Wall clock time and date at job start Tue Mar 31 2020 20:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.28649 * 124.72254 * 2 1 4 4 C 1.33558 * 115.76762 * 180.18431 * 3 2 1 5 5 C 1.47268 * 123.14069 * 179.82833 * 4 3 2 6 6 O 1.21630 * 119.99974 * 186.15597 * 5 4 3 7 7 N 1.34774 * 119.99787 * 6.14998 * 5 4 3 8 8 C 1.43505 * 122.54833 * 176.58638 * 7 5 4 9 9 C 1.51725 * 114.26135 * 122.92512 * 8 7 5 10 10 C 1.51148 * 111.88746 * 82.63986 * 9 8 7 11 11 H 1.09000 * 110.23216 * 34.32223 * 10 9 8 12 12 C 1.53399 * 110.93367 * 156.75257 * 10 9 8 13 13 N 1.46599 * 108.10866 * 102.74141 * 12 10 9 14 14 C 1.36938 * 125.31671 * 178.65505 * 13 12 10 15 15 H 1.08005 * 119.99772 * 350.20574 * 14 13 12 16 16 C 1.38806 * 120.00361 * 170.20729 * 14 13 12 17 17 N 1.31623 * 119.99863 * 346.15684 * 16 14 13 18 18 Si 1.86805 * 120.00428 * 166.15503 * 16 14 13 19 19 H 1.48498 * 109.46908 * 94.97333 * 18 16 14 20 20 H 1.48500 * 109.47278 * 214.97260 * 18 16 14 21 21 H 1.48496 * 109.47082 * 334.97206 * 18 16 14 22 22 C 1.46658 * 109.36960 * 358.65574 * 13 12 10 23 23 C 1.54199 * 106.89483 * 18.24947 * 22 13 12 24 24 H 1.09000 * 111.45529 * 91.58343 * 23 22 13 25 25 C 1.51856 * 109.36602 * 214.10114 * 23 22 13 26 26 C 1.49544 * 122.55149 * 356.56202 * 7 5 4 27 27 C 1.35208 * 113.71589 * 359.56205 * 4 3 2 28 28 S 1.70769 * 124.71994 * 179.72599 * 2 1 3 29 29 H 1.09000 * 109.46976 * 180.24290 * 1 2 3 30 30 H 1.08996 * 109.47627 * 300.24552 * 1 2 3 31 31 H 1.09007 * 109.46662 * 60.24952 * 1 2 3 32 32 H 1.09004 * 108.52801 * 244.16281 * 8 7 5 33 33 H 1.08997 * 108.53006 * 1.68555 * 8 7 5 34 34 H 1.08996 * 108.99992 * 203.26631 * 9 8 7 35 35 H 1.09009 * 108.99270 * 322.10504 * 9 8 7 36 36 H 1.08997 * 109.74554 * 222.42021 * 12 10 9 37 37 H 1.09007 * 109.74364 * 343.07182 * 12 10 9 38 38 H 0.96998 * 120.00093 * 179.97438 * 17 16 14 39 39 H 1.08992 * 109.97154 * 137.64173 * 22 13 12 40 40 H 1.09001 * 109.96745 * 258.87236 * 22 13 12 41 41 H 1.09003 * 109.00311 * 54.39063 * 25 23 22 42 42 H 1.08998 * 109.00892 * 295.52169 * 25 23 22 43 43 H 1.09004 * 110.26131 * 131.26005 * 26 7 5 44 44 H 1.09001 * 110.39328 * 9.22690 * 26 7 5 45 45 H 1.08003 * 125.58493 * 180.26900 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2398 1.0574 0.0000 4 6 3.5591 0.8495 -0.0039 5 6 4.5463 1.9423 -0.0082 6 8 5.7307 1.6914 -0.1245 7 7 4.1373 3.2204 0.1167 8 6 5.0552 4.3210 0.1912 9 6 4.8462 5.3803 -0.8748 10 6 3.7540 6.3537 -0.4953 11 1 3.7519 6.5165 0.5824 12 6 3.9273 7.6870 -1.2338 13 7 2.9591 7.7279 -2.3338 14 6 2.7926 8.7724 -3.2036 15 1 3.2856 9.7150 -3.0162 16 6 1.9904 8.6199 -4.3260 17 7 1.6123 7.4179 -4.7063 18 14 1.4474 10.1206 -5.2970 19 1 2.3811 10.3412 -6.4304 20 1 0.0755 9.9011 -5.8214 21 1 1.4538 11.3123 -4.4110 22 6 2.1964 6.4754 -2.3573 23 6 2.3742 5.8165 -0.9745 24 1 1.5851 6.1171 -0.2853 25 6 2.3946 4.3066 -1.1351 26 6 2.6925 3.5995 0.1877 27 6 3.9036 -0.4579 0.0023 28 16 2.4796 -1.4036 0.0067 29 1 -0.3633 -1.0277 0.0044 30 1 -0.3634 0.5176 0.8877 31 1 -0.3633 0.5100 -0.8923 32 1 4.9548 4.7901 1.1700 33 1 6.0696 3.9329 0.0996 34 1 5.7771 5.9291 -1.0170 35 1 4.5755 4.8925 -1.8114 36 1 3.7417 8.5143 -0.5488 37 1 4.9397 7.7588 -1.6316 38 1 1.0514 7.3113 -5.4904 39 1 1.1422 6.6848 -2.5377 40 1 2.5838 5.8183 -3.1358 41 1 3.1609 4.0373 -1.8620 42 1 1.4238 3.9757 -1.5038 43 1 2.5205 4.2763 1.0247 44 1 2.0708 2.7099 0.2885 45 1 4.9131 -0.8418 0.0047 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000946728362.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:54 Heat of formation + Delta-G solvation = 51.271021 kcal Electronic energy + Delta-G solvation = -27447.683046 eV Core-core repulsion = 23786.205461 eV Total energy + Delta-G solvation = -3661.477585 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.95385 -39.45227 -38.22859 -35.79836 -33.04976 -32.65560 -32.07303 -30.67449 -28.69395 -27.72037 -27.34590 -25.49186 -24.04531 -22.68927 -22.50156 -20.84509 -20.05987 -19.73675 -18.56608 -18.17818 -16.85211 -16.41991 -16.15405 -15.78131 -15.18729 -14.96199 -14.83591 -14.27052 -14.01713 -13.86547 -13.65912 -13.53678 -12.96623 -12.91456 -12.85657 -12.55121 -12.40578 -12.15818 -12.06253 -11.67840 -11.32081 -11.27096 -11.11629 -10.76450 -10.64619 -10.63075 -10.22627 -10.06816 -9.95551 -9.92018 -9.69617 -9.65942 -9.48947 -9.19847 -9.12310 -8.54788 -8.40046 -6.71313 -5.70018 -3.00646 0.25905 0.91884 1.29621 1.74738 3.08605 3.26881 3.42187 3.48182 3.50641 3.68201 4.48243 4.55026 4.75492 4.95639 5.03849 5.09887 5.14645 5.17938 5.24581 5.40769 5.45466 5.51827 5.56089 5.59354 5.68289 5.73997 5.86324 6.03297 6.06962 6.19224 6.25554 6.29296 6.52325 6.55280 6.62974 6.70649 6.75991 6.80276 6.88202 7.12283 7.16724 7.50099 7.56016 7.70780 7.84859 8.16297 8.33346 9.26674 9.89598 10.56605 11.42775 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.017536 B = 0.003006 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.309116 B = 9312.051163 C =10297.996893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.026 3.974 3 N -0.435 5.435 4 C 0.023 3.977 5 C 0.596 3.404 6 O -0.544 6.544 7 N -0.585 5.585 8 C 0.110 3.890 9 C -0.125 4.125 10 C -0.090 4.090 11 H 0.065 0.935 12 C 0.141 3.859 13 N -0.600 5.600 14 C -0.230 4.230 15 H 0.075 0.925 16 C -0.007 4.007 17 N -0.915 5.915 18 Si 0.906 3.094 19 H -0.290 1.290 20 H -0.290 1.290 21 H -0.281 1.281 22 C 0.184 3.816 23 C -0.108 4.108 24 H 0.065 0.935 25 C -0.120 4.120 26 C 0.070 3.930 27 C -0.230 4.230 28 S 0.207 5.793 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.019 0.981 37 H 0.021 0.979 38 H 0.251 0.749 39 H 0.048 0.952 40 H 0.033 0.967 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.146 0.854 45 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.619 -19.584 13.529 23.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.252 4.252 3 N -0.151 5.151 4 C -0.111 4.111 5 C 0.381 3.619 6 O -0.423 6.423 7 N -0.316 5.316 8 C -0.014 4.014 9 C -0.163 4.163 10 C -0.109 4.109 11 H 0.083 0.917 12 C 0.015 3.985 13 N -0.326 5.326 14 C -0.359 4.359 15 H 0.093 0.907 16 C -0.203 4.203 17 N -0.561 5.561 18 Si 0.737 3.263 19 H -0.217 1.217 20 H -0.216 1.216 21 H -0.206 1.206 22 C 0.059 3.941 23 C -0.128 4.128 24 H 0.084 0.916 25 C -0.158 4.158 26 C -0.052 4.052 27 C -0.372 4.372 28 S 0.463 5.537 29 H 0.099 0.901 30 H 0.110 0.890 31 H 0.112 0.888 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.037 0.963 37 H 0.039 0.961 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.051 0.949 41 H 0.089 0.911 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.163 0.837 45 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -1.543 -20.227 13.282 24.247 hybrid contribution 0.442 1.759 -0.711 1.948 sum -1.102 -18.468 12.571 22.368 Atomic orbital electron populations 1.20487 0.84513 1.03766 1.05125 1.27435 1.02643 0.91621 1.03542 1.66769 1.03147 1.29197 1.16026 1.20405 0.89804 0.93385 1.07525 1.16946 0.86417 0.81505 0.77019 1.90796 1.16488 1.83335 1.51639 1.47778 1.09443 1.04669 1.69685 1.20681 0.94172 0.87479 0.99042 1.21450 0.99200 0.96207 0.99405 1.21751 0.94985 0.95462 0.98720 0.91657 1.21138 0.93344 0.93662 0.90318 1.44188 1.38969 1.16732 1.32699 1.19000 1.25789 0.90181 1.00914 0.90731 1.24788 1.01696 0.96569 0.97296 1.70015 1.40153 1.19660 1.26309 0.86189 0.77990 0.82299 0.79847 1.21701 1.21639 1.20634 1.21041 0.96478 0.86649 0.89937 1.22401 0.95958 0.94153 1.00288 0.91639 1.21774 1.02180 0.94892 0.96958 1.23597 0.80257 1.03362 0.97960 1.26527 1.06060 0.96698 1.07903 1.82841 0.94630 1.11501 1.64684 0.90115 0.89042 0.88788 0.92189 0.90125 0.91041 0.90579 0.96277 0.96128 0.93855 0.93395 0.94919 0.91126 0.91713 0.91429 0.83730 0.79415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.42 10.47 36.01 0.38 -0.04 16 2 C 0.03 0.22 7.34 -13.61 -0.10 0.12 16 3 N -0.44 -5.09 6.74 -8.51 -0.06 -5.15 16 4 C 0.02 0.30 6.58 -84.53 -0.56 -0.26 16 5 C 0.60 9.37 7.72 -12.59 -0.10 9.27 16 6 O -0.54 -9.82 16.23 5.25 0.09 -9.73 16 7 N -0.59 -8.79 2.61 -175.64 -0.46 -9.25 16 8 C 0.11 1.62 5.74 -6.27 -0.04 1.59 16 9 C -0.12 -2.05 4.77 -28.31 -0.14 -2.19 16 10 C -0.09 -1.59 2.78 -89.95 -0.25 -1.84 16 11 H 0.07 1.02 7.68 -51.93 -0.40 0.62 16 12 C 0.14 3.04 6.82 -3.78 -0.03 3.01 16 13 N -0.60 -15.72 3.38 -172.05 -0.58 -16.31 16 14 C -0.23 -6.59 10.19 -15.06 -0.15 -6.75 16 15 H 0.07 2.07 7.87 -52.48 -0.41 1.66 16 16 C -0.01 -0.19 5.35 -17.43 -0.09 -0.29 16 17 N -0.91 -27.35 10.79 55.49 0.60 -26.76 16 18 Si 0.91 22.42 29.58 -169.99 -5.03 17.39 16 19 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 C 0.18 4.50 4.85 -3.33 -0.02 4.48 16 23 C -0.11 -2.02 2.93 -89.17 -0.26 -2.28 16 24 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 25 C -0.12 -1.96 4.50 -27.36 -0.12 -2.08 16 26 C 0.07 0.97 5.95 -2.39 -0.01 0.96 16 27 C -0.23 -2.39 10.62 29.65 0.31 -2.07 16 28 S 0.21 1.46 22.90 -107.50 -2.46 -1.00 16 29 H 0.08 0.24 8.12 -51.93 -0.42 -0.18 16 30 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.80 7.68 -51.93 -0.40 0.40 16 33 H 0.08 1.24 6.99 -51.93 -0.36 0.87 16 34 H 0.07 1.14 7.53 -51.93 -0.39 0.75 16 35 H 0.08 1.45 5.86 -51.92 -0.30 1.15 16 36 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.02 0.45 7.40 -51.92 -0.38 0.07 16 38 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 39 H 0.05 1.30 7.36 -51.93 -0.38 0.92 16 40 H 0.03 0.89 7.32 -51.93 -0.38 0.51 16 41 H 0.07 1.31 5.47 -51.93 -0.28 1.02 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.07 0.89 7.81 -51.93 -0.41 0.48 16 44 H 0.15 1.90 3.99 -73.91 -0.30 1.60 16 45 H 0.19 1.77 8.04 -52.48 -0.42 1.35 16 LS Contribution 358.31 15.07 5.40 5.40 Total: -1.00 -33.88 358.31 -10.17 -44.05 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -6.49 Total: -0.30 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: -1.17 Total: 1.64 kcal Atomic # 7 Polarization: -56.96 SS G_CDS: -0.50 Total: -57.45 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.09 Total: -9.73 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.03 Total: 17.39 kcal Atomic # 16 Polarization: 1.46 SS G_CDS: -2.46 Total: -1.00 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.88 -10.17 -44.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946728362.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.321 kcal (2) G-P(sol) polarization free energy of solvation -33.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds