.69 16 19 C -0.10 -0.92 6.28 -91.77 -0.58 -1.49 16 20 C -0.15 -1.22 10.12 -26.69 -0.27 -1.49 16 21 C -0.15 -1.13 10.24 -26.69 -0.27 -1.40 16 22 S 0.24 3.16 23.01 -107.50 -2.47 0.68 16 23 C -0.12 -1.62 5.82 -25.08 -0.15 -1.77 16 24 C -0.12 -1.32 6.91 -24.74 -0.17 -1.49 16 25 C -0.12 -1.38 6.83 -25.08 -0.17 -1.55 16 26 C -0.12 -1.62 5.17 -25.61 -0.13 -1.75 16 27 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 28 H 0.36 8.29 5.04 -40.82 -0.21 8.09 16 29 H 0.04 0.95 6.75 -51.93 -0.35 0.60 16 30 H 0.04 0.81 8.00 -51.93 -0.42 0.39 16 31 H 0.39 4.99 6.96 -40.82 -0.28 4.71 16 32 H 0.18 2.02 7.16 -52.49 -0.38 1.64 16 33 H 0.13 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.11 1.07 7.84 -51.93 -0.41 0.66 16 35 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.09 1.32 7.76 -51.93 -0.40 0.92 16 39 H 0.07 0.88 7.71 -51.93 -0.40 0.48 16 40 H 0.06 0.63 8.14 -51.92 -0.42 0.20 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.07 1.02 6.96 -51.93 -0.36 0.66 16 45 H 0.08 1.13 7.67 -51.93 -0.40 0.73 16 LS Contribution 376.26 15.07 5.67 5.67 Total: -1.00 -35.11 376.26 -10.60 -45.71 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -6.58 Total: 10.71 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -2.72 Total: -5.10 kcal Atomic # 7 Polarization: -65.26 SS G_CDS: 0.15 Total: -65.11 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.07 Total: -10.31 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.72 Total: 17.75 kcal Atomic # 16 Polarization: 3.16 SS G_CDS: -2.47 Total: 0.68 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.11 -10.60 -45.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732234310.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.098 kcal (2) G-P(sol) polarization free energy of solvation -35.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds